BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780967|ref|YP_003065380.1| probable multidrug resistance
transporter protein [Candidatus Liberibacter asiaticus str. psy62]
         (398 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780967|ref|YP_003065380.1| probable multidrug resistance transporter protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 398

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/398 (100%), Positives = 398/398 (100%)

Query: 1   MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60
           MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP
Sbjct: 1   MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60

Query: 61  LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIY 120
           LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIY
Sbjct: 61  LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIY 120

Query: 121 DGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFP 180
           DGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFP
Sbjct: 121 DGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFP 180

Query: 181 ETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQL 240
           ETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQL
Sbjct: 181 ETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQL 240

Query: 241 GNLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPI 300
           GNLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPI
Sbjct: 241 GNLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPI 300

Query: 301 HLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQS 360
           HLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQS
Sbjct: 301 HLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQS 360

Query: 361 FNGTTYPITIGFFGIAVSSFICILIVEKNQMFRKTELR 398
           FNGTTYPITIGFFGIAVSSFICILIVEKNQMFRKTELR
Sbjct: 361 FNGTTYPITIGFFGIAVSSFICILIVEKNQMFRKTELR 398


>gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 242

 Score = 25.4 bits (54), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 3  FVIVIAMLMAINSLGIDIILP----CLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFY 58
          FV+ +++++  +SL +D+ LP       +  +++   ++ YG  + S   +G  I++++ 
Sbjct: 11 FVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYG--IWSGNYVGLHISRLYE 68

Query: 59 -GPLSDRFGRK 68
            PL+D   RK
Sbjct: 69 THPLADTINRK 79


>gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 413

 Score = 23.9 bits (50), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 189 RPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN 242
           RPL+++  LH    + +   +   N    L++  I   +N S+ IY      G+
Sbjct: 332 RPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGH 385


>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 869

 Score = 23.1 bits (48), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 42  HLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVI 77
           ++ +F  + YG   IF  P +D+        +GL I
Sbjct: 327 YIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPI 362


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.333    0.146    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,875
Number of Sequences: 1233
Number of extensions: 10099
Number of successful extensions: 44
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 8
length of query: 398
length of database: 328,796
effective HSP length: 76
effective length of query: 322
effective length of database: 235,088
effective search space: 75698336
effective search space used: 75698336
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 39 (19.6 bits)