HHsearch alignment for GI: 254780967 and conserved domain: pfam02487

>pfam02487 CLN3 CLN3 protein. This is a family of proteins from the CLN3 gene. A missense mutation of glutamic acid (E) to lysine (K) at position 295 in the human protein has been implicated in Juvenile neuronal ceroid lipofuscinosis (Batten disease).
Probab=95.03  E-value=0.0089  Score=31.82  Aligned_cols=64  Identities=9%  Similarity=0.053  Sum_probs=34.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             776403799899899999999999999999853-46676999999999999999999999999983
Q gi|254780967|r  298 HPIHLLIFIAFFFLASFQFGLINSNFSSISMEP-FSHLAGTASSIFGFINTVISTILGIIIGQSFN  362 (398)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~  362 (398)
T Consensus       338 fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~v~~~~rEFsmg~~s-vsds~GI~lAg~~~l~~e  402 (409)
T pfam02487       338 FTPSIWIVFLLILFEGLLGGASYVNTFHNIHKEVDPDVREFAMGAAS-ISDSLGVNLAALLALPLH  402 (409)
T ss_pred             HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHEEEHHEHHH-HHHHHHHHHHHHHHHHHH
T ss_conf             53519999999999874352677748898750298767130000024-353060999999875878