RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780967|ref|YP_003065380.1| probable multidrug resistance
transporter protein [Candidatus Liberibacter asiaticus str. psy62]
         (398 letters)



>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
           Provisional.
          Length = 377

 Score =  168 bits (429), Expect = 2e-42
 Identities = 97/387 (25%), Positives = 191/387 (49%), Gaps = 17/387 (4%)

Query: 9   MLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRK 68
           MLM    L ID+ LP LP I+    +S  +  Q  +S Y++G+ I Q+FYGP++D FGRK
Sbjct: 1   MLM---PLAIDMYLPALPVIAADFGVSAGSV-QMTLSAYILGFAIGQLFYGPMADSFGRK 56

Query: 69  IVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKV 128
            V++ G ++  ++        +   ++ MR + G+  AA  ++  +++RD++   + +++
Sbjct: 57  PVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRM 116

Query: 129 LSIAMMIFMIMPILAPSIGQATVALSGGWIGIF---VCMGVITTFITLWYYIRFPETLDP 185
           +S   ++  I P+LAP IG   + +   W  IF       ++   +  +     PETL  
Sbjct: 117 MSFVTLVMTIAPLLAPIIGGW-LLVWFSWHAIFWVLALAAILAAALVFF---FIPETLPK 172

Query: 186 RDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLG-NLF 244
              +P +L   + +F+ +F+H+    Y +A+  +   +  F+ +   +Y+ +  +    F
Sbjct: 173 ERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNF 232

Query: 245 PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWL-LVQITSNHPIHLL 303
              FA+    + + + INSR V + G   +  + L I F I G WL +  +       L+
Sbjct: 233 GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQF-IMGIWLVVSALLDLGFWALV 291

Query: 304 IFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNG 363
           + +A F        +I+SN  ++ ++ F H+AGTASS+ G +   I  I+G ++  +   
Sbjct: 292 VGVAAFV---GCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLAPFT 348

Query: 364 TTYPITIGFFGIAVSSFICILIVEKNQ 390
           + +P+       ++ S +  L   + +
Sbjct: 349 SAWPMVWSMAFCSILSILFYLYASRPK 375


>gnl|CDD|162006 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
           subfamily.  This subfamily of drug efflux proteins, a
           part of the major faciliator family, is predicted to
           have 12 membrane-spanning regions. Members with known
           activity include Bcr (bicyclomycin resistance protein)
           in E. coli, Flor (chloramphenicol and florfenicol
           resistance) in Salmonella typhimurium DT104, and CmlA
           (chloramphenicol resistance) in Pseudomonas sp. plasmid
           R1033.
          Length = 385

 Score =  166 bits (423), Expect = 7e-42
 Identities = 99/380 (26%), Positives = 191/380 (50%), Gaps = 7/380 (1%)

Query: 3   FVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLS 62
           F +++  L  +  LGID+ LP  P+I+  L        Q  ++ YL+G+   Q+ +GPLS
Sbjct: 6   FALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV-QMTLTLYLLGFAAGQLLWGPLS 64

Query: 63  DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDG 122
           DR+GR+ V++ GL I  +S+  +   N+   +L +R +Q  G +A  +I+ +++RDIY G
Sbjct: 65  DRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPG 124

Query: 123 RDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPET 182
            +++++ SI M +  + P +AP +G   + +   W  IF  + +    ++   +   PET
Sbjct: 125 EELSRIYSILMPVLALAPAVAPLLG-GYILVWLSWHAIFAFLSLAGILLSALIFFILPET 183

Query: 183 LDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN 242
           L       ++ Y    +F L+ K +    Y +    + G    F + +  +Y+ I  +  
Sbjct: 184 LPYEARIQISTYF--ETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSP 241

Query: 243 L-FPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIH 301
             F + FA+   AM    F+N R ++K+G + +    L++F  ++   L +         
Sbjct: 242 SVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFA-VSAVLLEITAILGLGSW 300

Query: 302 LLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSF 361
            +I     F+      +I+S   + ++E F H+AGTAS++FG +  V+  I+G ++    
Sbjct: 301 AMIIGPMMFVG-IGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIH 359

Query: 362 NGTTYPITIGFFGIAVSSFI 381
             T +P+++    +AV S +
Sbjct: 360 GNTAWPMSLSCLVLAVVSVL 379


>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
          Length = 394

 Score =  114 bits (287), Expect = 6e-26
 Identities = 93/356 (26%), Positives = 170/356 (47%), Gaps = 39/356 (10%)

Query: 3   FVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLS 62
            + ++ +L+A+  +   I +P +  ++  L++  E   Q +++ YL+ YG++Q+FYGPLS
Sbjct: 9   LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVR-EGAVQAVMAAYLLTYGLSQLFYGPLS 67

Query: 63  DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDG 122
           DR GR+ V++ G+ I I+ T + +  +S T ++    IQG+G     ++  ++ RD+Y+G
Sbjct: 68  DRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG 127

Query: 123 RDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPET 182
             +    S+  M  ++ P+LAP IG     L  GW   ++ + ++   +T       PET
Sbjct: 128 TQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGAGVTFSMARWMPET 186

Query: 183 LDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN 242
             P D R   +   L S+  +  +R    Y +    T+  I  F   S  +   +  L +
Sbjct: 187 R-PADARRTRV---LASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSS 242

Query: 243 -----LF----PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLL------IFFMITG 287
                LF    P AF    FA         R  ++F    +   S++      +   I G
Sbjct: 243 MTVSILFILPIPAAFFGAWFA--------GRPNKRF--STLMWQSVICCLLAGLLMWIPG 292

Query: 288 SWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFG 343
            + ++ + +     LL+  A FF  +   G++    +S +MEPF +LAGTA ++ G
Sbjct: 293 WFGVMNVWT-----LLVPAALFFFGA---GMLFPLATSGAMEPFPYLAGTAGALLG 340


>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
           Provisional.
          Length = 392

 Score = 89.3 bits (222), Expect = 2e-18
 Identities = 97/350 (27%), Positives = 148/350 (42%), Gaps = 55/350 (15%)

Query: 16  LGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGL 75
            GID+ L  LP+I+  L+ S E       S YL G   A +F G ++DR GRK V + G 
Sbjct: 17  AGIDMYLVGLPRIAADLNAS-EAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGA 75

Query: 76  VIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMI 135
            + II++ +     + +  L  R +QGIG     ++  +I+RD  D R  AKVLS+   I
Sbjct: 76  ALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGI 135

Query: 136 FMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYA 195
             I+P+LAP +G   + L   W  +F  M  +   + L       ET   R     +   
Sbjct: 136 TCIIPVLAPVLGH-LIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAASSK-P 193

Query: 196 ILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAM 255
             +S SL+ +   S L  +  +L++  IL FVN+S  + +   Q+G      F+ G +A+
Sbjct: 194 RENSESLLNRFFLSRL--VITTLSVTVILTFVNTSPVLLME--QMG------FSRGEYAI 243

Query: 256 SIA---------SFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFI 306
            +A         SF     +  F  R +   S ++F                    L   
Sbjct: 244 IMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF--------------------LAAG 283

Query: 307 AFFFLASFQ------FGLINSNFS-------SISMEPFSHLAGTASSIFG 343
               L+           LI + FS       S ++ PFS  AG ASS  G
Sbjct: 284 ITLALSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLG 333


>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
          Length = 401

 Score = 84.9 bits (211), Expect = 3e-17
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 2/166 (1%)

Query: 3   FVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLS 62
           F++ +A L  +  L  D+ LP    I   L  S       L S +L G+ + Q+ +GPLS
Sbjct: 7   FLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASL-SLFLAGFALGQLLWGPLS 65

Query: 63  DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDG 122
           DR+GRK V++ GL +  + +  M+ + S   +L +R +Q +G  +  +I  +++ D Y  
Sbjct: 66  DRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA 125

Query: 123 RDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVIT 168
           +   +V +  M +  + P LAP +G A +    GW  IF  +  IT
Sbjct: 126 QKANRVFATIMPLVALSPALAPLLG-AWLLNHFGWQAIFATLFAIT 170


>gnl|CDD|148990 pfam07690, MFS_1, Major Facilitator Superfamily. 
          Length = 345

 Score = 84.0 bits (208), Expect = 6e-17
 Identities = 73/348 (20%), Positives = 147/348 (42%), Gaps = 7/348 (2%)

Query: 7   IAMLMAINSLGIDIILPCLPK-ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRF 65
           + +   +  LG  ++ P LP  +++ L +S    G  L++ + +GY +AQ   G LSDRF
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIG-LLLTAFSLGYALAQPLAGRLSDRF 59

Query: 66  GRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDM 125
           GR+ V++ GL++  +   +++  +S   +L +R++QG+GG A      ++I D +   + 
Sbjct: 60  GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119

Query: 126 AKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLDP 185
            + L +    F +   L P +G   +A   GW   F+ + ++     +   +  P     
Sbjct: 120 GRALGLLSAGFGLGAALGPLLG-GLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPE 178

Query: 186 RDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNL-F 244
                    A           R   L+ +   L  G     + +   +Y  +  L  L  
Sbjct: 179 SKRPKPAEEAPAPLVPWKLLLRDPVLWLLLALLLFGFAFFALFTYLPLYQEVLGLSALLA 238

Query: 245 PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLI 304
            +   + G   +I   +  RL ++ G RR    +LL+  +      L+ +T +    L+ 
Sbjct: 239 GLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 298

Query: 305 FIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTI 352
            +   F A   F  +N+  S ++ +      GTAS ++    ++   +
Sbjct: 299 LLLLGFGAGLVFPALNALASDLAPK---EERGTASGLYNTAGSLGGAL 343


>gnl|CDD|162085 TIGR00880, 2_A_01_02, Multidrug resistance protein. 
          Length = 141

 Score = 76.9 bits (190), Expect = 9e-15
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 45  SFYLIGYGIAQIFYGPLS----DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLI 100
              L GY + Q+ Y PLS    DRFGRK V++ GL I ++ST +    ++ T ++  R +
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 101 QGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGI 160
           QG G A   +   ++I DIY   +    L +      + P+L P +G   +A   GW   
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG-GVLAQFLGWRAP 119

Query: 161 FVCMGVITTFITLWYYIRFPET 182
           F+ + ++     +      PET
Sbjct: 120 FLFLAILALAAFILLAFLLPET 141


>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
           Provisional.
          Length = 406

 Score = 71.1 bits (175), Expect = 5e-13
 Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 7/194 (3%)

Query: 16  LGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGL 75
           +  D+I P +  + +  +   E +    ++ YL G    Q   GPLSDR GR+ VM+ G+
Sbjct: 27  IANDMIQPGMLAVVEDFNAGAE-WVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV 85

Query: 76  VIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMI 135
              I++   ++   S      +R +QGIG      +  + I++ ++  D  K+ ++   +
Sbjct: 86  AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANV 145

Query: 136 FMIMPILAPSIGQATVALSGGWIGIFVCMGVIT--TFITLWYYIRFPETLDPRDVRPLNL 193
            ++ P+L P +G A + +   W G+FV    +   +F  LW  +  PET        L+L
Sbjct: 146 ALLAPLLGPLVGAALIHV-LPWRGMFVLFAALAALSFFGLWRAM--PETAGRVG-EKLSL 201

Query: 194 YAILHSFSLIFKHR 207
             +   + L+ K+R
Sbjct: 202 KELGRDYKLVLKNR 215


>gnl|CDD|185301 PRK15403, PRK15403, multidrug efflux system protein MdtM;
           Provisional.
          Length = 413

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 9/228 (3%)

Query: 44  ISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI 103
           +S YL G    Q   GPLSDR GR+ V++ G +I  ++    +   S T  L  R IQG 
Sbjct: 57  VSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGT 116

Query: 104 GGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVC 163
                  +    +++ +      K+++I   I ++ PI+ P  G A +     W  +F  
Sbjct: 117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-HWKVLFAI 175

Query: 164 MGVITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAI 223
           + V+     +   +  PET+  R   P +  ++L  F  +F++R         SL+   +
Sbjct: 176 IAVMGLIAFVGLLLAMPETVK-RGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPM 234

Query: 224 LGFVNSSQQIYVGIYQLGNLFPIAFA---VGGF-AMSIASFINSRLVE 267
           + +V  S  I +     G +    FA   V  F A+ +A+ I +R V+
Sbjct: 235 MSWVAVSPVILI---DAGGMTTSQFAWTQVPVFGAVIVANAIVARFVK 279


>gnl|CDD|162090 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
           
          Length = 366

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 71/338 (21%), Positives = 127/338 (37%), Gaps = 28/338 (8%)

Query: 28  ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT 87
           I D L LS    G  L++  ++   + +I  G L D+FG +      L++  I       
Sbjct: 28  IKDDLGLSTAQLGN-LVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86

Query: 88  IN-SFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIA--------MMIFMI 138
              S++ +L +RL  GI G +     +  I   +  +     L +A         +   +
Sbjct: 87  AVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFV 145

Query: 139 MPILAPSIGQAT---VALSGGWIGIFVCMGVI--TTFITLWYYIRFP------ETLDPRD 187
           MP +  S+         L+ GW  + V  G++     +  +     P        L  + 
Sbjct: 146 MPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKG 205

Query: 188 VRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIA 247
            R       L     +F+ R + +  +  S+T G+ LG  +     +   + L  +   A
Sbjct: 206 ARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGA 265

Query: 248 FA-VGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFI 306
           +A +GG   S+A  +   + ++ G  R     L+ F  +     LV +    P+ L +FI
Sbjct: 266 YASLGGLLGSLARPLGGAISDRLGGARK---LLMSFLGVAMGAFLVVLGLVSPLSLAVFI 322

Query: 307 AFFFLASFQFGLIN-SNFSSISMEPFSHLAGTASSIFG 343
             F    F  G  N S F+ +    F    G  S + G
Sbjct: 323 VLFVALFFFSGAGNGSTFALVPHI-FRRATGAVSGLVG 359


>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
           subfamily.  This subfamily of drug efflux proteins, a
           part of the major faciliator family, is predicted to
           have 14 potential membrane-spanning regions. Members
           with known activities include EmrB (multiple drug
           resistance efflux pump) in E. coli, FarB (antibacterial
           fatty acid resistance) in Neisseria gonorrhoeae, TcmA
           (tetracenomycin C resistance) in Streptomyces
           glaucescens, etc. In most cases, the efflux pump is
           described as having a second component encoded in the
           same operon, such as EmrA of E. coli.
          Length = 485

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 11/178 (6%)

Query: 1   MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60
           +  V+++   MA+  L   I+   +P I+  L  S     Q +I+ Y++   I+    G 
Sbjct: 3   LTIVLMLGTFMAV--LDSTIVNVAIPTIAGDLGSSLSQ-VQWVITSYMLANAISIPLTGW 59

Query: 61  LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIY 120
           L+ RFG + + +       + + +     +   M+  R+IQG GG     ++ S + +IY
Sbjct: 60  LAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY 119

Query: 121 DGRDMAKVLSIAMMIFMIMPILAPSI-GQATVALSGGW-------IGIFVCMGVITTF 170
                 + ++I  +  ++ P L P++ G         W       IGI V +      
Sbjct: 120 PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFIL 177


>gnl|CDD|162095 TIGR00895, 2A0115, benzoate transport. 
          Length = 398

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 2/181 (1%)

Query: 4   VIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSD 63
           +I+  ++M ++   +  +    P IS    L     G  L S  LIG     +F+GPL+D
Sbjct: 19  IILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLG-FLFSAGLIGMAFGALFFGPLAD 77

Query: 64  RFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGR 123
           R GRK V+++ +++  + T +     + T +L +R + G+G         +++ +    R
Sbjct: 78  RIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR 137

Query: 124 DMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETL 183
                + +    + I   +   +    + +  GW  +F   G+    + L      PE++
Sbjct: 138 FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWRSLFYVGGIAPLLLLLLLMRFLPESI 196

Query: 184 D 184
           D
Sbjct: 197 D 197



 Score = 32.3 bits (74), Expect = 0.23
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 53  IAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI 103
           I  I +G L+DR G ++  +  L+  + +  +  T+ S T +L +  I G 
Sbjct: 300 IGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGF 350


>gnl|CDD|162086 TIGR00881, 2A0104, phosphoglycerate transporter family protein. 
          Length = 379

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 62/360 (17%), Positives = 120/360 (33%), Gaps = 36/360 (10%)

Query: 25  LPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI 84
           +P + + + LS  + G  L SF  I YGI++   G +SDR   ++ +  GL++  I    
Sbjct: 18  MPYLVEEIGLSKTDLGLLLSSFS-IAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76

Query: 85  MVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAP 144
                S   M  +  + GI            +   +   +    +S       +   L P
Sbjct: 77  FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136

Query: 145 SIGQATVALSGGWIGIFV---CMGVITTFITLWYY--------------IRFPETLDPRD 187
            +    +A    W  +F+    + +I + I                   +   E     +
Sbjct: 137 PLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAE 196

Query: 188 VRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYV----GIYQL-GN 242
            +   L         +  ++     ++          G ++ S  +Y+    G  +   +
Sbjct: 197 KKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWS-PLYLTQEKGFSKEKAS 255

Query: 243 LFPIAFAVGGFAMSIASFINSRLVEKFGIRRVS---HYSLLIFFMITGSWLLVQITSNHP 299
                + +GG   ++ +   S  +  F  RR      +  LI   +   WL     +N  
Sbjct: 256 WAFTLYELGGLVGTLLAGWLSDKL--FNGRRGPLAVFFMALIIVSLLVYWLNP--AANPL 311

Query: 300 IHLLIFIAFFFLASFQFGLINSNFSSISME-PFSHLAGTASSIFGFINTVISTILGIIIG 358
           + L   I  F L    +G        I+ E      AGTA+   GF   +   + G+ +G
Sbjct: 312 MDL---ICLFALGFLVYGPQML-IGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG 367


>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2.  This model
           describes a tightly conserved subfamily of the larger
           family of sugar (and other) transporters described by
           pfam model pfam00083. Members of this subfamily include
           closely related forms SV2A and SV2B of synaptic vesicle
           protein from vertebrates and a more distantly related
           homolog (below trusted cutoff) from Drosophila
           melanogaster. Members are predicted to have two sets of
           six transmembrane helices.
          Length = 742

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 5/148 (3%)

Query: 6   VIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRF 65
           V+ + +  + + + ++   LP     L + +   G  L     +G  +   F+G L+D+ 
Sbjct: 171 VLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGM-LGLIVYLGMMVGAFFWGGLADKL 229

Query: 66  GRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQ--GIGGAAPRIITISIIRDIYDGR 123
           GRK  ++  L ++    F    +  +   L  RL+   GIGGA P  I  S   +     
Sbjct: 230 GRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIP--IVFSYFAEFLAQE 287

Query: 124 DMAKVLSIAMMIFMIMPILAPSIGQATV 151
              + LS   M +MI  I A ++  A +
Sbjct: 288 KRGEHLSWLCMFWMIGGIYAAAMAWAII 315


>gnl|CDD|162097 TIGR00898, 2A0119, cation transport protein. 
          Length = 505

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 44  ISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI 103
            S + +G  +    +G LSDRFGRK V++   ++  +S  +     ++T  L  RL+ G+
Sbjct: 133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGM 192

Query: 104 GGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVC 163
           G     +  + +  +    +  A V ++  + F +  +L P +          W  + + 
Sbjct: 193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLA 248

Query: 164 MGVITTFITLWYYIRFPE 181
           + +  TF+        PE
Sbjct: 249 VSL-PTFLFFLLSWFVPE 265


>gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional.
          Length = 476

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 23  PCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIIST 82
           P LP I D+L+L+  + G   I   + G   +++  GP+ D +G +    F L++   + 
Sbjct: 57  PLLPIIRDNLNLTKSDIGNAGI-ASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAV 115

Query: 83  FIMVTINSFTGMLCMRLIQGIGGAA 107
           F M  ++S TG + +R   G   A 
Sbjct: 116 FCMSLVSSATGFIAVRFFIGFSLAT 140


>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  This
           family consists of several fungal specific trichothecene
           efflux pump proteins. Many of the genes involved in
           trichothecene toxin biosynthesis in Fusarium
           sporotrichioides are present within a gene cluster.It
           has been suggested that TRI12 may play a role in F.
           sporotrichioides self-protection against trichothecenes.
          Length = 598

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 45  SFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIG 104
           + + +G  ++ +  G L+DRFGR+  ++   +I ++   +  T N F  +L    + G+ 
Sbjct: 85  TLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLAAMTLLGV- 143

Query: 105 GAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIF--- 161
            A P   +   I ++   +     L I     + M    P  GQ  +A+ G W  IF   
Sbjct: 144 AAGPAGASPLFIGELMSNKTKFLGLLIVSAPTIAMNGAGPYFGQ-RLAIQGNWRWIFYIY 202

Query: 162 -VCMGVITTFITLWYY 176
            +   +    I +WY+
Sbjct: 203 IIMSAIAVLLIIIWYH 218


>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. 
          Length = 365

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 47/288 (16%), Positives = 96/288 (33%), Gaps = 25/288 (8%)

Query: 47  YLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTG-----MLCMRLIQ 101
            ++ Y +     G L+DR+ RK VM+   +I  +   ++  +    G     +  +  I 
Sbjct: 43  GMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGIL 102

Query: 102 GIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIF 161
            I  A       +++ D+     + +  S++  +  +  I+ P IG    A  G    I+
Sbjct: 103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162

Query: 162 VCMGVITTFITLWYYIRFPE-TLDPRDVRPLNLYA-ILHSFSLIFKHR-------ASTLY 212
           V          L   +R PE            +          + K+         + L+
Sbjct: 163 VDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLF 222

Query: 213 NIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAMSIASFINSRLVEKFGIR 272
           N+  +  + A+  +V   Q  Y+G       +    A  G    + + +    +   G  
Sbjct: 223 NLVFAPAIVALFPYV---QSKYLGRGST--HYGWVLAAFGLGALLGALL----LGLLGRY 273

Query: 273 RVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLIN 320
                 +     + G  +LV   +     L + + F       +G IN
Sbjct: 274 FKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFA--IGVGYGPIN 319


>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
          Length = 496

 Score = 35.8 bits (83), Expect = 0.020
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 3/160 (1%)

Query: 25  LPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI 84
           L ++     L+       LIS   I      +  G + DR+GR++ M+  +V+  + T  
Sbjct: 43  LTEVQGEFGLTTVQ-AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLA 101

Query: 85  MVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAP 144
                 +  +   RL+ G+G A     + + + + +      K     +  F I  ++A 
Sbjct: 102 CGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAA 161

Query: 145 SIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLD 184
            +  + V    GW  +F  +G++     LW     PE  D
Sbjct: 162 QV-YSLVVPVWGWRALFF-IGILPIIFALWLRKNLPEAED 199


>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
           Provisional.
          Length = 490

 Score = 35.8 bits (83), Expect = 0.020
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 8/80 (10%)

Query: 28  ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRK---IVMMFGLVIHIISTFI 84
           +S +LH S E++G  +I   +IG    Q   G LSDRFGR+   I+    L +  I  FI
Sbjct: 277 LSHNLHYS-EDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFI 335

Query: 85  MVTINS----FTGMLCMRLI 100
           ++  N     F G+L + +I
Sbjct: 336 LINSNVIGLIFAGLLMLAVI 355



 Score = 30.4 bits (69), Expect = 0.83
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 56  IFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSF 91
           +F+G L D++GR+ ++   +VI  ISTF +  I S+
Sbjct: 75  LFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSY 110


>gnl|CDD|162092 TIGR00891, 2A0112, putative sialic acid transporter. 
          Length = 405

 Score = 34.9 bits (80), Expect = 0.043
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 43  LISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQG 102
           LIS  LI      + +G   DR+GR++ M+  +V+    T        +  M   RL+ G
Sbjct: 52  LISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIG 111

Query: 103 IG 104
           IG
Sbjct: 112 IG 113



 Score = 28.7 bits (64), Expect = 2.7
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 3   FVIVIAMLMAIN--SLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60
           FV ++ +++  N  S  I  +LP   K    L   + +   +++ F  IG  +    +G 
Sbjct: 240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGL---SPHTVANIVVFSNIGAIVGGCVFGF 296

Query: 61  LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCM------RLIQGIGGAAPRIIT 112
           L D  GR+   +  L+   +    +  I +   +L +       L+QGI G  P+ + 
Sbjct: 297 LGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLG 354


>gnl|CDD|162040 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
            GPH:cation symporters catalyze uptake of sugars in
           symport with a monovalent cation (H+ or Na+). Members of
           this family includes transporters for melibiose,
           lactose, raffinose, glucuronides, pentosides and
           isoprimeverose. Mutants of two groups of these
           symporters (the melibiose permeases of enteric bacteria,
           and the lactose permease of Streptococcus thermophilus)
           have been isolated in which altered cation specificity
           is observed or in which sugar transport is uncoupled
           from cation symport (i.e., uniport is catalyzed). The
           various members of the family can use Na+, H+ or Li, Na+
           or Li+, H+ or Li+, or only H+ as the symported cation.
           All of these proteins possess twelve putative
           transmembrane a-helical spanners.
          Length = 437

 Score = 33.8 bits (78), Expect = 0.078
 Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 9/166 (5%)

Query: 156 GWIGIFVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIA 215
            +  +   +GV++  I    +    E             ++   F  +FK+    +  +A
Sbjct: 174 MFALVLALIGVVSLIIC---FFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLA 230

Query: 216 NSLTMGAILGFVNSSQQIYVGIYQLG--NLFPIAFAVGGFAMSIASFINSRLVEKFGIRR 273
                 A    + +  Q+Y   Y LG   LF    ++   A  I   +  RLV+KFG + 
Sbjct: 231 YLFYNLAF--NIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI 288

Query: 274 VSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLI 319
           +    +L+  M+ G  +     SN P+ L++ I   F  +F  GL+
Sbjct: 289 LFAGGILL--MVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLV 332


>gnl|CDD|183191 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
           MhpT; Provisional.
          Length = 406

 Score = 33.0 bits (76), Expect = 0.12
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 56  IFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI--GGAAPRIITI 113
           +  G L+DR GRK +++  + +  + +        F  +L  RL+ G+  GGA P +I +
Sbjct: 68  LLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIAL 127

Query: 114 S 114
           +
Sbjct: 128 T 128


>gnl|CDD|179633 PRK03699, PRK03699, putative transporter; Provisional.
          Length = 394

 Score = 33.0 bits (76), Expect = 0.14
 Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 11/145 (7%)

Query: 28  ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT 87
           I++  +L   +      +F   G  I+      L +    K  ++FG  + I++   ++ 
Sbjct: 33  IAEYFNLPVSSMSN-TFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF 91

Query: 88  INS-FTGMLCMRLIQGIGGAAPRIITISI----IRDIYDGRDMAKVLSIAMMIFMIMPIL 142
            +S     + M ++  + G     IT+SI    I  +Y+G+     L      F +  ++
Sbjct: 92  SHSLALFSIAMFVLGVVSG-----ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI 146

Query: 143 APSIGQATVALSGGWIGIFVCMGVI 167
            P I    +A S  W  ++ C+G++
Sbjct: 147 FPIIAAYLLARSIEWYWVYACIGLV 171


>gnl|CDD|183424 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
          Length = 426

 Score = 33.0 bits (75), Expect = 0.15
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 2/135 (1%)

Query: 48  LIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAA 107
            IG       +G L+D+FGRK +MM+ +V + + T +    +    +   R I G+G A 
Sbjct: 63  FIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAG 122

Query: 108 PRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVI 167
                 +   + +     +K  +  +  F I  I+A      + A + GW   F  +G++
Sbjct: 123 EYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF-MPSFAEAYGWRAAFF-VGLL 180

Query: 168 TTFITLWYYIRFPET 182
              + ++   R PE+
Sbjct: 181 PVLLVIYIRARAPES 195


>gnl|CDD|162087 TIGR00883, 2A0106, metabolite-proton symporter.  This model
           represents the metabolite:H+ symport subfamily of the
           major facilitator superfamily (pfam00083), including
           citrate-H+ symporters, dicarboxylate:H+ symporters, the
           proline/glycine-betaine transporter ProP, etc.
          Length = 394

 Score = 32.6 bits (75), Expect = 0.16
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 17/135 (12%)

Query: 48  LIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTF----IMVTINSFTGMLCMRLIQGI 103
           LI + I     G LSDR GR+ V++   V+  +        ++   SFT    + L   +
Sbjct: 265 LILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLAL 324

Query: 104 GGAAPRIITISIIRDI------YDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGW 157
            G        S + ++      Y G  +A  L+ A     I    AP I  A VA++G W
Sbjct: 325 IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGA-----IFGGFAPYIAAALVAMTGDW 379

Query: 158 --IGIFVCMGVITTF 170
             IG ++    +   
Sbjct: 380 YAIGYYLAALALIGL 394



 Score = 29.5 bits (67), Expect = 1.5
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 56  IFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTG--------MLCMRLIQGIG 104
           I +G   DR GRK  ++  L++  I T ++  + S+          +L  RLIQG  
Sbjct: 53  IVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109


>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
          Length = 382

 Score = 32.8 bits (75), Expect = 0.18
 Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 20  IILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHI 79
            I+  L +++  + +S    G H+IS+Y +G  +        S R+  K +++F + + +
Sbjct: 21  GIMGVLTELAHDVGISIPAAG-HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCV 79

Query: 80  ISTFIMVTINSFTGMLCMRLIQG 102
           I   +    +S+  +   RL+ G
Sbjct: 80  IGNAMFTLSSSYLMLAIGRLVSG 102


>gnl|CDD|147889 pfam05977, DUF894, Bacterial protein of unknown function (DUF894). 
           This family consists of several bacterial proteins, many
           of which are annotated as putative transmembrane
           transport proteins.
          Length = 524

 Score = 32.3 bits (74), Expect = 0.20
 Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 29/235 (12%)

Query: 56  IFYGPLSDRFGRKIVMMFG-LVIHIISTFIMVTINSFTGM------LCMRLIQGIGGAAP 108
           I  G ++D F R+ VM+ G L++ I S  + V   +  G+      L    + GIG A  
Sbjct: 63  IPAGAIADNFDRRKVMLAGQLLMAIASALLTVL--AALGLLSPWLLLAFTFLIGIGTALN 120

Query: 109 RIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVIT 168
                + + D+   RD+   +++  + + +   + P++G   VA  G      V    ++
Sbjct: 121 DPAWQASVGDLVPRRDVPAAVALNSVGYNLARSVGPALGGLLVAAFGAATAFAV--NALS 178

Query: 169 TFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVN 228
            F  +    R+   + P  +   NL+  L +  L +    S    I + L   A  G   
Sbjct: 179 YFAVIVAIARWKRDVPPSPLPRENLFGALRA-GLRYT-AMSR--EIRSVLVRAAAFGLSA 234

Query: 229 SS----------QQIYVGIYQLGNLFPIAFAVGGFAMSIASFINSRLVEKFGIRR 273
           S+            +       G L   AF  G       + I SRL  +    R
Sbjct: 235 SAVWALLPLVARDLLGGDAGFYGILLG-AFGAGAVL---GALILSRLRRRLSSER 285


>gnl|CDD|163048 TIGR02865, spore_II_E, stage II sporulation protein E.  Stage II
           sporulation protein E (SpoIIE) is a multiple membrane
           spanning protein with two separable functions. It plays
           a role in the switch to polar cell division during
           sporulation. By means of it protein phosphatase
           activity, located in the C-terminal region, it activates
           sigma-F. All proteins that score above the trusted
           cutoff to this model are found in endospore-forming
           Gram-positive bacteria. Surprisingly, a sequence from
           the Cyanobacterium-like (and presumably
           non-spore-forming) photosynthesizer Heliobacillus
           mobilis is homologous, and scores between the trusted
           and noise cutoffs.
          Length = 764

 Score = 31.2 bits (71), Expect = 0.47
 Identities = 14/74 (18%), Positives = 28/74 (37%)

Query: 196 ILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAM 255
           I     L+  +   +    A  + +G ILG  N++    +G++    L    F   G   
Sbjct: 181 IARLAVLLISYIGGSGAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIG 240

Query: 256 SIASFINSRLVEKF 269
           +   ++   L+  F
Sbjct: 241 TGIGYLVGFLILAF 254



 Score = 31.2 bits (71), Expect = 0.53
 Identities = 29/148 (19%), Positives = 45/148 (30%), Gaps = 25/148 (16%)

Query: 246 IAFAVGGFAMSIASFINSRLVEKFGI------RRVSHYSLLIFFMITGSWL-LVQITSNH 298
           I F V  F +  A  ++   +  FGI                FF   G  L  + I   H
Sbjct: 1   IIFFVIAFLLGRAVIVSP--MAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISIQPKH 58

Query: 299 PIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIG 358
            +  L+ +A   L S+     N      ++ P          I  F+   +  I G    
Sbjct: 59  SLKYLLLVAVIILLSYVLK--NLTDKKKTVVPP---------IVVFLEAAVYAIFGY--- 104

Query: 359 QSFNGTTYPITIGFFGIAVSSFICILIV 386
              N    P+      I  +S   +L  
Sbjct: 105 -LQNKLVTPLDF-ILSIVEASLSFVLYY 130


>gnl|CDD|162084 TIGR00879, SP, MFS transporter, sugar porter (SP) family.  This
           model represent the sugar porter subfamily of the major
           facilitator superfamily (pfam00083).
          Length = 481

 Score = 31.2 bits (71), Expect = 0.52
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 44  ISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM--VTINSFTGMLCM-RLI 100
           +S +L+G  I  +F G LSDRFGRK  ++   ++ +I   +M          ML + R++
Sbjct: 77  VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVL 136

Query: 101 QGIG 104
            GIG
Sbjct: 137 LGIG 140


>gnl|CDD|151127 pfam10599, Nup_retrotrp_bd, Retro-transposon transporting motif.
           This is the highly conserved C-terminal motif
           GRKIxxxxxRRKx of nucleoporins that plays a critical and
           unique role in the nuclear import of retro-transposons
           in both yeasts and higher organisms. It would appear
           that the arginine residues at positions 2 and 9-10
           constitute a bipartite nuclear localisation signal, with
           two basic peptide motifs separated by an interchangeable
           spacer sequence, that is crucial for the
           retro-transposon activity.
          Length = 101

 Score = 30.9 bits (69), Expect = 0.56
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 312 ASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTY 366
           + F  G  N+NF+        H + T S+ F F     ST          N   +
Sbjct: 9   SVFGMGNSNTNFNFAGSNNQPHTSNTPSTPFTF-GASPSTPANAASPSGSNPPAF 62


>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter.  This model represents
           the phosphate uptake symporter subfamily of the major
           facilitator superfamily (pfam00083).
          Length = 502

 Score = 30.9 bits (70), Expect = 0.68
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 49  IGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT------INSFTGMLCMRLIQG 102
           IG    Q+F+G L+D+ GRK V    L+I II+T            +    +   R   G
Sbjct: 67  IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLG 126

Query: 103 IGG 105
           +G 
Sbjct: 127 VGI 129


>gnl|CDD|181510 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
           acyltransferase; Validated.
          Length = 1146

 Score = 29.5 bits (67), Expect = 1.7
 Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 4   VIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSD 63
           +I ++    I+ L             + L L N    Q+L++   IG GI  +  G LS 
Sbjct: 238 IIGLSYFWFISQL---AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLS- 293

Query: 64  RFGRKIVMMFGLV----IHI-ISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRD 118
             GR I    GLV    + + +S F++ T  S   +L +  + G       +   ++I+ 
Sbjct: 294 --GRHI--ELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQF 349

Query: 119 IYDGRDMAKVLS-------IAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFI 171
               +++ KVL+       + M++F+ +  L   +G +         G+F  + ++T   
Sbjct: 350 RAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPA-------GLFYLIALVTLIG 402

Query: 172 TLWYYIRFPETL 183
           TL+  +  P++L
Sbjct: 403 TLYTLLLLPDSL 414


>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional.
          Length = 471

 Score = 29.3 bits (66), Expect = 2.0
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 24/129 (18%)

Query: 59  GPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGA----APRIITIS 114
           G L+DR G + +    +V+  + +       +   +L  R++QG+GGA      R+  + 
Sbjct: 66  GWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMK 125

Query: 115 II-RDIYDGRDMAKVLSIAMMIFM-----IMPILAPSIGQATVALSGGWIGIFVC---MG 165
           I+ R+ Y          +A M F+     + P+L P++G   V  +  W  IF+    +G
Sbjct: 126 IVPREQY----------MAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWIFLINIPVG 174

Query: 166 VITTFITLW 174
           +I    TL 
Sbjct: 175 IIGAIATLM 183


>gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; Reviewed.
          Length = 453

 Score = 29.2 bits (66), Expect = 2.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 212 YNIANSLTMGAILGFVNSS-QQIYVGIYQL----GNLFPIAFAVG 251
           +NIAN+L   A+   V ++   +  G+  L    G LFPI  A G
Sbjct: 282 HNIANALAAAALAMSVGATLDAVKAGLANLKAVPGRLFPIQLAEG 326


>gnl|CDD|162094 TIGR00893, 2A0114, d-galactonate transporter. 
          Length = 399

 Score = 28.8 bits (65), Expect = 2.8
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 4/147 (2%)

Query: 26  PKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM 85
           P + + L LS   YG ++ S +  GY + Q   G L DRFG +  +   +VI  + T + 
Sbjct: 18  PMLQEDLGLSAAQYG-YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ 76

Query: 86  VTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAM-MIFMIMPILAP 144
               ++  +  +R++ G   A      I I+   +   + A  +SI      +   I  P
Sbjct: 77  AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGP 136

Query: 145 SIGQATVALSGGWIGIFVCMGVITTFI 171
            +G   +  S  W   F+  GV+    
Sbjct: 137 LVGWILIHFS--WQWAFIIEGVLGIIW 161


>gnl|CDD|162091 TIGR00890, 2A0111, Oxalate/Formate Antiporter. 
          Length = 377

 Score = 27.8 bits (62), Expect = 4.5
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 47  YLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGA 106
            LIG  ++    G L+D+FG + V M G +++ +        +S   +    L  G+  A
Sbjct: 47  LLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALY---LTYGLASA 103

Query: 107 APRIITISII 116
              I     +
Sbjct: 104 GVGIAYGIAL 113



 Score = 27.4 bits (61), Expect = 6.6
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 13/131 (9%)

Query: 39  YGQHLI----------SFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTI 88
           YGQ L           S   I  G  + F G LSD+ GR+  M     I  +    M+ I
Sbjct: 231 YGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI 290

Query: 89  NSFTGMLCMRLIQGIGGAAPRIITI--SIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSI 146
                +L +  +  +       I++  S++ DI+   + A           +  I    +
Sbjct: 291 PMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFG-GL 349

Query: 147 GQATVALSGGW 157
             +      G+
Sbjct: 350 IASHALTEIGF 360


>gnl|CDD|180708 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
           Provisional.
          Length = 1140

 Score = 26.9 bits (60), Expect = 9.1
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 334 LAGTASSIFGFINTVISTILGIIIGQSFNGT----TYPITIGFFGIAVSSFIC 382
           LA    S F  +  V+ + L ++  ++  G     T  + +   G+AV SF+ 
Sbjct: 229 LAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLA 281


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.333    0.146    0.437 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,596,795
Number of extensions: 452344
Number of successful extensions: 1696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1616
Number of HSP's successfully gapped: 212
Length of query: 398
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 303
Effective length of database: 3,941,713
Effective search space: 1194339039
Effective search space used: 1194339039
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.1 bits)