HHsearch alignment for GI: 254780968 and conserved domain: TIGR02738
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB; InterPro: IPR014109 This entry includes thiol-disulphide isomerase (TrbB), a protein that is involved in conjugative transfer of plasmid DNA, specifically in the F-type system. TrbB has been predicted to contain a thioredoxin fold, it also contains a conserved pair of cysteines and has been shown to function as a thiol disulphide isomerase by complementation of Escherichia coli DsbA mutants . TtbB is believed to be involved in pilin assembly . TrbB is closely related to TraF (IPR014110 from INTERPRO) though somewhat longer lacking the cysteine motif and is apparently not functional as a disulphide bond isomerase..
Probab=94.44 E-value=0.042 Score=33.71 Aligned_cols=66 Identities=18% Similarity=0.418 Sum_probs=44.9
Q ss_pred HHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC----CCCEEEEECCCCH--H-------HHHHHHHHH--C--CC-C
Q ss_conf 99964489799944899989983179999999974----9965899711440--3-------799999973--4--78-7
Q gi|254780968|r 10 QNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSL----GVSYKGIDVLADD--A-------LRQSIKEYS--N--WP-T 71 (106)
Q Consensus 10 ~~~i~~~~Vvifskgt~~~p~C~~c~~ak~lL~~~----~i~y~~~dv~~d~--~-------~~~~l~~~s--g--~~-T 71 (106)
T Consensus 67 ~~~~~~~~~vfF~~S~-----CPyCh~FAP~LK~f~~~~~~~V~a~SlDG~g~~~FP~~~P~tpE~~~~~F~~~ey~~~~ 141 (176)
T TIGR02738 67 KALLDDYALVFFYQST-----CPYCHQFAPVLKRFSQQFGLSVYAFSLDGQGLAEFPDALPATPEVMQTFFPNGEYRPVV 141 (176)
T ss_pred HHHHHCCEEEEEECCC-----CCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEC
T ss_conf 8544435078886288-----96400226577878876287537887338978778876578765787633889703010
Q ss_pred CCEEE-ECCE
Q ss_conf 76389-8998
Q gi|254780968|r 72 IPQLY-VKGD 80 (106)
Q Consensus 72 vPqIF-v~G~ 80 (106)
T Consensus 142 ~PalFLvNvn 151 (176)
T TIGR02738 142 TPALFLVNVN 151 (176)
T ss_pred CCEEEEECCC
T ss_conf 2322333153