HHsearch alignment for GI: 254780968 and conserved domain: TIGR02740

>TIGR02740 TraF-like TraF-like protein; InterPro: IPR014111 This entry contains TraF-like proteins that are related to the F-type conjugation system pilus assembly proteins TraF (IPR014110 from INTERPRO)and TrbB (IPR014109 from INTERPRO) both of which exhibit a thioredoxin fold . The proteins in this entry have the same length and architecture as TraF, but lack the CXXC-motif found in TrbB that is believed to be responsible for the disulphide isomerase activity..
Probab=92.48  E-value=0.57  Score=27.15  Aligned_cols=66  Identities=15%  Similarity=0.348  Sum_probs=44.3

Q ss_pred             HHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCCH-------H--HHHHHHHHHCC---CC
Q ss_conf             999996448979994489998998317999999997----49965899711440-------3--79999997347---87
Q gi|254780968|r    8 IIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDS----LGVSYKGIDVLADD-------A--LRQSIKEYSNW---PT   71 (106)
Q Consensus         8 ~i~~~i~~~~Vvifskgt~~~p~C~~c~~ak~lL~~----~~i~y~~~dv~~d~-------~--~~~~l~~~sg~---~T   71 (106)
T Consensus       188 v~~~la~~~GlFFFf~S~----~C~~C~~~~pil~~~~~~YG~~V~pvS~DG~PLp~G~FPn~~pD~G~a~~L~iGtd~~  263 (306)
T TIGR02740       188 VLKELAKKSGLFFFFKSD----DCPYCHAQAPILKAFEDRYGIEVLPVSVDGGPLPGGKFPNARPDAGQAQKLKIGTDRT  263 (306)
T ss_pred             HHHHHHCCCEEEEEEECC----CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf             999974075168997278----8662268999999999731970899984588878788888521403675404676654


Q ss_pred             CCEEEE
Q ss_conf             763898
Q gi|254780968|r   72 IPQLYV   77 (106)
Q Consensus        72 vPqIFv   77 (106)
T Consensus       264 VPA~~L  269 (306)
T TIGR02740       264 VPAVFL  269 (306)
T ss_pred             CCEEEE
T ss_conf             665899