HHsearch alignment for GI: 254780968 and conserved domain: PRK13703

>PRK13703 conjugal pilus assembly protein TraF; Provisional.
Probab=92.36  E-value=0.85  Score=26.17  Aligned_cols=69  Identities=19%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCC--HHH-----HHHHHHHHCCCCC
Q ss_conf             8999999996448979994489998998317999999997----4996589971144--037-----9999997347877
Q gi|254780968|r    4 SVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDS----LGVSYKGIDVLAD--DAL-----RQSIKEYSNWPTI   72 (106)
Q Consensus         4 ~~~~~i~~~i~~~~Vvifskgt~~~p~C~~c~~ak~lL~~----~~i~y~~~dv~~d--~~~-----~~~l~~~sg~~Tv   72 (106)
T Consensus       132 ~~~~~l~~la~~~GLffFy~~~-----c~~c~~~apil~~fa~~yg~~vi~VS~DG~~~p~fp~~r~d~Gqa~~l~V~~~  206 (247)
T PRK13703        132 QQRQAIAKLAEHYGLMFFYRGQ-----DPIDGQLAQVINGFRKTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF  206 (247)
T ss_pred             HHHHHHHHHHHCCEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf             9999999998712389998689-----80469989999999998597799983389868777877778678973698416


Q ss_pred             CEEEE
Q ss_conf             63898
Q gi|254780968|r   73 PQLYV   77 (106)
Q Consensus        73 PqIFv   77 (106)
T Consensus       207 PAL~L  211 (247)
T PRK13703        207 PALML  211 (247)
T ss_pred             CEEEE
T ss_conf             56999