HHsearch alignment for GI: 254780967 and conserved domain: pfam03209

>pfam03209 PUCC PUCC protein. This protein is required for high-level transcription of the PUC operon.
Probab=99.81  E-value=2.4e-17  Score=112.10  Aligned_cols=352  Identities=14%  Similarity=0.091  Sum_probs=192.9

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHH-HHHHHHHHHHHHHHHHCC-----CC------
Q ss_conf             999819998899999999999999999999999986508-----2899-999999999999985100-----11------
Q gi|254780967|r   28 ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFG-----RKIV-MMFGLVIHIISTFIMVTI-----NS------   90 (398)
Q Consensus        28 i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~G-----rr~~-l~~g~~~~~i~~~~~~~a-----~~------   90 (398)
T Consensus         6 MIvEL~~pA~lv~-~lval~~lv-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~a~~a~~~l~~~~~~~~~   83 (402)
T pfam03209         6 MIVELAVPASLVG-IMIALPLLV-APFRALIGFRSDTHRSALGWKRTPYIWLGTLLQAGGLAIMPFALIVLSGQGEAVGA   83 (402)
T ss_pred             HHHHHCHHHHHHH-HHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             7997122789999-999999999-99999975452577666878862678998999999999999999998567422333


Q ss_pred             -HH----HHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-
Q ss_conf             -01----110022321001111111000123321000111122122331000111111111122221111110145678-
Q gi|254780967|r   91 -FT----GMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCM-  164 (398)
Q Consensus        91 -~~----~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~-  164 (398)
T Consensus        84 ~~~~g~~~a~laF~l~Glgv~a~~T~~lALlad~t~e~~R~~~v~i~w~Mli~G~ivtA~i~g~lL~~fs~~rLi~v~~~  163 (402)
T pfam03209        84 PTWAGLILAALAFLLVGLGVHMSQTVGLALATDLADEEDRPKVVGLMYVMLLVGIIVSAITVGWLLADFSPARLIQVIQG  163 (402)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             15999999999999996566275578999998538865669999999999999999999999997564699999999999


Q ss_pred             -HHHHHHHHHHHHHHCCCCCCHHHH--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf             -888877778887616788640221--01111112333100000000025677788763100146888765455431531
Q gi|254780967|r  165 -GVITTFITLWYYIRFPETLDPRDV--RPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLG  241 (398)
Q Consensus       165 -~~~~~~~~~~~~~~~pet~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (398)
T Consensus       164 ~a~i~~~l~~~A~wg~-E~r~~~~~~~~~~~~~~f~~a~~~~~~~p~ar~F~~fv~l~~la~~mQD~iLEPygg~VFGms  242 (402)
T pfam03209       164 VALATMVLNVIALWKQ-EARRPSRPREEPRPEPSFLEAWLLFVAEPQARRFLFFLGLGTLAFFMQDVLLEPYGGEVFGLT  242 (402)
T ss_pred             HHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC
T ss_conf             9999999999998356-667755456777789659999999983987300277999999999842012476402560778


Q ss_pred             C-CHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             1-01588998865767788999998-500156512468877888999999998732577764037998998999999999
Q gi|254780967|r  242 N-LFPIAFAVGGFAMSIASFINSRL-VEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLI  319 (398)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~~~~~~l-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (398)
T Consensus       243 v~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~~li~a~~~----~~~~~l~~~v~l~G~g~G~f  318 (402)
T pfam03209       243 VGETTKLTAFFAGGTLVGFGLAGRVLSRGLDPFRMAGWGCAVGLPAFLALIFSALL----GNVALFVAGTLLIGFGAGLF  318 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHCCHHH
T ss_conf             65769999999889999999999998657775889999999999999999998743----65138999999999702188


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999998534-6676999999999999999999999999983-------117999999999999999999999
Q gi|254780967|r  320 NSNFSSISMEPF-SHLAGTASSIFGFINTVISTILGIIIGQSFN-------GTTYPITIGFFGIAVSSFICILIV  386 (398)
Q Consensus       320 ~~~~~~~~~~~~-~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  386 (398)
T Consensus       319 ~v~al~~mM~la~~~~aG~~mG~WGaaQA~A~Glg~~~Gg~~~Dl~~~l~~~~~~aY~~VF~lEa~l~~~a~~ll  393 (402)
T pfam03209       319 GHATLTAMMDLAPEERAGTALGAWGAAQATAAGLAILLGGVLRDLVRALAGNPATAYGLVFALEALLLIITIFVL  393 (402)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999998168876415898797999999979999999999999998616975278999999999999999997