HHsearch alignment for GI: 254780967 and conserved domain: pfam02487
>pfam02487 CLN3 CLN3 protein. This is a family of proteins from the CLN3 gene. A missense mutation of glutamic acid (E) to lysine (K) at position 295 in the human protein has been implicated in Juvenile neuronal ceroid lipofuscinosis (Batten disease).
Probab=95.03 E-value=0.0089 Score=31.82 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 776403799899899999999999999999853-46676999999999999999999999999983
Q gi|254780967|r 298 HPIHLLIFIAFFFLASFQFGLINSNFSSISMEP-FSHLAGTASSIFGFINTVISTILGIIIGQSFN 362 (398)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~ 362 (398)
T Consensus 338 fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~v~~~~rEFsmg~~s-vsds~GI~lAg~~~l~~e 402 (409)
T pfam02487 338 FTPSIWIVFLLILFEGLLGGASYVNTFHNIHKEVDPDVREFAMGAAS-ISDSLGVNLAALLALPLH 402 (409)
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHEEEHHEHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 53519999999999874352677748898750298767130000024-353060999999875878