HHsearch alignment for GI: 254780968 and conserved domain: cd03061

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.19  E-value=0.0043  Score=39.45  Aligned_cols=78  Identities=21%  Similarity=0.306  Sum_probs=59.9

Q ss_pred             CCEEEEECCCCC---CCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCHHHHHHHH
Q ss_conf             897999448999---89983179999999974996589971144037999999734787763898998942769999999
Q gi|254780968|r   16 NDVVLFMKGTPT---SPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMF   92 (106)
Q Consensus        16 ~~Vvifskgt~~---~p~C~~c~~ak~lL~~~~i~y~~~dv~~d~~~~~~l~~~sg~~TvPqIFv~G~~IGG~d~l~~l~   92 (106)
T Consensus         4 p~iel~vKAs~~~~~~G~CPF~QR~~mvL~~Kgv~f~vt~VDl~-~kPe~f~~~~p~~~~PvL~~~g~~~~ds~~I~e~l   82 (91)
T cd03061           4 PEIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMK-RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFL   82 (91)
T ss_pred             CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHHHHCCCCCCCEEEECCEEEECHHHHHHHH
T ss_conf             62799999257875455777789999999974997458985546-69299996598999999988999963389999999


Q ss_pred             HC
Q ss_conf             88
Q gi|254780968|r   93 ES   94 (106)
Q Consensus        93 ~~   94 (106)
T Consensus        83 Ee   84 (91)
T cd03061          83 EE   84 (91)
T ss_pred             HH
T ss_conf             85