HHsearch alignment for GI: 254780968 and conserved domain: cd03002
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=95.92 E-value=0.036 Score=34.07 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=39.8
Q ss_pred HHHHHH-C-C-EEEEECCCCCCCCCCHHHHHHHHHHHCC------CCEEEEECCCCHHHHHHHHHHHCCCCCCEE--EEC
Q ss_conf 999644-8-9-7999448999899831799999999749------965899711440379999997347877638--989
Q gi|254780968|r 10 QNEIKK-N-D-VVLFMKGTPTSPRCGFSGKVVQVLDSLG------VSYKGIDVLADDALRQSIKEYSNWPTIPQL--YVK 78 (106)
Q Consensus 10 ~~~i~~-~-~-Vvifskgt~~~p~C~~c~~ak~lL~~~~------i~y~~~dv~~d~~~~~~l~~~sg~~TvPqI--Fv~ 78 (106)
T Consensus 11 d~~V~~~~~~~lV~F-----yApWC~~Ck~~~P~~~~~a~~~~~~~~~~~vd~d~~~~--~~i~~~~~I~~~PTi~~f~~ 83 (109)
T cd03002 11 DKVVHNTNYTTLVEF-----YAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN--KPLCGKYGVQGFPTLKVFRP 83 (109)
T ss_pred HHHHHCCCCCEEEEE-----ECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC--HHHHHHCCCCCCCEEEEEEC
T ss_conf 999855998399999-----88868116776799999999808872289996563424--65798769844887999959
Q ss_pred CEE
Q ss_conf 989
Q gi|254780968|r 79 GDF 81 (106)
Q Consensus 79 G~~ 81 (106)
T Consensus 84 G~~ 86 (109)
T cd03002 84 PKK 86 (109)
T ss_pred CCC
T ss_conf 640