RPSBLAST alignment for GI: 254780967 and conserved domain: TIGR00711
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. Length = 485
Score = 48.1 bits (115), Expect = 4e-06
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 11/178 (6%)
Query: 1 MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60
+ V+++ MA+ L I+ +P I+ L S Q +I+ Y++ I+ G
Sbjct: 3 LTIVLMLGTFMAV--LDSTIVNVAIPTIAGDLGSSLSQ-VQWVITSYMLANAISIPLTGW 59
Query: 61 LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIY 120
L+ RFG + + + + + + + M+ R+IQG GG ++ S + +IY
Sbjct: 60 LAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY 119
Query: 121 DGRDMAKVLSIAMMIFMIMPILAPSI-GQATVALSGGW-------IGIFVCMGVITTF 170
+ ++I + ++ P L P++ G W IGI V +
Sbjct: 120 PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFIL 177