HHsearch alignment for GI: 254780967 and conserved domain: pfam03825

>pfam03825 Nuc_H_symport Nucleoside H+ symporter.
Probab=99.97  E-value=1.8e-26  Score=162.49  Aligned_cols=378  Identities=11%  Similarity=0.094  Sum_probs=242.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Q ss_conf             99999999988657669999999999819998899999999999999999999999986508-28999999999999999
Q gi|254780967|r    5 IVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFG-RKIVMMFGLVIHIISTF   83 (398)
Q Consensus         5 ~~l~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~G-rr~~l~~g~~~~~i~~~   83 (398)
T Consensus         5 ~RLs~~yFl~F~~~G~~~P~~~~yL~~~Gfs~~qIG-~i~a~~~i~~iv~p~~wG~lADr~~~~~~vl~~~~~~~~~~~~   83 (400)
T pfam03825         5 FRLKVMMFLQLFIWGAWLVTLGSYMGMTGFAGAQIG-LVYSSWGIAAIVMPFLSGIIADRWFSAERVLAVCHLIGAVALF   83 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             569999999999999999999999860798999999-9999999999999999999983456478999999999999999


Q ss_pred             HHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC---CCHH
Q ss_conf             8510011011100223210011111110001233210001111221223310001111111111222211111---1014
Q gi|254780967|r   84 IMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGG---WIGI  160 (398)
Q Consensus        84 ~~~~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~g---Wr~~  160 (398)
T Consensus        84 ~~~~~~~f~~~~~~~~~~~~~~~p~lpL~dsi~~~~l~~~--~~~Yg~iRlwGSiGfi~a~~~~g~~~~~~~~~~~~~~~  161 (400)
T pfam03825        84 GAAQVTTFWPFFAVYLVNSLAYMPTLALTNSIAFANLRDP--VTDFPPIRVGGTVGWILASWPFVMWLVSLATVELSRWQ  161 (400)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             9998524999999999999998350578999999971275--67787203576499999998899999995012056799


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf             56788888777788876167886402210111111233310000000002567778876310014688876545543153
Q gi|254780967|r  161 FVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQL  240 (398)
Q Consensus       161 f~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (398)
T Consensus       162 ~~i~~~~~~ll~~-~~~~lp~~p~~~~~~~~~~~~~~~~~~~lLk~~~~~~Fl~~~~l~~~~h~~yy~F~s~yl~~~gg~  240 (400)
T pfam03825       162 LLIAAGVSALLAG-YALTLPHTPAKRKADDSVDKLLGLDAFKLLKNPRMAVFFVFSFLLGAILQIYNVFANAFLTNFVGF  240 (400)
T ss_pred             HHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999-997388888766555420002025799996591499999999999989999999899999984772


Q ss_pred             CCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHH
Q ss_conf             1101-58899886576778899999850015651246887788899999999873257-776403799899899999999
Q gi|254780967|r  241 GNLF-PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSN-HPIHLLIFIAFFFLASFQFGL  318 (398)
Q Consensus       241 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  318 (398)
T Consensus       241 ~~~~~~~~~~lgvvaEI~~f~~~~~ll~r~g~~~lll~a~~~~~lR~---~l~a~~~~~~~~~~~~l~l~q~LHg~tfg~  317 (400)
T pfam03825       241 AVKLASIVLSLGQVAEIIFMLTLPFFLKRFGIKVVMLVGVVAWALRF---AFFAYGADPVPFGVALLLLSMIVHGVAYDF  317 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67799999999999999999999999998489999999999999999---999942674037999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHHHHCC
Q ss_conf             99999999985346-676999999999999999-99999999998311------79999999-99999999999999422
Q gi|254780967|r  319 INSNFSSISMEPFS-HLAGTASSIFGFINTVIS-TILGIIIGQSFNGT------TYPITIGF-FGIAVSSFICILIVEKN  389 (398)
Q Consensus       319 ~~~~~~~~~~~~~~-~~~G~a~~l~~~~~~~~~-~~~~~~~g~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~  389 (398)
T Consensus       318 f~~a~~~~v~~~~p~~~ra~~Q~l~~~~~~G~g~~iG~~~~G~l~~~f~~~~~~~w~~~w~~~~~~~~~~~~~f~~~f~~  397 (400)
T pfam03825       318 FNITGYIFVDKEVPKDIRASAQGLFNLMINGVGNVLGSILSGMLVGMFTTDGSVDWQTLWLVFAGMALALAVLFMLFFRY  397 (400)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999998688553879999999999708999999999999999706776873999999999999999999998368