RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780967|ref|YP_003065380.1| probable multidrug resistance
transporter protein [Candidatus Liberibacter asiaticus str. psy62]
(398 letters)
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated..
Length = 352
Score = 72.3 bits (178), Expect = 2e-13
Identities = 68/384 (17%), Positives = 147/384 (38%), Gaps = 35/384 (9%)
Query: 4 VIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSD 63
++++ + ++ L ++ P LP +++ L LS G ++S + +GY + + G LSD
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAG-LIVSAFSLGYALGSLLAGYLSD 59
Query: 64 RFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGR 123
RFGR+ V++ GL++ + + ++ +S +L R + G+GG A ++I + + +
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119
Query: 124 DMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETL 183
+ + L + F + +L P +G +A S GW +F+ + ++ + L L
Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGL-LAESLGWRWLFLILAILGLLLALLLLFLLRLLL 178
Query: 184 DPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNL 243
L +A L G + + L
Sbjct: 179 ---------------------------LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAA 211
Query: 244 FP-IAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHL 302
+ ++ G + + + L ++ G RR+ LLI ++ LL+ + L
Sbjct: 212 EAGLLLSLFGLGGILGALLGGLLSDRLGRRRL---LLLIGLLLAALGLLLLALAPSLALL 268
Query: 303 LIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFN 362
L+ + + + S GTAS +F ++ + ++ G +
Sbjct: 269 LVALLLLGF--GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326
Query: 363 GTTYPITIGFFGIAVSSFICILIV 386
Y +L++
Sbjct: 327 TGGYGGVFLILAALALLAALLLLL 350
Score = 40.4 bits (95), Expect = 9e-04
Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 1/176 (0%)
Query: 4 VIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSD 63
++++A+ + S G +L LP + + L+S + +G + + G LSD
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 64 RFGRK-IVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDG 122
R GR+ ++++ GL++ + ++ S +L L+ G G +++ ++
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296
Query: 123 RDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIR 178
+ + L P + + G + + L +
Sbjct: 297 EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
>gnl|CDD|32643 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 70.6 bits (173), Expect = 6e-13
Identities = 57/315 (18%), Positives = 114/315 (36%), Gaps = 14/315 (4%)
Query: 1 MEFVIVIAMLMAINSLGID--IILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFY 58
++ ++A+ +A ++G + + LP I+ L +S GQ LI+ Y +G +
Sbjct: 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQ-LITAYALGVALGAPLL 68
Query: 59 GPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRD 118
L+ R R+ +++ L + I+S + SF +L R + G+ I ++
Sbjct: 69 ALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAAR 128
Query: 119 IYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIR 178
+ + L++ + +L +G L GW F+ + V+ L +
Sbjct: 129 LVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWRATFLAIAVLALLALLLLWKL 187
Query: 179 FPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIY 238
P +L L + + + L +A L M + +
Sbjct: 188 L-----PPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA 242
Query: 239 QLGNLF-PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSN 297
+ G A I + + RL ++ G RR +LL+ + L + T
Sbjct: 243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALAL---LALTFTGA 298
Query: 298 HPIHLLIFIAFFFLA 312
P L + + A
Sbjct: 299 SPALALALLFLWGFA 313
>gnl|CDD|35476 KOG0255, KOG0255, KOG0255, Synaptic vesicle transporter SVOP and
related transporters (major facilitator superfamily)
[General function prediction only].
Length = 521
Score = 62.5 bits (151), Expect = 2e-10
Identities = 59/385 (15%), Positives = 133/385 (34%), Gaps = 38/385 (9%)
Query: 44 ISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI 103
S + +G + + +GPLSDRFGRK V++ L++ II + ++ L R + G
Sbjct: 124 QSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF 183
Query: 104 GGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVC 163
G+ P + ++ +I + L++ F+ +L ++ W +F
Sbjct: 184 FGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAA----YITRDWRWLFWI 239
Query: 164 MGVITTFITLWYYI------------RFPETLDPRDVRPLNLYAILHSFSLIFKHRASTL 211
+ + + L +++ R E + L L+
Sbjct: 240 ISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRP 299
Query: 212 YNIANSLTMGAILGFVNSSQQIYVGIYQ--------------------LGNLFPIAFAVG 251
+ + + L + + Y +Y LG + F +
Sbjct: 300 LKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLS 359
Query: 252 GFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFL 311
G A F N L+ +FG R SL + + + + +H ++ + F
Sbjct: 360 GLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFF 419
Query: 312 ASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIG 371
F LI + + + A A S + ++++ + +++ Q F + +
Sbjct: 420 IGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPL--LGLILF 477
Query: 372 FFGIAVSSFICILIVEKNQMFRKTE 396
+ + + +L++ + +
Sbjct: 478 GWLALLLGLLSLLLLPETKGKPLPG 502
>gnl|CDD|37744 KOG2533, KOG2533, KOG2533, Permease of the major facilitator
superfamily [Carbohydrate transport and metabolism].
Length = 495
Score = 60.3 bits (146), Expect = 8e-10
Identities = 72/412 (17%), Positives = 138/412 (33%), Gaps = 36/412 (8%)
Query: 3 FVIVIAMLMAINSLG-IDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPL 61
+ + L L I+ L + + L L G L + + +GY I Q G L
Sbjct: 46 ILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLG-VLDTVFYVGYIIGQFPSGLL 104
Query: 62 SDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYD 121
DRF + ++ + F+ ++SF G++ +R + G+ + ++I+ + Y
Sbjct: 105 GDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYG 164
Query: 122 GRDMAKVLSI----AMMIFMIMPILAPSIGQ-ATVALSGGWIGIFVCMGVITTFITLWYY 176
+ + I A + + ++A + + GW +F+ GVIT + + +
Sbjct: 165 KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224
Query: 177 IRFPE-------------TLDPRDVRPLNLYAILHSFSLI-----FKHRASTLYNIANSL 218
P+ L +R I + F K +++
Sbjct: 225 FFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFF 284
Query: 219 TMGAILGFVNSSQQIYVGIYQL----GNLFPIAFAVGGFAMSIASFINSRLVEKFGIRRV 274
GF NL + VGG I + S ++ RR+
Sbjct: 285 LKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRL 344
Query: 275 SHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSHL 334
L + I G+ L+ + I + L + +I +++S ++ +
Sbjct: 345 LFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATA--IIALSWTSANLAGNTKA 402
Query: 335 AGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFGIAVSSFICILIV 386
T S+I + G I GQ F P + C+ IV
Sbjct: 403 LTTVSAIIDGTGSA-----GAISGQLFRSLDAPRYGWGAVFYMLVAACVGIV 449
>gnl|CDD|32405 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 57.5 bits (139), Expect = 5e-09
Identities = 68/376 (18%), Positives = 131/376 (34%), Gaps = 26/376 (6%)
Query: 20 IILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHI 79
+ P I LS G + L+G + ++ YG L+DRFG + + +++ +
Sbjct: 32 LFSPLGVFIKSDFGLSEGQKGLLVAIPILVG-ALLRLPYGFLTDRFGGRKWTILSMLLLL 90
Query: 80 ISTFIM---VTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMM-- 134
I + VT S +L + L+ G+ GA+ + + + L IA
Sbjct: 91 IPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAGAGN 149
Query: 135 -----IFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLDPRDVR 189
++ P++A + G G + + + W + D + R
Sbjct: 150 LGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVA----LAIAAVLAWLGMN-----DVPEHR 200
Query: 190 PLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFA 249
+ +F ++ + L ++ T G +GF V + L + A
Sbjct: 201 ASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIA 260
Query: 250 -VGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAF 308
+ ++A + L ++ G RRV+ + + L H ++F+A
Sbjct: 261 FLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAV 320
Query: 309 FFLASFQFGLIN-SNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGT--T 365
F GL N S F I + F G + I G I + L + G S + T
Sbjct: 321 FLALFVFAGLGNGSVFKMIPVI-FPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSY 379
Query: 366 YPITIGFFGIAVSSFI 381
+ + + +
Sbjct: 380 TGAFMLLLAFYLVALV 395
>gnl|CDD|36544 KOG1330, KOG1330, KOG1330, Sugar transporter/spinster transmembrane
protein [Carbohydrate transport and metabolism].
Length = 493
Score = 56.8 bits (137), Expect = 1e-08
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
Query: 25 LPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI 84
L ++ ++S+ G L + +++ + IA +G L+DR+ RK V+ G+ I ++ F
Sbjct: 56 LKEVQTYFNISDSELGL-LQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA 114
Query: 85 MVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAP 144
N F +L R GIG A+ I S+I D + ++VL I + L
Sbjct: 115 SGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGY 174
Query: 145 SIGQATVALSGGWIGIFVCMGVITTFITL 173
+G +L+ W F V+ + L
Sbjct: 175 VVGSVVASLTFWWRWAFRGSAVLGVIVGL 203
>gnl|CDD|37743 KOG2532, KOG2532, KOG2532, Permease of the major facilitator
superfamily [Carbohydrate transport and metabolism].
Length = 466
Score = 48.8 bits (116), Expect = 3e-06
Identities = 70/366 (19%), Positives = 123/366 (33%), Gaps = 21/366 (5%)
Query: 42 HLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM--VTINSFTGMLCMRL 99
+ S + GY + QI G L+D+FG + V +I + T + F +L +R
Sbjct: 77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRF 136
Query: 100 IQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIG 159
+QG+G SI+ + + ++I + I+ + S GW
Sbjct: 137 LQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196
Query: 160 IFVCMGVITTFIT-LWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTL--YNIAN 216
IF G++ LW+ ++ L I S + + I
Sbjct: 197 IFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILT 256
Query: 217 SLTMGAIL--GFVNSSQQIYVGIYQLGNL-----FPIAF-----AVGGFAMSIASFINSR 264
S + AI F + + Y L F + A+ AM+I F+ +
Sbjct: 257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQ 316
Query: 265 LVEKFGIRRVSHYSLLIFFMITGSW----LLVQITSNHPIHLLIFIAFFFLASFQFGLIN 320
L ++ R +S ++ F L+ + H L+ + +A G
Sbjct: 317 LSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNI 376
Query: 321 SNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFGIAVSSF 380
S F + AG I F+ + I +++G T F IA
Sbjct: 377 SGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGIL 436
Query: 381 ICILIV 386
I I+
Sbjct: 437 IVGNII 442
>gnl|CDD|37826 KOG2615, KOG2615, KOG2615, Permease of the major facilitator
superfamily [General function prediction only].
Length = 451
Score = 47.6 bits (113), Expect = 6e-06
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Query: 39 YGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMR 98
Y L S + I I+ +G LSDR+GRK V++ L+ +S + +F + R
Sbjct: 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLAR 128
Query: 99 LIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATV---ALSG 155
+ GI +I +II D+ + +S+ F + IL P IG ++SG
Sbjct: 129 FLGGIFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG 187
Query: 156 GWIGIFVCMGVI--TTFITLWYYIRFPETLDPR 186
+ C+ V ++ PETL R
Sbjct: 188 SYPFALPCLLVFILAAGDVTFFPWFLPETLPLR 220
>gnl|CDD|38968 KOG3764, KOG3764, KOG3764, Vesicular amine transporter
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 464
Score = 45.3 bits (107), Expect = 3e-05
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 53 IAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIIT 112
+ F+G L DR G KI M+ GL + +ST + NS+ + R +QG+G A
Sbjct: 121 LVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180
Query: 113 ISIIRDIY-DGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFI 171
++++ D++ + + V+ IA+ + ++ P G +G V V+
Sbjct: 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDG 240
Query: 172 TLWYYIRFPETLDPR 186
L + P +DP
Sbjct: 241 ALQLLVIEPTEMDPD 255
>gnl|CDD|143864 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 43.8 bits (104), Expect = 7e-05
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 18 IDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVI 77
I S ++ ++S + +G I +F G L DRFGRK ++ G V+
Sbjct: 26 IKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVL 85
Query: 78 HIISTFIMVTINSF-TGMLC-MRLIQGIG 104
+I + ML R+I G+G
Sbjct: 86 FVIGALLQGFAKGKSFYMLIVGRVIVGLG 114
Score = 33.0 bits (76), Expect = 0.16
Identities = 30/191 (15%), Positives = 65/191 (34%), Gaps = 18/191 (9%)
Query: 3 FVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYG-PL 61
++ + + + GI+ I P I ++L LS+ + + F L
Sbjct: 254 LLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLV----TIIVGVVNFVFTFIAIFL 309
Query: 62 SDRFGRKIVMMFGLVIHIISTFIM---------VTINSFTGMLCMRLIQGIGGAAPRIIT 112
DRFGR+ +++ G I ++ ++ + L +
Sbjct: 310 VDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVP 369
Query: 113 ISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIG-IFVCMGVITTFI 171
I+ +++ K ++IA + L + GG++ +F + V+
Sbjct: 370 WVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILF 429
Query: 172 TLWYYIRFPET 182
+ PET
Sbjct: 430 V---FFFVPET 437
>gnl|CDD|35475 KOG0254, KOG0254, KOG0254, Predicted transporter (major facilitator
superfamily) [General function prediction only].
Length = 513
Score = 43.6 bits (102), Expect = 1e-04
Identities = 27/131 (20%), Positives = 53/131 (40%)
Query: 43 LISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQG 102
L S +G + + G L DR GRK ++ +V+ +I I+ S+ ++ R++ G
Sbjct: 94 LTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTG 153
Query: 103 IGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFV 162
+G ++ I +I ++S+ + I +L I T + GW
Sbjct: 154 LGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLG 213
Query: 163 CMGVITTFITL 173
+ + L
Sbjct: 214 LALIPAVILAL 224
>gnl|CDD|32452 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 43.3 bits (102), Expect = 1e-04
Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 8/161 (4%)
Query: 26 PKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM 85
P + + LS G L S + I YG+++ G LSDR + M FGL++ I +
Sbjct: 53 PALIEDGGLSKTQLGI-LGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILF 111
Query: 86 VTINSFTGMLCMRLIQGI---GGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMI-MPI 141
S + ++ G G P TI+ + ++ SI I +
Sbjct: 112 GFSPSLFLFAVLWVLNGWFQGMGWPPCARTIT---HWFSRKERGTWWSIWNTSHNIGGAL 168
Query: 142 LAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPET 182
A A GGW F G+I + L +
Sbjct: 169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209
>gnl|CDD|35473 KOG0252, KOG0252, KOG0252, Inorganic phosphate transporter
[Inorganic ion transport and metabolism].
Length = 538
Score = 38.4 bits (89), Expect = 0.003
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 48 LIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM---VTINSFTGML----CMRLI 100
L+G Q+F+G L D+FGRK V L+I II + + V S G++ R +
Sbjct: 94 LVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFL 153
Query: 101 QGIG 104
GIG
Sbjct: 154 LGIG 157
>gnl|CDD|32393 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 37.1 bits (86), Expect = 0.008
Identities = 48/233 (20%), Positives = 86/233 (36%), Gaps = 11/233 (4%)
Query: 133 MMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPE-TLDPRDVRPL 191
+++ ++ P L G AL G+ G + +GVI + L+ + E ++ + +
Sbjct: 163 LLVAVLFPPLVKLFGGGDKAL--GYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG 220
Query: 192 NLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN---LFPIAF 248
+ SF LIFK+R L + N L A + S +Y Y LG+ +
Sbjct: 221 VKLKLKDSFLLIFKNRPLLLLLLMNLLLFIA--FNIRGSIMVYYVTYVLGDPELFAYLLL 278
Query: 249 AVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAF 308
G + I + RLV+KFG +++ LL+ + S I + + IA
Sbjct: 279 LASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAG 338
Query: 309 FFLA---SFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIG 358
+ ++ + G S F + + G I G
Sbjct: 339 VGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391
>gnl|CDD|39884 KOG4686, KOG4686, KOG4686, Predicted sugar transporter
[Carbohydrate transport and metabolism].
Length = 459
Score = 34.6 bits (79), Expect = 0.043
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 62 SDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYD 121
R G I+ +F + +I ++F ML R + GIGG + + +
Sbjct: 108 GIRLGTIILCIFVFLGQLIFA-AGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFK 166
Query: 122 GRDMAKVLSIAMMI--------FMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITL 173
G+++ V + + + F++MP L ++G+ + +G+++C V T +L
Sbjct: 167 GKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSL 226
>gnl|CDD|32637 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 34.0 bits (78), Expect = 0.067
Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 6/159 (3%)
Query: 23 PCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIIST 82
P L +I L LS G L + L+ +G+ L+ RFG + + L++
Sbjct: 33 PLLDEIRQDLGLSFSVAGL-LTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGI 91
Query: 83 FIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPIL 142
I L L G G A ++ S+I+ + + + + + L
Sbjct: 92 LIRSLGGLPLLFLGTLLA-GAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGAGAAL 149
Query: 143 APSIGQATVALSGGW---IGIFVCMGVITTFITLWYYIR 178
A ++ SGGW +G + + ++ I L +R
Sbjct: 150 AAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALR 188
>gnl|CDD|31081 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 32.5 bits (74), Expect = 0.21
Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 7/147 (4%)
Query: 9 MLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRK 68
L + DI++P L ++ L+ + + GY I + G L + G K
Sbjct: 23 FLWGFITCLNDILIPHLKEV---FDLTYFEASL-IQFAFFGGYFIMSLPAGLLIKKLGYK 78
Query: 69 IVMMFGLVIHIISTFIMVT---INSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDM 125
++ GL+++ + + S+ L I G + +
Sbjct: 79 AGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA 138
Query: 126 AKVLSIAMMIFMIMPILAPSIGQATVA 152
A L++A + IL P +G + +
Sbjct: 139 AFRLNLAQAFNGLGAILGPLLGSSLIL 165
>gnl|CDD|35789 KOG0569, KOG0569, KOG0569, Permease of the major facilitator
superfamily [Carbohydrate transport and metabolism].
Length = 485
Score = 30.6 bits (69), Expect = 0.89
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 43 LISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT---INSFTGMLCMRL 99
++S + IG I G L+DRFGRK ++ ++ +++ +M SF ++ RL
Sbjct: 65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRL 124
Query: 100 IQGIGGA 106
I G+
Sbjct: 125 IVGLACG 131
Score = 27.5 bits (61), Expect = 6.7
Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 12/140 (8%)
Query: 53 IAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMV-------TINSFTGMLCMRLIQGIG- 104
++ + L DR GR+ +++ L + ++ +M + S+ LC+ I
Sbjct: 320 LSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFII 379
Query: 105 --GAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFV 162
P I I +++ + S+A + + + + G ++ I
Sbjct: 380 SFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILF 439
Query: 163 CMGVITTFITLWYYIRFPET 182
+ + I L+ Y+ PET
Sbjct: 440 VIPLAIFLIYLYRYL--PET 457
>gnl|CDD|38307 KOG3097, KOG3097, KOG3097, Predicted membrane protein [Function
unknown].
Length = 390
Score = 29.9 bits (67), Expect = 1.2
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 44 ISFYLIGYGI----AQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT 87
I F + +G+ A +G L GR +++ G V+H++ I+
Sbjct: 312 IGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFF 359
>gnl|CDD|48188 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions..
Length = 408
Score = 28.5 bits (64), Expect = 3.0
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 97 MRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQA 149
+ L + +GG A ++ + + I G + FMI+P+ APS +A
Sbjct: 123 LPLYRYLGGLAAYVLPVPMFNVINGGAHAGN--KLDFQEFMIVPVGAPSFSEA 173
>gnl|CDD|144597 pfam01062, Bestrophin, Bestrophin. Bestrophin is a 68-kDa
basolateral plasma membrane protein expressed in retinal
pigment epithelial cells (RPE). It is encoded by the
VMD2 gene, which is mutated in Best macular dystrophy, a
disease characterized by a depressed light peak in the
electrooculogram. VMD2 encodes a 585-amino acid protein
with an approximate mass of 68 kDa which has been
designated bestrophin. Bestrophin shares homology with
the Caenorhabditis elegans RFP gene family, named for
the presence of a conserved arginine (R), phenylalanine
(F), proline (P), amino acid sequence motif. Bestrophin
is a plasma membrane protein, localized to the
basolateral surface of RPE cells consistent with a role
for bestrophin in the generation or regulation of the
EOG light peak. Bestrophin and other RFP family members
represent a new class of chloride channels, indicating a
direct role for bestrophin in generating the light peak.
The VMD2 gene underlying Best disease was shown to
represent the first human member of the RFP-TM protein
family. More than 97% of the disease-causing mutations
are located in the N-terminal RFP-TM domain implying
important functional properties.
Length = 275
Score = 28.2 bits (64), Expect = 4.2
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 302 LLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIF-GFINT 347
LL+F+ L + + S + PF+ L G A SIF GF N
Sbjct: 19 LLLFLLLSALVVVIYRYLLSQKIFLPAAPFT-LLGIALSIFLGFRNN 64
>gnl|CDD|35856 KOG0637, KOG0637, KOG0637, Sucrose transporter and related proteins
[Carbohydrate transport and metabolism].
Length = 498
Score = 27.9 bits (62), Expect = 5.3
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 23/153 (15%)
Query: 253 FAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFF--- 309
+ I S + +L KFG R+ + F + TG LV T H
Sbjct: 343 IVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPL 402
Query: 310 ----FLASFQFGLINSNFSSISMEPFSHLAGTAS-------------SIFGFINTVISTI 352
+ A + ++ + PF+ + + I V+ ++
Sbjct: 403 LTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSL 462
Query: 353 LGIIIGQSFNGTTYPITIGFFGIAVSSFICILI 385
+ Q F G P F AV+ I ++
Sbjct: 463 GLGPLDQLFGGGNLP---AFVSGAVALLIGGIV 492
>gnl|CDD|30497 COG0148, Eno, Enolase [Carbohydrate transport and metabolism].
Length = 423
Score = 27.9 bits (62), Expect = 5.7
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 97 MRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQA 149
+ L + +GG ++ + ++ ++ +G A ++ + FMIMP+ A S +A
Sbjct: 127 IPLYRYLGGLNALVLPVPMM-NVINGGAHADN-NLDIQEFMIMPVGAESFKEA 177
>gnl|CDD|31175 COG0833, LysP, Amino acid transporters [Amino acid transport and
metabolism].
Length = 541
Score = 27.4 bits (61), Expect = 7.5
Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 2/175 (1%)
Query: 212 YNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAMSIASFINSRLVEKFGI 271
++ + G ++ ++ +Y + LG L G F+ F++ G
Sbjct: 70 KALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDPAFGFALGW 129
Query: 272 RRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPF 331
++++ + +T + L++Q + I+IA F + F L + F
Sbjct: 130 NYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWF 189
Query: 332 SHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFGIAVSSFICILIV 386
S + I GFI I I G + G Y G F F + ++
Sbjct: 190 SSIKVLT--IIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVI 242
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.333 0.146 0.437
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,976,155
Number of extensions: 294167
Number of successful extensions: 1667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1583
Number of HSP's successfully gapped: 315
Length of query: 398
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 302
Effective length of database: 4,189,273
Effective search space: 1265160446
Effective search space used: 1265160446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.3 bits)