HHsearch alignment for GI: 254780967 and conserved domain: pfam03825
>pfam03825 Nuc_H_symport Nucleoside H+ symporter.
Probab=99.97 E-value=1.8e-26 Score=162.49 Aligned_cols=378 Identities=11% Similarity=0.094 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Q ss_conf 99999999988657669999999999819998899999999999999999999999986508-28999999999999999
Q gi|254780967|r 5 IVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFG-RKIVMMFGLVIHIISTF 83 (398)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~G-rr~~l~~g~~~~~i~~~ 83 (398)
T Consensus 5 ~RLs~~yFl~F~~~G~~~P~~~~yL~~~Gfs~~qIG-~i~a~~~i~~iv~p~~wG~lADr~~~~~~vl~~~~~~~~~~~~ 83 (400)
T pfam03825 5 FRLKVMMFLQLFIWGAWLVTLGSYMGMTGFAGAQIG-LVYSSWGIAAIVMPFLSGIIADRWFSAERVLAVCHLIGAVALF 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 569999999999999999999999860798999999-9999999999999999999983456478999999999999999
Q ss_pred HHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC---CCHH
Q ss_conf 8510011011100223210011111110001233210001111221223310001111111111222211111---1014
Q gi|254780967|r 84 IMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGG---WIGI 160 (398)
Q Consensus 84 ~~~~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~g---Wr~~ 160 (398)
T Consensus 84 ~~~~~~~f~~~~~~~~~~~~~~~p~lpL~dsi~~~~l~~~--~~~Yg~iRlwGSiGfi~a~~~~g~~~~~~~~~~~~~~~ 161 (400)
T pfam03825 84 GAAQVTTFWPFFAVYLVNSLAYMPTLALTNSIAFANLRDP--VTDFPPIRVGGTVGWILASWPFVMWLVSLATVELSRWQ 161 (400)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 9998524999999999999998350578999999971275--67787203576499999998899999995012056799
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 56788888777788876167886402210111111233310000000002567778876310014688876545543153
Q gi|254780967|r 161 FVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQL 240 (398)
Q Consensus 161 f~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (398)
T Consensus 162 ~~i~~~~~~ll~~-~~~~lp~~p~~~~~~~~~~~~~~~~~~~lLk~~~~~~Fl~~~~l~~~~h~~yy~F~s~yl~~~gg~ 240 (400)
T pfam03825 162 LLIAAGVSALLAG-YALTLPHTPAKRKADDSVDKLLGLDAFKLLKNPRMAVFFVFSFLLGAILQIYNVFANAFLTNFVGF 240 (400)
T ss_pred HHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999-997388888766555420002025799996591499999999999989999999899999984772
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1101-58899886576778899999850015651246887788899999999873257-776403799899899999999
Q gi|254780967|r 241 GNLF-PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSN-HPIHLLIFIAFFFLASFQFGL 318 (398)
Q Consensus 241 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (398)
T Consensus 241 ~~~~~~~~~~lgvvaEI~~f~~~~~ll~r~g~~~lll~a~~~~~lR~---~l~a~~~~~~~~~~~~l~l~q~LHg~tfg~ 317 (400)
T pfam03825 241 AVKLASIVLSLGQVAEIIFMLTLPFFLKRFGIKVVMLVGVVAWALRF---AFFAYGADPVPFGVALLLLSMIVHGVAYDF 317 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67799999999999999999999999998489999999999999999---999942674037999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHHHHCC
Q ss_conf 99999999985346-676999999999999999-99999999998311------79999999-99999999999999422
Q gi|254780967|r 319 INSNFSSISMEPFS-HLAGTASSIFGFINTVIS-TILGIIIGQSFNGT------TYPITIGF-FGIAVSSFICILIVEKN 389 (398)
Q Consensus 319 ~~~~~~~~~~~~~~-~~~G~a~~l~~~~~~~~~-~~~~~~~g~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~ 389 (398)
T Consensus 318 f~~a~~~~v~~~~p~~~ra~~Q~l~~~~~~G~g~~iG~~~~G~l~~~f~~~~~~~w~~~w~~~~~~~~~~~~~f~~~f~~ 397 (400)
T pfam03825 318 FNITGYIFVDKEVPKDIRASAQGLFNLMINGVGNVLGSILSGMLVGMFTTDGSVDWQTLWLVFAGMALALAVLFMLFFRY 397 (400)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999998688553879999999999708999999999999999706776873999999999999999999998368