RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780967|ref|YP_003065380.1| probable multidrug resistance transporter protein [Candidatus Liberibacter asiaticus str. psy62] (398 letters) >gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional. Length = 377 Score = 168 bits (429), Expect = 2e-42 Identities = 97/387 (25%), Positives = 191/387 (49%), Gaps = 17/387 (4%) Query: 9 MLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRK 68 MLM L ID+ LP LP I+ +S + Q +S Y++G+ I Q+FYGP++D FGRK Sbjct: 1 MLM---PLAIDMYLPALPVIAADFGVSAGSV-QMTLSAYILGFAIGQLFYGPMADSFGRK 56 Query: 69 IVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKV 128 V++ G ++ ++ + ++ MR + G+ AA ++ +++RD++ + +++ Sbjct: 57 PVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRM 116 Query: 129 LSIAMMIFMIMPILAPSIGQATVALSGGWIGIF---VCMGVITTFITLWYYIRFPETLDP 185 +S ++ I P+LAP IG + + W IF ++ + + PETL Sbjct: 117 MSFVTLVMTIAPLLAPIIGGW-LLVWFSWHAIFWVLALAAILAAALVFF---FIPETLPK 172 Query: 186 RDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLG-NLF 244 +P +L + +F+ +F+H+ Y +A+ + + F+ + +Y+ + + F Sbjct: 173 ERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNF 232 Query: 245 PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWL-LVQITSNHPIHLL 303 FA+ + + + INSR V + G + + L I F I G WL + + L+ Sbjct: 233 GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQF-IMGIWLVVSALLDLGFWALV 291 Query: 304 IFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNG 363 + +A F +I+SN ++ ++ F H+AGTASS+ G + I I+G ++ + Sbjct: 292 VGVAAFV---GCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLAPFT 348 Query: 364 TTYPITIGFFGIAVSSFICILIVEKNQ 390 + +P+ ++ S + L + + Sbjct: 349 SAWPMVWSMAFCSILSILFYLYASRPK 375 >gnl|CDD|162006 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385 Score = 166 bits (423), Expect = 7e-42 Identities = 99/380 (26%), Positives = 191/380 (50%), Gaps = 7/380 (1%) Query: 3 FVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLS 62 F +++ L + LGID+ LP P+I+ L Q ++ YL+G+ Q+ +GPLS Sbjct: 6 FALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV-QMTLTLYLLGFAAGQLLWGPLS 64 Query: 63 DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDG 122 DR+GR+ V++ GL I +S+ + N+ +L +R +Q G +A +I+ +++RDIY G Sbjct: 65 DRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPG 124 Query: 123 RDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPET 182 +++++ SI M + + P +AP +G + + W IF + + ++ + PET Sbjct: 125 EELSRIYSILMPVLALAPAVAPLLG-GYILVWLSWHAIFAFLSLAGILLSALIFFILPET 183 Query: 183 LDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN 242 L ++ Y +F L+ K + Y + + G F + + +Y+ I + Sbjct: 184 LPYEARIQISTYF--ETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSP 241 Query: 243 L-FPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIH 301 F + FA+ AM F+N R ++K+G + + L++F ++ L + Sbjct: 242 SVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFA-VSAVLLEITAILGLGSW 300 Query: 302 LLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSF 361 +I F+ +I+S + ++E F H+AGTAS++FG + V+ I+G ++ Sbjct: 301 AMIIGPMMFVG-IGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIH 359 Query: 362 NGTTYPITIGFFGIAVSSFI 381 T +P+++ +AV S + Sbjct: 360 GNTAWPMSLSCLVLAVVSVL 379 >gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional. Length = 394 Score = 114 bits (287), Expect = 6e-26 Identities = 93/356 (26%), Positives = 170/356 (47%), Gaps = 39/356 (10%) Query: 3 FVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLS 62 + ++ +L+A+ + I +P + ++ L++ E Q +++ YL+ YG++Q+FYGPLS Sbjct: 9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVR-EGAVQAVMAAYLLTYGLSQLFYGPLS 67 Query: 63 DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDG 122 DR GR+ V++ G+ I I+ T + + +S T ++ IQG+G ++ ++ RD+Y+G Sbjct: 68 DRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG 127 Query: 123 RDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPET 182 + S+ M ++ P+LAP IG L GW ++ + ++ +T PET Sbjct: 128 TQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGAGVTFSMARWMPET 186 Query: 183 LDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN 242 P D R + L S+ + +R Y + T+ I F S + + L + Sbjct: 187 R-PADARRTRV---LASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSS 242 Query: 243 -----LF----PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLL------IFFMITG 287 LF P AF FA R ++F + S++ + I G Sbjct: 243 MTVSILFILPIPAAFFGAWFA--------GRPNKRF--STLMWQSVICCLLAGLLMWIPG 292 Query: 288 SWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFG 343 + ++ + + LL+ A FF + G++ +S +MEPF +LAGTA ++ G Sbjct: 293 WFGVMNVWT-----LLVPAALFFFGA---GMLFPLATSGAMEPFPYLAGTAGALLG 340 >gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional. Length = 392 Score = 89.3 bits (222), Expect = 2e-18 Identities = 97/350 (27%), Positives = 148/350 (42%), Gaps = 55/350 (15%) Query: 16 LGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGL 75 GID+ L LP+I+ L+ S E S YL G A +F G ++DR GRK V + G Sbjct: 17 AGIDMYLVGLPRIAADLNAS-EAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGA 75 Query: 76 VIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMI 135 + II++ + + + L R +QGIG ++ +I+RD D R AKVLS+ I Sbjct: 76 ALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGI 135 Query: 136 FMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYA 195 I+P+LAP +G + L W +F M + + L ET R + Sbjct: 136 TCIIPVLAPVLGH-LIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAASSK-P 193 Query: 196 ILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAM 255 +S SL+ + S L + +L++ IL FVN+S + + Q+G F+ G +A+ Sbjct: 194 RENSESLLNRFFLSRL--VITTLSVTVILTFVNTSPVLLME--QMG------FSRGEYAI 243 Query: 256 SIA---------SFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFI 306 +A SF + F R + S ++F L Sbjct: 244 IMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF--------------------LAAG 283 Query: 307 AFFFLASFQ------FGLINSNFS-------SISMEPFSHLAGTASSIFG 343 L+ LI + FS S ++ PFS AG ASS G Sbjct: 284 ITLALSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLG 333 >gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional. Length = 401 Score = 84.9 bits (211), Expect = 3e-17 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 2/166 (1%) Query: 3 FVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLS 62 F++ +A L + L D+ LP I L S L S +L G+ + Q+ +GPLS Sbjct: 7 FLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASL-SLFLAGFALGQLLWGPLS 65 Query: 63 DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDG 122 DR+GRK V++ GL + + + M+ + S +L +R +Q +G + +I +++ D Y Sbjct: 66 DRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA 125 Query: 123 RDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVIT 168 + +V + M + + P LAP +G A + GW IF + IT Sbjct: 126 QKANRVFATIMPLVALSPALAPLLG-AWLLNHFGWQAIFATLFAIT 170 >gnl|CDD|148990 pfam07690, MFS_1, Major Facilitator Superfamily. Length = 345 Score = 84.0 bits (208), Expect = 6e-17 Identities = 73/348 (20%), Positives = 147/348 (42%), Gaps = 7/348 (2%) Query: 7 IAMLMAINSLGIDIILPCLPK-ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRF 65 + + + LG ++ P LP +++ L +S G L++ + +GY +AQ G LSDRF Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIG-LLLTAFSLGYALAQPLAGRLSDRF 59 Query: 66 GRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDM 125 GR+ V++ GL++ + +++ +S +L +R++QG+GG A ++I D + + Sbjct: 60 GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119 Query: 126 AKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLDP 185 + L + F + L P +G +A GW F+ + ++ + + P Sbjct: 120 GRALGLLSAGFGLGAALGPLLG-GLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPE 178 Query: 186 RDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNL-F 244 A R L+ + L G + + +Y + L L Sbjct: 179 SKRPKPAEEAPAPLVPWKLLLRDPVLWLLLALLLFGFAFFALFTYLPLYQEVLGLSALLA 238 Query: 245 PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLI 304 + + G +I + RL ++ G RR +LL+ + L+ +T + L+ Sbjct: 239 GLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 298 Query: 305 FIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTI 352 + F A F +N+ S ++ + GTAS ++ ++ + Sbjct: 299 LLLLGFGAGLVFPALNALASDLAPK---EERGTASGLYNTAGSLGGAL 343 >gnl|CDD|162085 TIGR00880, 2_A_01_02, Multidrug resistance protein. Length = 141 Score = 76.9 bits (190), Expect = 9e-15 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 5/142 (3%) Query: 45 SFYLIGYGIAQIFYGPLS----DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLI 100 L GY + Q+ Y PLS DRFGRK V++ GL I ++ST + ++ T ++ R + Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60 Query: 101 QGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGI 160 QG G A + ++I DIY + L + + P+L P +G +A GW Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG-GVLAQFLGWRAP 119 Query: 161 FVCMGVITTFITLWYYIRFPET 182 F+ + ++ + PET Sbjct: 120 FLFLAILALAAFILLAFLLPET 141 >gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA; Provisional. Length = 406 Score = 71.1 bits (175), Expect = 5e-13 Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 7/194 (3%) Query: 16 LGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGL 75 + D+I P + + + + E + ++ YL G Q GPLSDR GR+ VM+ G+ Sbjct: 27 IANDMIQPGMLAVVEDFNAGAE-WVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV 85 Query: 76 VIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMI 135 I++ ++ S +R +QGIG + + I++ ++ D K+ ++ + Sbjct: 86 AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANV 145 Query: 136 FMIMPILAPSIGQATVALSGGWIGIFVCMGVIT--TFITLWYYIRFPETLDPRDVRPLNL 193 ++ P+L P +G A + + W G+FV + +F LW + PET L+L Sbjct: 146 ALLAPLLGPLVGAALIHV-LPWRGMFVLFAALAALSFFGLWRAM--PETAGRVG-EKLSL 201 Query: 194 YAILHSFSLIFKHR 207 + + L+ K+R Sbjct: 202 KELGRDYKLVLKNR 215 >gnl|CDD|185301 PRK15403, PRK15403, multidrug efflux system protein MdtM; Provisional. Length = 413 Score = 58.3 bits (141), Expect = 4e-09 Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 9/228 (3%) Query: 44 ISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI 103 +S YL G Q GPLSDR GR+ V++ G +I ++ + S T L R IQG Sbjct: 57 VSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGT 116 Query: 104 GGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVC 163 + +++ + K+++I I ++ PI+ P G A + W +F Sbjct: 117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-HWKVLFAI 175 Query: 164 MGVITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAI 223 + V+ + + PET+ R P + ++L F +F++R SL+ + Sbjct: 176 IAVMGLIAFVGLLLAMPETVK-RGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPM 234 Query: 224 LGFVNSSQQIYVGIYQLGNLFPIAFA---VGGF-AMSIASFINSRLVE 267 + +V S I + G + FA V F A+ +A+ I +R V+ Sbjct: 235 MSWVAVSPVILI---DAGGMTTSQFAWTQVPVFGAVIVANAIVARFVK 279 >gnl|CDD|162090 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator). Length = 366 Score = 54.7 bits (132), Expect = 4e-08 Identities = 71/338 (21%), Positives = 127/338 (37%), Gaps = 28/338 (8%) Query: 28 ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT 87 I D L LS G L++ ++ + +I G L D+FG + L++ I Sbjct: 28 IKDDLGLSTAQLGN-LVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86 Query: 88 IN-SFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIA--------MMIFMI 138 S++ +L +RL GI G + + I + + L +A + + Sbjct: 87 AVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFV 145 Query: 139 MPILAPSIGQAT---VALSGGWIGIFVCMGVI--TTFITLWYYIRFP------ETLDPRD 187 MP + S+ L+ GW + V G++ + + P L + Sbjct: 146 MPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKG 205 Query: 188 VRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIA 247 R L +F+ R + + + S+T G+ LG + + + L + A Sbjct: 206 ARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGA 265 Query: 248 FA-VGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFI 306 +A +GG S+A + + ++ G R L+ F + LV + P+ L +FI Sbjct: 266 YASLGGLLGSLARPLGGAISDRLGGARK---LLMSFLGVAMGAFLVVLGLVSPLSLAVFI 322 Query: 307 AFFFLASFQFGLIN-SNFSSISMEPFSHLAGTASSIFG 343 F F G N S F+ + F G S + G Sbjct: 323 VLFVALFFFSGAGNGSTFALVPHI-FRRATGAVSGLVG 359 >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. Length = 485 Score = 48.1 bits (115), Expect = 4e-06 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 11/178 (6%) Query: 1 MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60 + V+++ MA+ L I+ +P I+ L S Q +I+ Y++ I+ G Sbjct: 3 LTIVLMLGTFMAV--LDSTIVNVAIPTIAGDLGSSLSQ-VQWVITSYMLANAISIPLTGW 59 Query: 61 LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIY 120 L+ RFG + + + + + + + M+ R+IQG GG ++ S + +IY Sbjct: 60 LAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY 119 Query: 121 DGRDMAKVLSIAMMIFMIMPILAPSI-GQATVALSGGW-------IGIFVCMGVITTF 170 + ++I + ++ P L P++ G W IGI V + Sbjct: 120 PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFIL 177 >gnl|CDD|162095 TIGR00895, 2A0115, benzoate transport. Length = 398 Score = 46.6 bits (111), Expect = 1e-05 Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 2/181 (1%) Query: 4 VIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSD 63 +I+ ++M ++ + + P IS L G L S LIG +F+GPL+D Sbjct: 19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLG-FLFSAGLIGMAFGALFFGPLAD 77 Query: 64 RFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGR 123 R GRK V+++ +++ + T + + T +L +R + G+G +++ + R Sbjct: 78 RIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR 137 Query: 124 DMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETL 183 + + + I + + + + GW +F G+ + L PE++ Sbjct: 138 FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWRSLFYVGGIAPLLLLLLLMRFLPESI 196 Query: 184 D 184 D Sbjct: 197 D 197 Score = 32.3 bits (74), Expect = 0.23 Identities = 14/51 (27%), Positives = 26/51 (50%) Query: 53 IAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI 103 I I +G L+DR G ++ + L+ + + + T+ S T +L + I G Sbjct: 300 IGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGF 350 >gnl|CDD|162086 TIGR00881, 2A0104, phosphoglycerate transporter family protein. Length = 379 Score = 44.3 bits (105), Expect = 6e-05 Identities = 62/360 (17%), Positives = 120/360 (33%), Gaps = 36/360 (10%) Query: 25 LPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI 84 +P + + + LS + G L SF I YGI++ G +SDR ++ + GL++ I Sbjct: 18 MPYLVEEIGLSKTDLGLLLSSFS-IAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76 Query: 85 MVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAP 144 S M + + GI + + + +S + L P Sbjct: 77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136 Query: 145 SIGQATVALSGGWIGIFV---CMGVITTFITLWYY--------------IRFPETLDPRD 187 + +A W +F+ + +I + I + E + Sbjct: 137 PLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAE 196 Query: 188 VRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYV----GIYQL-GN 242 + L + ++ ++ G ++ S +Y+ G + + Sbjct: 197 KKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWS-PLYLTQEKGFSKEKAS 255 Query: 243 LFPIAFAVGGFAMSIASFINSRLVEKFGIRRVS---HYSLLIFFMITGSWLLVQITSNHP 299 + +GG ++ + S + F RR + LI + WL +N Sbjct: 256 WAFTLYELGGLVGTLLAGWLSDKL--FNGRRGPLAVFFMALIIVSLLVYWLNP--AANPL 311 Query: 300 IHLLIFIAFFFLASFQFGLINSNFSSISME-PFSHLAGTASSIFGFINTVISTILGIIIG 358 + L I F L +G I+ E AGTA+ GF + + G+ +G Sbjct: 312 MDL---ICLFALGFLVYGPQML-IGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG 367 >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 Score = 43.4 bits (102), Expect = 1e-04 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 5/148 (3%) Query: 6 VIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRF 65 V+ + + + + + ++ LP L + + G L +G + F+G L+D+ Sbjct: 171 VLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGM-LGLIVYLGMMVGAFFWGGLADKL 229 Query: 66 GRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQ--GIGGAAPRIITISIIRDIYDGR 123 GRK ++ L ++ F + + L RL+ GIGGA P I S + Sbjct: 230 GRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIP--IVFSYFAEFLAQE 287 Query: 124 DMAKVLSIAMMIFMIMPILAPSIGQATV 151 + LS M +MI I A ++ A + Sbjct: 288 KRGEHLSWLCMFWMIGGIYAAAMAWAII 315 >gnl|CDD|162097 TIGR00898, 2A0119, cation transport protein. Length = 505 Score = 42.7 bits (101), Expect = 2e-04 Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 5/138 (3%) Query: 44 ISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI 103 S + +G + +G LSDRFGRK V++ ++ +S + ++T L RL+ G+ Sbjct: 133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGM 192 Query: 104 GGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVC 163 G + + + + + A V ++ + F + +L P + W + + Sbjct: 193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLA 248 Query: 164 MGVITTFITLWYYIRFPE 181 + + TF+ PE Sbjct: 249 VSL-PTFLFFLLSWFVPE 265 >gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional. Length = 476 Score = 41.5 bits (98), Expect = 4e-04 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 23 PCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIIST 82 P LP I D+L+L+ + G I + G +++ GP+ D +G + F L++ + Sbjct: 57 PLLPIIRDNLNLTKSDIGNAGI-ASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAV 115 Query: 83 FIMVTINSFTGMLCMRLIQGIGGAA 107 F M ++S TG + +R G A Sbjct: 116 FCMSLVSSATGFIAVRFFIGFSLAT 140 >gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster.It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes. Length = 598 Score = 41.2 bits (96), Expect = 5e-04 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 6/136 (4%) Query: 45 SFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIG 104 + + +G ++ + G L+DRFGR+ ++ +I ++ + T N F +L + G+ Sbjct: 85 TLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLAAMTLLGV- 143 Query: 105 GAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIF--- 161 A P + I ++ + L I + M P GQ +A+ G W IF Sbjct: 144 AAGPAGASPLFIGELMSNKTKFLGLLIVSAPTIAMNGAGPYFGQ-RLAIQGNWRWIFYIY 202 Query: 162 -VCMGVITTFITLWYY 176 + + I +WY+ Sbjct: 203 IIMSAIAVLLIIIWYH 218 >gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. Length = 365 Score = 38.1 bits (89), Expect = 0.004 Identities = 47/288 (16%), Positives = 96/288 (33%), Gaps = 25/288 (8%) Query: 47 YLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTG-----MLCMRLIQ 101 ++ Y + G L+DR+ RK VM+ +I + ++ + G + + I Sbjct: 43 GMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGIL 102 Query: 102 GIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIF 161 I A +++ D+ + + S++ + + I+ P IG A G I+ Sbjct: 103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 Query: 162 VCMGVITTFITLWYYIRFPE-TLDPRDVRPLNLYA-ILHSFSLIFKHR-------ASTLY 212 V L +R PE + + K+ + L+ Sbjct: 163 VDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLF 222 Query: 213 NIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAMSIASFINSRLVEKFGIR 272 N+ + + A+ +V Q Y+G + A G + + + + G Sbjct: 223 NLVFAPAIVALFPYV---QSKYLGRGST--HYGWVLAAFGLGALLGALL----LGLLGRY 273 Query: 273 RVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLIN 320 + + G +LV + L + + F +G IN Sbjct: 274 FKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFA--IGVGYGPIN 319 >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional. Length = 496 Score = 35.8 bits (83), Expect = 0.020 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 3/160 (1%) Query: 25 LPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI 84 L ++ L+ LIS I + G + DR+GR++ M+ +V+ + T Sbjct: 43 LTEVQGEFGLTTVQ-AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLA 101 Query: 85 MVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAP 144 + + RL+ G+G A + + + + + K + F I ++A Sbjct: 102 CGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAA 161 Query: 145 SIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLD 184 + + V GW +F +G++ LW PE D Sbjct: 162 QV-YSLVVPVWGWRALFF-IGILPIIFALWLRKNLPEAED 199 >gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter; Provisional. Length = 490 Score = 35.8 bits (83), Expect = 0.020 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 8/80 (10%) Query: 28 ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRK---IVMMFGLVIHIISTFI 84 +S +LH S E++G +I +IG Q G LSDRFGR+ I+ L + I FI Sbjct: 277 LSHNLHYS-EDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFI 335 Query: 85 MVTINS----FTGMLCMRLI 100 ++ N F G+L + +I Sbjct: 336 LINSNVIGLIFAGLLMLAVI 355 Score = 30.4 bits (69), Expect = 0.83 Identities = 14/36 (38%), Positives = 24/36 (66%) Query: 56 IFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSF 91 +F+G L D++GR+ ++ +VI ISTF + I S+ Sbjct: 75 LFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSY 110 >gnl|CDD|162092 TIGR00891, 2A0112, putative sialic acid transporter. Length = 405 Score = 34.9 bits (80), Expect = 0.043 Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 43 LISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQG 102 LIS LI + +G DR+GR++ M+ +V+ T + M RL+ G Sbjct: 52 LISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIG 111 Query: 103 IG 104 IG Sbjct: 112 IG 113 Score = 28.7 bits (64), Expect = 2.7 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 11/118 (9%) Query: 3 FVIVIAMLMAIN--SLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60 FV ++ +++ N S I +LP K L + + +++ F IG + +G Sbjct: 240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGL---SPHTVANIVVFSNIGAIVGGCVFGF 296 Query: 61 LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCM------RLIQGIGGAAPRIIT 112 L D GR+ + L+ + + I + +L + L+QGI G P+ + Sbjct: 297 LGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLG 354 >gnl|CDD|162040 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. Length = 437 Score = 33.8 bits (78), Expect = 0.078 Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 9/166 (5%) Query: 156 GWIGIFVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIA 215 + + +GV++ I + E ++ F +FK+ + +A Sbjct: 174 MFALVLALIGVVSLIIC---FFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLA 230 Query: 216 NSLTMGAILGFVNSSQQIYVGIYQLG--NLFPIAFAVGGFAMSIASFINSRLVEKFGIRR 273 A + + Q+Y Y LG LF ++ A I + RLV+KFG + Sbjct: 231 YLFYNLAF--NIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI 288 Query: 274 VSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLI 319 + +L+ M+ G + SN P+ L++ I F +F GL+ Sbjct: 289 LFAGGILL--MVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLV 332 >gnl|CDD|183191 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional. Length = 406 Score = 33.0 bits (76), Expect = 0.12 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Query: 56 IFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI--GGAAPRIITI 113 + G L+DR GRK +++ + + + + F +L RL+ G+ GGA P +I + Sbjct: 68 LLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIAL 127 Query: 114 S 114 + Sbjct: 128 T 128 >gnl|CDD|179633 PRK03699, PRK03699, putative transporter; Provisional. Length = 394 Score = 33.0 bits (76), Expect = 0.14 Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 11/145 (7%) Query: 28 ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT 87 I++ +L + +F G I+ L + K ++FG + I++ ++ Sbjct: 33 IAEYFNLPVSSMSN-TFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF 91 Query: 88 INS-FTGMLCMRLIQGIGGAAPRIITISI----IRDIYDGRDMAKVLSIAMMIFMIMPIL 142 +S + M ++ + G IT+SI I +Y+G+ L F + ++ Sbjct: 92 SHSLALFSIAMFVLGVVSG-----ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI 146 Query: 143 APSIGQATVALSGGWIGIFVCMGVI 167 P I +A S W ++ C+G++ Sbjct: 147 FPIIAAYLLARSIEWYWVYACIGLV 171 >gnl|CDD|183424 PRK12307, PRK12307, putative sialic acid transporter; Provisional. Length = 426 Score = 33.0 bits (75), Expect = 0.15 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 2/135 (1%) Query: 48 LIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAA 107 IG +G L+D+FGRK +MM+ +V + + T + + + R I G+G A Sbjct: 63 FIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAG 122 Query: 108 PRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVI 167 + + + +K + + F I I+A + A + GW F +G++ Sbjct: 123 EYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF-MPSFAEAYGWRAAFF-VGLL 180 Query: 168 TTFITLWYYIRFPET 182 + ++ R PE+ Sbjct: 181 PVLLVIYIRARAPES 195 >gnl|CDD|162087 TIGR00883, 2A0106, metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. Length = 394 Score = 32.6 bits (75), Expect = 0.16 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 17/135 (12%) Query: 48 LIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTF----IMVTINSFTGMLCMRLIQGI 103 LI + I G LSDR GR+ V++ V+ + ++ SFT + L + Sbjct: 265 LILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLAL 324 Query: 104 GGAAPRIITISIIRDI------YDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGW 157 G S + ++ Y G +A L+ A I AP I A VA++G W Sbjct: 325 IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGA-----IFGGFAPYIAAALVAMTGDW 379 Query: 158 --IGIFVCMGVITTF 170 IG ++ + Sbjct: 380 YAIGYYLAALALIGL 394 Score = 29.5 bits (67), Expect = 1.5 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%) Query: 56 IFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTG--------MLCMRLIQGIG 104 I +G DR GRK ++ L++ I T ++ + S+ +L RLIQG Sbjct: 53 IVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109 >gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional. Length = 382 Score = 32.8 bits (75), Expect = 0.18 Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 20 IILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHI 79 I+ L +++ + +S G H+IS+Y +G + S R+ K +++F + + + Sbjct: 21 GIMGVLTELAHDVGISIPAAG-HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCV 79 Query: 80 ISTFIMVTINSFTGMLCMRLIQG 102 I + +S+ + RL+ G Sbjct: 80 IGNAMFTLSSSYLMLAIGRLVSG 102 >gnl|CDD|147889 pfam05977, DUF894, Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins. Length = 524 Score = 32.3 bits (74), Expect = 0.20 Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 29/235 (12%) Query: 56 IFYGPLSDRFGRKIVMMFG-LVIHIISTFIMVTINSFTGM------LCMRLIQGIGGAAP 108 I G ++D F R+ VM+ G L++ I S + V + G+ L + GIG A Sbjct: 63 IPAGAIADNFDRRKVMLAGQLLMAIASALLTVL--AALGLLSPWLLLAFTFLIGIGTALN 120 Query: 109 RIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVIT 168 + + D+ RD+ +++ + + + + P++G VA G V ++ Sbjct: 121 DPAWQASVGDLVPRRDVPAAVALNSVGYNLARSVGPALGGLLVAAFGAATAFAV--NALS 178 Query: 169 TFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVN 228 F + R+ + P + NL+ L + L + S I + L A G Sbjct: 179 YFAVIVAIARWKRDVPPSPLPRENLFGALRA-GLRYT-AMSR--EIRSVLVRAAAFGLSA 234 Query: 229 SS----------QQIYVGIYQLGNLFPIAFAVGGFAMSIASFINSRLVEKFGIRR 273 S+ + G L AF G + I SRL + R Sbjct: 235 SAVWALLPLVARDLLGGDAGFYGILLG-AFGAGAVL---GALILSRLRRRLSSER 285 >gnl|CDD|163048 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs. Length = 764 Score = 31.2 bits (71), Expect = 0.47 Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 196 ILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAM 255 I L+ + + A + +G ILG N++ +G++ L F G Sbjct: 181 IARLAVLLISYIGGSGAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIG 240 Query: 256 SIASFINSRLVEKF 269 + ++ L+ F Sbjct: 241 TGIGYLVGFLILAF 254 Score = 31.2 bits (71), Expect = 0.53 Identities = 29/148 (19%), Positives = 45/148 (30%), Gaps = 25/148 (16%) Query: 246 IAFAVGGFAMSIASFINSRLVEKFGI------RRVSHYSLLIFFMITGSWL-LVQITSNH 298 I F V F + A ++ + FGI FF G L + I H Sbjct: 1 IIFFVIAFLLGRAVIVSP--MAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISIQPKH 58 Query: 299 PIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIG 358 + L+ +A L S+ N ++ P I F+ + I G Sbjct: 59 SLKYLLLVAVIILLSYVLK--NLTDKKKTVVPP---------IVVFLEAAVYAIFGY--- 104 Query: 359 QSFNGTTYPITIGFFGIAVSSFICILIV 386 N P+ I +S +L Sbjct: 105 -LQNKLVTPLDF-ILSIVEASLSFVLYY 130 >gnl|CDD|162084 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083). Length = 481 Score = 31.2 bits (71), Expect = 0.52 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%) Query: 44 ISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM--VTINSFTGMLCM-RLI 100 +S +L+G I +F G LSDRFGRK ++ ++ +I +M ML + R++ Sbjct: 77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVL 136 Query: 101 QGIG 104 GIG Sbjct: 137 LGIG 140 >gnl|CDD|151127 pfam10599, Nup_retrotrp_bd, Retro-transposon transporting motif. This is the highly conserved C-terminal motif GRKIxxxxxRRKx of nucleoporins that plays a critical and unique role in the nuclear import of retro-transposons in both yeasts and higher organisms. It would appear that the arginine residues at positions 2 and 9-10 constitute a bipartite nuclear localisation signal, with two basic peptide motifs separated by an interchangeable spacer sequence, that is crucial for the retro-transposon activity. Length = 101 Score = 30.9 bits (69), Expect = 0.56 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 1/55 (1%) Query: 312 ASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTY 366 + F G N+NF+ H + T S+ F F ST N + Sbjct: 9 SVFGMGNSNTNFNFAGSNNQPHTSNTPSTPFTF-GASPSTPANAASPSGSNPPAF 62 >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). Length = 502 Score = 30.9 bits (70), Expect = 0.68 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 49 IGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT------INSFTGMLCMRLIQG 102 IG Q+F+G L+D+ GRK V L+I II+T + + R G Sbjct: 67 IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLG 126 Query: 103 IGG 105 +G Sbjct: 127 VGI 129 >gnl|CDD|181510 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated. Length = 1146 Score = 29.5 bits (67), Expect = 1.7 Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 4 VIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSD 63 +I ++ I+ L + L L N Q+L++ IG GI + G LS Sbjct: 238 IIGLSYFWFISQL---AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLS- 293 Query: 64 RFGRKIVMMFGLV----IHI-ISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRD 118 GR I GLV + + +S F++ T S +L + + G + ++I+ Sbjct: 294 --GRHI--ELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQF 349 Query: 119 IYDGRDMAKVLS-------IAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFI 171 +++ KVL+ + M++F+ + L +G + G+F + ++T Sbjct: 350 RAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPA-------GLFYLIALVTLIG 402 Query: 172 TLWYYIRFPETL 183 TL+ + P++L Sbjct: 403 TLYTLLLLPDSL 414 >gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional. Length = 471 Score = 29.3 bits (66), Expect = 2.0 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 24/129 (18%) Query: 59 GPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGA----APRIITIS 114 G L+DR G + + +V+ + + + +L R++QG+GGA R+ + Sbjct: 66 GWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMK 125 Query: 115 II-RDIYDGRDMAKVLSIAMMIFM-----IMPILAPSIGQATVALSGGWIGIFVC---MG 165 I+ R+ Y +A M F+ + P+L P++G V + W IF+ +G Sbjct: 126 IVPREQY----------MAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWIFLINIPVG 174 Query: 166 VITTFITLW 174 +I TL Sbjct: 175 IIGAIATLM 183 >gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed. Length = 453 Score = 29.2 bits (66), Expect = 2.1 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Query: 212 YNIANSLTMGAILGFVNSS-QQIYVGIYQL----GNLFPIAFAVG 251 +NIAN+L A+ V ++ + G+ L G LFPI A G Sbjct: 282 HNIANALAAAALAMSVGATLDAVKAGLANLKAVPGRLFPIQLAEG 326 >gnl|CDD|162094 TIGR00893, 2A0114, d-galactonate transporter. Length = 399 Score = 28.8 bits (65), Expect = 2.8 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 4/147 (2%) Query: 26 PKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM 85 P + + L LS YG ++ S + GY + Q G L DRFG + + +VI + T + Sbjct: 18 PMLQEDLGLSAAQYG-YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ 76 Query: 86 VTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAM-MIFMIMPILAP 144 ++ + +R++ G A I I+ + + A +SI + I P Sbjct: 77 AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGP 136 Query: 145 SIGQATVALSGGWIGIFVCMGVITTFI 171 +G + S W F+ GV+ Sbjct: 137 LVGWILIHFS--WQWAFIIEGVLGIIW 161 >gnl|CDD|162091 TIGR00890, 2A0111, Oxalate/Formate Antiporter. Length = 377 Score = 27.8 bits (62), Expect = 4.5 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 47 YLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGA 106 LIG ++ G L+D+FG + V M G +++ + +S + L G+ A Sbjct: 47 LLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALY---LTYGLASA 103 Query: 107 APRIITISII 116 I + Sbjct: 104 GVGIAYGIAL 113 Score = 27.4 bits (61), Expect = 6.6 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 13/131 (9%) Query: 39 YGQHLI----------SFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTI 88 YGQ L S I G + F G LSD+ GR+ M I + M+ I Sbjct: 231 YGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI 290 Query: 89 NSFTGMLCMRLIQGIGGAAPRIITI--SIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSI 146 +L + + + I++ S++ DI+ + A + I + Sbjct: 291 PMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFG-GL 349 Query: 147 GQATVALSGGW 157 + G+ Sbjct: 350 IASHALTEIGF 360 >gnl|CDD|180708 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional. Length = 1140 Score = 26.9 bits (60), Expect = 9.1 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 334 LAGTASSIFGFINTVISTILGIIIGQSFNGT----TYPITIGFFGIAVSSFIC 382 LA S F + V+ + L ++ ++ G T + + G+AV SF+ Sbjct: 229 LAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLA 281 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.333 0.146 0.437 Gapped Lambda K H 0.267 0.0753 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,596,795 Number of extensions: 452344 Number of successful extensions: 1696 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1616 Number of HSP's successfully gapped: 212 Length of query: 398 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 303 Effective length of database: 3,941,713 Effective search space: 1194339039 Effective search space used: 1194339039 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 58 (26.1 bits)