BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780967|ref|YP_003065380.1| probable multidrug resistance transporter protein [Candidatus Liberibacter asiaticus str. psy62] (398 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780967|ref|YP_003065380.1| probable multidrug resistance transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/398 (100%), Positives = 398/398 (100%) Query: 1 MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60 MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP Sbjct: 1 MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60 Query: 61 LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIY 120 LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIY Sbjct: 61 LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIY 120 Query: 121 DGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFP 180 DGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFP Sbjct: 121 DGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFP 180 Query: 181 ETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQL 240 ETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQL Sbjct: 181 ETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQL 240 Query: 241 GNLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPI 300 GNLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPI Sbjct: 241 GNLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPI 300 Query: 301 HLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQS 360 HLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQS Sbjct: 301 HLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQS 360 Query: 361 FNGTTYPITIGFFGIAVSSFICILIVEKNQMFRKTELR 398 FNGTTYPITIGFFGIAVSSFICILIVEKNQMFRKTELR Sbjct: 361 FNGTTYPITIGFFGIAVSSFICILIVEKNQMFRKTELR 398 >gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 7/71 (9%) Query: 3 FVIVIAMLMAINSLGIDIILP----CLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFY 58 FV+ +++++ +SL +D+ LP + +++ ++ YG + S +G I++++ Sbjct: 11 FVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYG--IWSGNYVGLHISRLYE 68 Query: 59 -GPLSDRFGRK 68 PL+D RK Sbjct: 69 THPLADTINRK 79 >gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 413 Score = 23.9 bits (50), Expect = 5.6, Method: Compositional matrix adjust. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 189 RPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN 242 RPL+++ LH + + + N L++ I +N S+ IY G+ Sbjct: 332 RPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGH 385 >gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 869 Score = 23.1 bits (48), Expect = 9.6, Method: Compositional matrix adjust. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 42 HLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVI 77 ++ +F + YG IF P +D+ +GL I Sbjct: 327 YIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPI 362 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.333 0.146 0.437 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 244,875 Number of Sequences: 1233 Number of extensions: 10099 Number of successful extensions: 44 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 8 length of query: 398 length of database: 328,796 effective HSP length: 76 effective length of query: 322 effective length of database: 235,088 effective search space: 75698336 effective search space used: 75698336 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 39 (19.6 bits)