HHsearch alignment for GI: 254780968 and conserved domain: cd02949
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.93 E-value=0.002 Score=41.30 Aligned_cols=69 Identities=17% Similarity=0.402 Sum_probs=44.7
Q ss_pred HHHHHHH-C-CEEEEECCCCCCCCCCHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCE--EEEC
Q ss_conf 9999644-8-9799944899989983179999999974------996589971144037999999734787763--8989
Q gi|254780968|r 9 IQNEIKK-N-DVVLFMKGTPTSPRCGFSGKVVQVLDSL------GVSYKGIDVLADDALRQSIKEYSNWPTIPQ--LYVK 78 (106)
Q Consensus 9 i~~~i~~-~-~Vvifskgt~~~p~C~~c~~ak~lL~~~------~i~y~~~dv~~d~~~~~~l~~~sg~~TvPq--IFv~ 78 (106)
T Consensus 5 ~~~l~~~s~k~VlV~F----~A~wCgpCk~l~P~l~~la~ey~~~v~f~kvDvd~~~~la----~~~~I~~~PT~~~fk~ 76 (97)
T cd02949 5 LRKLYHESDRLILVLY----TSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIA----EAAGIMGTPTVQFFKD 76 (97)
T ss_pred HHHHHHHCCCEEEEEE----ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH----HHCCCCCCCEEEEEEC
T ss_conf 8999985799499999----8999856564269999999983797199999688798899----9819931778999999
Q ss_pred CEEECCH
Q ss_conf 9894276
Q gi|254780968|r 79 GDFIGGC 85 (106)
Q Consensus 79 G~~IGG~ 85 (106)
T Consensus 77 g~~v~~~ 83 (97)
T cd02949 77 KELVKEI 83 (97)
T ss_pred CEEEEEE
T ss_conf 9996888