RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780967|ref|YP_003065380.1| probable multidrug resistance transporter protein [Candidatus Liberibacter asiaticus str. psy62] (398 letters) >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.. Length = 352 Score = 72.3 bits (178), Expect = 2e-13 Identities = 68/384 (17%), Positives = 147/384 (38%), Gaps = 35/384 (9%) Query: 4 VIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSD 63 ++++ + ++ L ++ P LP +++ L LS G ++S + +GY + + G LSD Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAG-LIVSAFSLGYALGSLLAGYLSD 59 Query: 64 RFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGR 123 RFGR+ V++ GL++ + + ++ +S +L R + G+GG A ++I + + + Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119 Query: 124 DMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETL 183 + + L + F + +L P +G +A S GW +F+ + ++ + L L Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGL-LAESLGWRWLFLILAILGLLLALLLLFLLRLLL 178 Query: 184 DPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNL 243 L +A L G + + L Sbjct: 179 ---------------------------LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAA 211 Query: 244 FP-IAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHL 302 + ++ G + + + L ++ G RR+ LLI ++ LL+ + L Sbjct: 212 EAGLLLSLFGLGGILGALLGGLLSDRLGRRRL---LLLIGLLLAALGLLLLALAPSLALL 268 Query: 303 LIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFN 362 L+ + + + S GTAS +F ++ + ++ G + Sbjct: 269 LVALLLLGF--GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 Query: 363 GTTYPITIGFFGIAVSSFICILIV 386 Y +L++ Sbjct: 327 TGGYGGVFLILAALALLAALLLLL 350 Score = 40.4 bits (95), Expect = 9e-04 Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 1/176 (0%) Query: 4 VIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSD 63 ++++A+ + S G +L LP + + L+S + +G + + G LSD Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236 Query: 64 RFGRK-IVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDG 122 R GR+ ++++ GL++ + ++ S +L L+ G G +++ ++ Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296 Query: 123 RDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIR 178 + + L P + + G + + L + Sbjct: 297 EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352 >gnl|CDD|32643 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]. Length = 394 Score = 70.6 bits (173), Expect = 6e-13 Identities = 57/315 (18%), Positives = 114/315 (36%), Gaps = 14/315 (4%) Query: 1 MEFVIVIAMLMAINSLGID--IILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFY 58 ++ ++A+ +A ++G + + LP I+ L +S GQ LI+ Y +G + Sbjct: 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQ-LITAYALGVALGAPLL 68 Query: 59 GPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRD 118 L+ R R+ +++ L + I+S + SF +L R + G+ I ++ Sbjct: 69 ALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAAR 128 Query: 119 IYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIR 178 + + L++ + +L +G L GW F+ + V+ L + Sbjct: 129 LVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWRATFLAIAVLALLALLLLWKL 187 Query: 179 FPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIY 238 P +L L + + + L +A L M + + Sbjct: 188 L-----PPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA 242 Query: 239 QLGNLF-PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSN 297 + G A I + + RL ++ G RR +LL+ + L + T Sbjct: 243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALAL---LALTFTGA 298 Query: 298 HPIHLLIFIAFFFLA 312 P L + + A Sbjct: 299 SPALALALLFLWGFA 313 >gnl|CDD|35476 KOG0255, KOG0255, KOG0255, Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]. Length = 521 Score = 62.5 bits (151), Expect = 2e-10 Identities = 59/385 (15%), Positives = 133/385 (34%), Gaps = 38/385 (9%) Query: 44 ISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI 103 S + +G + + +GPLSDRFGRK V++ L++ II + ++ L R + G Sbjct: 124 QSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF 183 Query: 104 GGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVC 163 G+ P + ++ +I + L++ F+ +L ++ W +F Sbjct: 184 FGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAA----YITRDWRWLFWI 239 Query: 164 MGVITTFITLWYYI------------RFPETLDPRDVRPLNLYAILHSFSLIFKHRASTL 211 + + + L +++ R E + L L+ Sbjct: 240 ISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRP 299 Query: 212 YNIANSLTMGAILGFVNSSQQIYVGIYQ--------------------LGNLFPIAFAVG 251 + + + L + + Y +Y LG + F + Sbjct: 300 LKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLS 359 Query: 252 GFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFL 311 G A F N L+ +FG R SL + + + + +H ++ + F Sbjct: 360 GLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFF 419 Query: 312 ASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIG 371 F LI + + + A A S + ++++ + +++ Q F + + Sbjct: 420 IGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPL--LGLILF 477 Query: 372 FFGIAVSSFICILIVEKNQMFRKTE 396 + + + +L++ + + Sbjct: 478 GWLALLLGLLSLLLLPETKGKPLPG 502 >gnl|CDD|37744 KOG2533, KOG2533, KOG2533, Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]. Length = 495 Score = 60.3 bits (146), Expect = 8e-10 Identities = 72/412 (17%), Positives = 138/412 (33%), Gaps = 36/412 (8%) Query: 3 FVIVIAMLMAINSLG-IDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPL 61 + + L L I+ L + + L L G L + + +GY I Q G L Sbjct: 46 ILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLG-VLDTVFYVGYIIGQFPSGLL 104 Query: 62 SDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYD 121 DRF + ++ + F+ ++SF G++ +R + G+ + ++I+ + Y Sbjct: 105 GDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYG 164 Query: 122 GRDMAKVLSI----AMMIFMIMPILAPSIGQ-ATVALSGGWIGIFVCMGVITTFITLWYY 176 + + I A + + ++A + + GW +F+ GVIT + + + Sbjct: 165 KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 Query: 177 IRFPE-------------TLDPRDVRPLNLYAILHSFSLI-----FKHRASTLYNIANSL 218 P+ L +R I + F K +++ Sbjct: 225 FFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFF 284 Query: 219 TMGAILGFVNSSQQIYVGIYQL----GNLFPIAFAVGGFAMSIASFINSRLVEKFGIRRV 274 GF NL + VGG I + S ++ RR+ Sbjct: 285 LKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRL 344 Query: 275 SHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSHL 334 L + I G+ L+ + I + L + +I +++S ++ + Sbjct: 345 LFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATA--IIALSWTSANLAGNTKA 402 Query: 335 AGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFGIAVSSFICILIV 386 T S+I + G I GQ F P + C+ IV Sbjct: 403 LTTVSAIIDGTGSA-----GAISGQLFRSLDAPRYGWGAVFYMLVAACVGIV 449 >gnl|CDD|32405 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]. Length = 417 Score = 57.5 bits (139), Expect = 5e-09 Identities = 68/376 (18%), Positives = 131/376 (34%), Gaps = 26/376 (6%) Query: 20 IILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHI 79 + P I LS G + L+G + ++ YG L+DRFG + + +++ + Sbjct: 32 LFSPLGVFIKSDFGLSEGQKGLLVAIPILVG-ALLRLPYGFLTDRFGGRKWTILSMLLLL 90 Query: 80 ISTFIM---VTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMM-- 134 I + VT S +L + L+ G+ GA+ + + + L IA Sbjct: 91 IPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAGAGN 149 Query: 135 -----IFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLDPRDVR 189 ++ P++A + G G + + + W + D + R Sbjct: 150 LGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVA----LAIAAVLAWLGMN-----DVPEHR 200 Query: 190 PLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFA 249 + +F ++ + L ++ T G +GF V + L + A Sbjct: 201 ASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIA 260 Query: 250 -VGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAF 308 + ++A + L ++ G RRV+ + + L H ++F+A Sbjct: 261 FLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAV 320 Query: 309 FFLASFQFGLIN-SNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGT--T 365 F GL N S F I + F G + I G I + L + G S + T Sbjct: 321 FLALFVFAGLGNGSVFKMIPVI-FPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSY 379 Query: 366 YPITIGFFGIAVSSFI 381 + + + + Sbjct: 380 TGAFMLLLAFYLVALV 395 >gnl|CDD|36544 KOG1330, KOG1330, KOG1330, Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]. Length = 493 Score = 56.8 bits (137), Expect = 1e-08 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 1/149 (0%) Query: 25 LPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI 84 L ++ ++S+ G L + +++ + IA +G L+DR+ RK V+ G+ I ++ F Sbjct: 56 LKEVQTYFNISDSELGL-LQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA 114 Query: 85 MVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAP 144 N F +L R GIG A+ I S+I D + ++VL I + L Sbjct: 115 SGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGY 174 Query: 145 SIGQATVALSGGWIGIFVCMGVITTFITL 173 +G +L+ W F V+ + L Sbjct: 175 VVGSVVASLTFWWRWAFRGSAVLGVIVGL 203 >gnl|CDD|37743 KOG2532, KOG2532, KOG2532, Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]. Length = 466 Score = 48.8 bits (116), Expect = 3e-06 Identities = 70/366 (19%), Positives = 123/366 (33%), Gaps = 21/366 (5%) Query: 42 HLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM--VTINSFTGMLCMRL 99 + S + GY + QI G L+D+FG + V +I + T + F +L +R Sbjct: 77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRF 136 Query: 100 IQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIG 159 +QG+G SI+ + + ++I + I+ + S GW Sbjct: 137 LQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196 Query: 160 IFVCMGVITTFIT-LWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTL--YNIAN 216 IF G++ LW+ ++ L I S + + I Sbjct: 197 IFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILT 256 Query: 217 SLTMGAIL--GFVNSSQQIYVGIYQLGNL-----FPIAF-----AVGGFAMSIASFINSR 264 S + AI F + + Y L F + A+ AM+I F+ + Sbjct: 257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQ 316 Query: 265 LVEKFGIRRVSHYSLLIFFMITGSW----LLVQITSNHPIHLLIFIAFFFLASFQFGLIN 320 L ++ R +S ++ F L+ + H L+ + +A G Sbjct: 317 LSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNI 376 Query: 321 SNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFGIAVSSF 380 S F + AG I F+ + I +++G T F IA Sbjct: 377 SGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGIL 436 Query: 381 ICILIV 386 I I+ Sbjct: 437 IVGNII 442 >gnl|CDD|37826 KOG2615, KOG2615, KOG2615, Permease of the major facilitator superfamily [General function prediction only]. Length = 451 Score = 47.6 bits (113), Expect = 6e-06 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 6/153 (3%) Query: 39 YGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMR 98 Y L S + I I+ +G LSDR+GRK V++ L+ +S + +F + R Sbjct: 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLAR 128 Query: 99 LIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATV---ALSG 155 + GI +I +II D+ + +S+ F + IL P IG ++SG Sbjct: 129 FLGGIFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG 187 Query: 156 GWIGIFVCMGVI--TTFITLWYYIRFPETLDPR 186 + C+ V ++ PETL R Sbjct: 188 SYPFALPCLLVFILAAGDVTFFPWFLPETLPLR 220 >gnl|CDD|38968 KOG3764, KOG3764, KOG3764, Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]. Length = 464 Score = 45.3 bits (107), Expect = 3e-05 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 53 IAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIIT 112 + F+G L DR G KI M+ GL + +ST + NS+ + R +QG+G A Sbjct: 121 LVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 Query: 113 ISIIRDIY-DGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFI 171 ++++ D++ + + V+ IA+ + ++ P G +G V V+ Sbjct: 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDG 240 Query: 172 TLWYYIRFPETLDPR 186 L + P +DP Sbjct: 241 ALQLLVIEPTEMDPD 255 >gnl|CDD|143864 pfam00083, Sugar_tr, Sugar (and other) transporter. Length = 449 Score = 43.8 bits (104), Expect = 7e-05 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 18 IDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVI 77 I S ++ ++S + +G I +F G L DRFGRK ++ G V+ Sbjct: 26 IKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVL 85 Query: 78 HIISTFIMVTINSF-TGMLC-MRLIQGIG 104 +I + ML R+I G+G Sbjct: 86 FVIGALLQGFAKGKSFYMLIVGRVIVGLG 114 Score = 33.0 bits (76), Expect = 0.16 Identities = 30/191 (15%), Positives = 65/191 (34%), Gaps = 18/191 (9%) Query: 3 FVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYG-PL 61 ++ + + + GI+ I P I ++L LS+ + + F L Sbjct: 254 LLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLV----TIIVGVVNFVFTFIAIFL 309 Query: 62 SDRFGRKIVMMFGLVIHIISTFIM---------VTINSFTGMLCMRLIQGIGGAAPRIIT 112 DRFGR+ +++ G I ++ ++ + L + Sbjct: 310 VDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVP 369 Query: 113 ISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIG-IFVCMGVITTFI 171 I+ +++ K ++IA + L + GG++ +F + V+ Sbjct: 370 WVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILF 429 Query: 172 TLWYYIRFPET 182 + PET Sbjct: 430 V---FFFVPET 437 >gnl|CDD|35475 KOG0254, KOG0254, KOG0254, Predicted transporter (major facilitator superfamily) [General function prediction only]. Length = 513 Score = 43.6 bits (102), Expect = 1e-04 Identities = 27/131 (20%), Positives = 53/131 (40%) Query: 43 LISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQG 102 L S +G + + G L DR GRK ++ +V+ +I I+ S+ ++ R++ G Sbjct: 94 LTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTG 153 Query: 103 IGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFV 162 +G ++ I +I ++S+ + I +L I T + GW Sbjct: 154 LGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLG 213 Query: 163 CMGVITTFITL 173 + + L Sbjct: 214 LALIPAVILAL 224 >gnl|CDD|32452 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]. Length = 448 Score = 43.3 bits (102), Expect = 1e-04 Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 8/161 (4%) Query: 26 PKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM 85 P + + LS G L S + I YG+++ G LSDR + M FGL++ I + Sbjct: 53 PALIEDGGLSKTQLGI-LGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILF 111 Query: 86 VTINSFTGMLCMRLIQGI---GGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMI-MPI 141 S + ++ G G P TI+ + ++ SI I + Sbjct: 112 GFSPSLFLFAVLWVLNGWFQGMGWPPCARTIT---HWFSRKERGTWWSIWNTSHNIGGAL 168 Query: 142 LAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPET 182 A A GGW F G+I + L + Sbjct: 169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 >gnl|CDD|35473 KOG0252, KOG0252, KOG0252, Inorganic phosphate transporter [Inorganic ion transport and metabolism]. Length = 538 Score = 38.4 bits (89), Expect = 0.003 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 48 LIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM---VTINSFTGML----CMRLI 100 L+G Q+F+G L D+FGRK V L+I II + + V S G++ R + Sbjct: 94 LVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFL 153 Query: 101 QGIG 104 GIG Sbjct: 154 LGIG 157 >gnl|CDD|32393 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]. Length = 467 Score = 37.1 bits (86), Expect = 0.008 Identities = 48/233 (20%), Positives = 86/233 (36%), Gaps = 11/233 (4%) Query: 133 MMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPE-TLDPRDVRPL 191 +++ ++ P L G AL G+ G + +GVI + L+ + E ++ + + Sbjct: 163 LLVAVLFPPLVKLFGGGDKAL--GYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG 220 Query: 192 NLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN---LFPIAF 248 + SF LIFK+R L + N L A + S +Y Y LG+ + Sbjct: 221 VKLKLKDSFLLIFKNRPLLLLLLMNLLLFIA--FNIRGSIMVYYVTYVLGDPELFAYLLL 278 Query: 249 AVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAF 308 G + I + RLV+KFG +++ LL+ + S I + + IA Sbjct: 279 LASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAG 338 Query: 309 FFLA---SFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIG 358 + ++ + G S F + + G I G Sbjct: 339 VGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 >gnl|CDD|39884 KOG4686, KOG4686, KOG4686, Predicted sugar transporter [Carbohydrate transport and metabolism]. Length = 459 Score = 34.6 bits (79), Expect = 0.043 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 62 SDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYD 121 R G I+ +F + +I ++F ML R + GIGG + + + Sbjct: 108 GIRLGTIILCIFVFLGQLIFA-AGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFK 166 Query: 122 GRDMAKVLSIAMMI--------FMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITL 173 G+++ V + + + F++MP L ++G+ + +G+++C V T +L Sbjct: 167 GKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSL 226 >gnl|CDD|32637 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]. Length = 395 Score = 34.0 bits (78), Expect = 0.067 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 6/159 (3%) Query: 23 PCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIIST 82 P L +I L LS G L + L+ +G+ L+ RFG + + L++ Sbjct: 33 PLLDEIRQDLGLSFSVAGL-LTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGI 91 Query: 83 FIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPIL 142 I L L G G A ++ S+I+ + + + + + L Sbjct: 92 LIRSLGGLPLLFLGTLLA-GAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGAGAAL 149 Query: 143 APSIGQATVALSGGW---IGIFVCMGVITTFITLWYYIR 178 A ++ SGGW +G + + ++ I L +R Sbjct: 150 AAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALR 188 >gnl|CDD|31081 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]. Length = 422 Score = 32.5 bits (74), Expect = 0.21 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 7/147 (4%) Query: 9 MLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRK 68 L + DI++P L ++ L+ + + GY I + G L + G K Sbjct: 23 FLWGFITCLNDILIPHLKEV---FDLTYFEASL-IQFAFFGGYFIMSLPAGLLIKKLGYK 78 Query: 69 IVMMFGLVIHIISTFIMVT---INSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDM 125 ++ GL+++ + + S+ L I G + + Sbjct: 79 AGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA 138 Query: 126 AKVLSIAMMIFMIMPILAPSIGQATVA 152 A L++A + IL P +G + + Sbjct: 139 AFRLNLAQAFNGLGAILGPLLGSSLIL 165 >gnl|CDD|35789 KOG0569, KOG0569, KOG0569, Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]. Length = 485 Score = 30.6 bits (69), Expect = 0.89 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 43 LISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT---INSFTGMLCMRL 99 ++S + IG I G L+DRFGRK ++ ++ +++ +M SF ++ RL Sbjct: 65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRL 124 Query: 100 IQGIGGA 106 I G+ Sbjct: 125 IVGLACG 131 Score = 27.5 bits (61), Expect = 6.7 Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 12/140 (8%) Query: 53 IAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMV-------TINSFTGMLCMRLIQGIG- 104 ++ + L DR GR+ +++ L + ++ +M + S+ LC+ I Sbjct: 320 LSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFII 379 Query: 105 --GAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFV 162 P I I +++ + S+A + + + + G ++ I Sbjct: 380 SFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILF 439 Query: 163 CMGVITTFITLWYYIRFPET 182 + + I L+ Y+ PET Sbjct: 440 VIPLAIFLIYLYRYL--PET 457 >gnl|CDD|38307 KOG3097, KOG3097, KOG3097, Predicted membrane protein [Function unknown]. Length = 390 Score = 29.9 bits (67), Expect = 1.2 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Query: 44 ISFYLIGYGI----AQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT 87 I F + +G+ A +G L GR +++ G V+H++ I+ Sbjct: 312 IGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFF 359 >gnl|CDD|48188 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.. Length = 408 Score = 28.5 bits (64), Expect = 3.0 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 97 MRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQA 149 + L + +GG A ++ + + I G + FMI+P+ APS +A Sbjct: 123 LPLYRYLGGLAAYVLPVPMFNVINGGAHAGN--KLDFQEFMIVPVGAPSFSEA 173 >gnl|CDD|144597 pfam01062, Bestrophin, Bestrophin. Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localized to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. Length = 275 Score = 28.2 bits (64), Expect = 4.2 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 302 LLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIF-GFINT 347 LL+F+ L + + S + PF+ L G A SIF GF N Sbjct: 19 LLLFLLLSALVVVIYRYLLSQKIFLPAAPFT-LLGIALSIFLGFRNN 64 >gnl|CDD|35856 KOG0637, KOG0637, KOG0637, Sucrose transporter and related proteins [Carbohydrate transport and metabolism]. Length = 498 Score = 27.9 bits (62), Expect = 5.3 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 23/153 (15%) Query: 253 FAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFF--- 309 + I S + +L KFG R+ + F + TG LV T H Sbjct: 343 IVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPL 402 Query: 310 ----FLASFQFGLINSNFSSISMEPFSHLAGTAS-------------SIFGFINTVISTI 352 + A + ++ + PF+ + + I V+ ++ Sbjct: 403 LTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSL 462 Query: 353 LGIIIGQSFNGTTYPITIGFFGIAVSSFICILI 385 + Q F G P F AV+ I ++ Sbjct: 463 GLGPLDQLFGGGNLP---AFVSGAVALLIGGIV 492 >gnl|CDD|30497 COG0148, Eno, Enolase [Carbohydrate transport and metabolism]. Length = 423 Score = 27.9 bits (62), Expect = 5.7 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Query: 97 MRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQA 149 + L + +GG ++ + ++ ++ +G A ++ + FMIMP+ A S +A Sbjct: 127 IPLYRYLGGLNALVLPVPMM-NVINGGAHADN-NLDIQEFMIMPVGAESFKEA 177 >gnl|CDD|31175 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]. Length = 541 Score = 27.4 bits (61), Expect = 7.5 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 2/175 (1%) Query: 212 YNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAMSIASFINSRLVEKFGI 271 ++ + G ++ ++ +Y + LG L G F+ F++ G Sbjct: 70 KALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDPAFGFALGW 129 Query: 272 RRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPF 331 ++++ + +T + L++Q + I+IA F + F L + F Sbjct: 130 NYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWF 189 Query: 332 SHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFGIAVSSFICILIV 386 S + I GFI I I G + G Y G F F + ++ Sbjct: 190 SSIKVLT--IIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVI 242 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.333 0.146 0.437 Gapped Lambda K H 0.267 0.0652 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,976,155 Number of extensions: 294167 Number of successful extensions: 1667 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1583 Number of HSP's successfully gapped: 315 Length of query: 398 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 302 Effective length of database: 4,189,273 Effective search space: 1265160446 Effective search space used: 1265160446 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 58 (26.3 bits)