HHsearch alignment for GI: 254780968 and conserved domain: TIGR02740
>TIGR02740 TraF-like TraF-like protein; InterPro: IPR014111 This entry contains TraF-like proteins that are related to the F-type conjugation system pilus assembly proteins TraF (IPR014110 from INTERPRO)and TrbB (IPR014109 from INTERPRO) both of which exhibit a thioredoxin fold . The proteins in this entry have the same length and architecture as TraF, but lack the CXXC-motif found in TrbB that is believed to be responsible for the disulphide isomerase activity..
Probab=92.48 E-value=0.57 Score=27.15 Aligned_cols=66 Identities=15% Similarity=0.348 Sum_probs=44.3
Q ss_pred HHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCCH-------H--HHHHHHHHHCC---CC
Q ss_conf 999996448979994489998998317999999997----49965899711440-------3--79999997347---87
Q gi|254780968|r 8 IIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDS----LGVSYKGIDVLADD-------A--LRQSIKEYSNW---PT 71 (106)
Q Consensus 8 ~i~~~i~~~~Vvifskgt~~~p~C~~c~~ak~lL~~----~~i~y~~~dv~~d~-------~--~~~~l~~~sg~---~T 71 (106)
T Consensus 188 v~~~la~~~GlFFFf~S~----~C~~C~~~~pil~~~~~~YG~~V~pvS~DG~PLp~G~FPn~~pD~G~a~~L~iGtd~~ 263 (306)
T TIGR02740 188 VLKELAKKSGLFFFFKSD----DCPYCHAQAPILKAFEDRYGIEVLPVSVDGGPLPGGKFPNARPDAGQAQKLKIGTDRT 263 (306)
T ss_pred HHHHHHCCCEEEEEEECC----CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf 999974075168997278----8662268999999999731970899984588878788888521403675404676654
Q ss_pred CCEEEE
Q ss_conf 763898
Q gi|254780968|r 72 IPQLYV 77 (106)
Q Consensus 72 vPqIFv 77 (106)
T Consensus 264 VPA~~L 269 (306)
T TIGR02740 264 VPAVFL 269 (306)
T ss_pred CCEEEE
T ss_conf 665899