RPSBLAST alignment for GI: 254780967 and conserved domain: TIGR00711

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. Length = 485
 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 11/178 (6%)

Query: 1   MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60
           +  V+++   MA+  L   I+   +P I+  L  S     Q +I+ Y++   I+    G 
Sbjct: 3   LTIVLMLGTFMAV--LDSTIVNVAIPTIAGDLGSSLSQ-VQWVITSYMLANAISIPLTGW 59

Query: 61  LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIY 120
           L+ RFG + + +       + + +     +   M+  R+IQG GG     ++ S + +IY
Sbjct: 60  LAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY 119

Query: 121 DGRDMAKVLSIAMMIFMIMPILAPSI-GQATVALSGGW-------IGIFVCMGVITTF 170
                 + ++I  +  ++ P L P++ G         W       IGI V +      
Sbjct: 120 PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFIL 177