HHsearch alignment for GI: 254780968 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.46 E-value=0.00041 Score=45.34 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 8689999999964489799944899989983179999999974-----99658997114403799999973478776389
Q gi|254780968|r 2 NSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSL-----GVSYKGIDVLADDALRQSIKEYSNWPTIPQLY 76 (106)
Q Consensus 2 ~~~~~~~i~~~i~~~~Vvifskgt~~~p~C~~c~~ak~lL~~~-----~i~y~~~dv~~d~~~~~~l~~~sg~~TvPqIF 76 (106)
T Consensus 105 ~~~~~~~I~~i~~~~~~~~~v-----SlsC~~CPdvVqAln~~A~~Np~I~~~miDg----~~f~~~~~~~~I~sVP~v~ 175 (515)
T TIGR03140 105 DEGIIDRIRRLNGPLHFETYV-----SLTCQNCPDVVQALNQMALLNPNISHTMIDG----ALFQDEVEALGIQGVPAVF 175 (515)
T ss_pred CHHHHHHHHHCCCCCEEEEEE-----ECCCCCCHHHHHHHHHHHHCCCCCEEEEEEC----HHCHHHHHHCCCCCCCEEE
T ss_conf 999999998479982389998-----4688898799999999986099852999972----1077789864867477277
Q ss_pred ECCEEECCH
Q ss_conf 899894276
Q gi|254780968|r 77 VKGDFIGGC 85 (106)
Q Consensus 77 v~G~~IGG~ 85 (106)
T Consensus 176 ~n~e~~~~g 184 (515)
T TIGR03140 176 LNGEEFHNG 184 (515)
T ss_pred ECCEEEEEC
T ss_conf 788387225