HHsearch alignment for GI: 254780968 and conserved domain: TIGR03140

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.46  E-value=0.00041  Score=45.34  Aligned_cols=75  Identities=21%  Similarity=0.238  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             8689999999964489799944899989983179999999974-----99658997114403799999973478776389
Q gi|254780968|r    2 NSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSL-----GVSYKGIDVLADDALRQSIKEYSNWPTIPQLY   76 (106)
Q Consensus         2 ~~~~~~~i~~~i~~~~Vvifskgt~~~p~C~~c~~ak~lL~~~-----~i~y~~~dv~~d~~~~~~l~~~sg~~TvPqIF   76 (106)
T Consensus       105 ~~~~~~~I~~i~~~~~~~~~v-----SlsC~~CPdvVqAln~~A~~Np~I~~~miDg----~~f~~~~~~~~I~sVP~v~  175 (515)
T TIGR03140       105 DEGIIDRIRRLNGPLHFETYV-----SLTCQNCPDVVQALNQMALLNPNISHTMIDG----ALFQDEVEALGIQGVPAVF  175 (515)
T ss_pred             CHHHHHHHHHCCCCCEEEEEE-----ECCCCCCHHHHHHHHHHHHCCCCCEEEEEEC----HHCHHHHHHCCCCCCCEEE
T ss_conf             999999998479982389998-----4688898799999999986099852999972----1077789864867477277


Q ss_pred             ECCEEECCH
Q ss_conf             899894276
Q gi|254780968|r   77 VKGDFIGGC   85 (106)
Q Consensus        77 v~G~~IGG~   85 (106)
T Consensus       176 ~n~e~~~~g  184 (515)
T TIGR03140       176 LNGEEFHNG  184 (515)
T ss_pred             ECCEEEEEC
T ss_conf             788387225