HHsearch alignment for GI: 254780968 and conserved domain: PRK13703
>PRK13703 conjugal pilus assembly protein TraF; Provisional.
Probab=92.36 E-value=0.85 Score=26.17 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCC--HHH-----HHHHHHHHCCCCC
Q ss_conf 8999999996448979994489998998317999999997----4996589971144--037-----9999997347877
Q gi|254780968|r 4 SVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDS----LGVSYKGIDVLAD--DAL-----RQSIKEYSNWPTI 72 (106)
Q Consensus 4 ~~~~~i~~~i~~~~Vvifskgt~~~p~C~~c~~ak~lL~~----~~i~y~~~dv~~d--~~~-----~~~l~~~sg~~Tv 72 (106)
T Consensus 132 ~~~~~l~~la~~~GLffFy~~~-----c~~c~~~apil~~fa~~yg~~vi~VS~DG~~~p~fp~~r~d~Gqa~~l~V~~~ 206 (247)
T PRK13703 132 QQRQAIAKLAEHYGLMFFYRGQ-----DPIDGQLAQVINGFRKTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF 206 (247)
T ss_pred HHHHHHHHHHHCCEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 9999999998712389998689-----80469989999999998597799983389868777877778678973698416
Q ss_pred CEEEE
Q ss_conf 63898
Q gi|254780968|r 73 PQLYV 77 (106)
Q Consensus 73 PqIFv 77 (106)
T Consensus 207 PAL~L 211 (247)
T PRK13703 207 PALML 211 (247)
T ss_pred CEEEE
T ss_conf 56999