RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780968|ref|YP_003065381.1| hypothetical protein
CLIBASIA_04345 [Candidatus Liberibacter asiaticus str. psy62]
(106 letters)
>gnl|CDD|161841 TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The
gene for the member of this glutaredoxin family in E.
coli, originally designated ydhD, is now designated
grxD. Its protein, Grx4, is a monothiol glutaredoxin
similar to Grx5 of yeast, which is involved in
iron-sulfur cluster formation.
Length = 97
Score = 181 bits (463), Expect = 2e-47
Identities = 57/97 (58%), Positives = 75/97 (77%)
Query: 5 VNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIK 64
I+ +IK+N VVL+MKGTP P+CGFS + VQ+L + GV + ++VL D +RQ IK
Sbjct: 1 TIERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIK 60
Query: 65 EYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
EYSNWPTIPQLYVKG+F+GGCDI+ EM++SGEL +L
Sbjct: 61 EYSNWPTIPQLYVKGEFVGGCDIIMEMYQSGELQTLL 97
>gnl|CDD|182759 PRK10824, PRK10824, glutaredoxin-4; Provisional.
Length = 115
Score = 112 bits (282), Expect = 2e-26
Identities = 42/93 (45%), Positives = 66/93 (70%)
Query: 9 IQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSN 68
IQ +I +N ++L+MKG+P P CGFS + VQ L + G + +D+L + +R + +Y+N
Sbjct: 8 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYAN 67
Query: 69 WPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
WPT PQL+V G+ +GGCDIV EM++ GEL +++
Sbjct: 68 WPTFPQLWVDGELVGGCDIVIEMYQRGELQQLI 100
>gnl|CDD|173357 PTZ00062, PTZ00062, glutaredoxin; Provisional.
Length = 204
Score = 112 bits (281), Expect = 3e-26
Identities = 45/96 (46%), Positives = 65/96 (67%)
Query: 9 IQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSN 68
I+ I+ + ++LFMKG+ T P C FS VV +L+S GV Y+ ++ D LR+ +K YSN
Sbjct: 106 IERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSN 165
Query: 69 WPTIPQLYVKGDFIGGCDIVCEMFESGELHEILSID 104
WPT PQLYV G+ IGG DI+ E++ES L +++ D
Sbjct: 166 WPTYPQLYVNGELIGGHDIIKELYESNSLRKVIPDD 201
>gnl|CDD|162749 TIGR02181, GRX_bact, Glutaredoxin, GrxC family. This family of
glutaredoxins includes the E. coli protein GrxC (Grx3)
which appears to have a secondary role in reducing
ribonucleotide reductase (in the absence of GrxA)
possibly indicating a role in the reduction of other
protein disulfides.
Length = 79
Score = 50.3 bits (121), Expect = 1e-07
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGGCD 86
T P C + + +L S GV++ I V D ALR + + S T+PQ+++ +GGCD
Sbjct: 5 TKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCD 64
Query: 87 IVCEMFESGELHEIL 101
+ + G+L +L
Sbjct: 65 DLYALDREGKLDPLL 79
>gnl|CDD|162748 TIGR02180, GRX_euk, Glutaredoxin. This model represents eukaryotic
glutaredoxins and includes sequences from fungi, plants
and metazoans as well as viruses.
Length = 84
Score = 47.6 bits (114), Expect = 7e-07
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 18 VVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYK----GIDVLAD-DALRQSIKEYSNWPTI 72
VV+F K C + K ++L L V +D L++ ++ ++E + T+
Sbjct: 1 VVVFSKSY-----CPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTV 55
Query: 73 PQLYVKGDFIGGCDIVCEMFESGELHEIL 101
P +++ G FIGGC + +++SG+L E+L
Sbjct: 56 PNIFINGKFIGGCSDLLALYKSGKLAELL 84
>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional.
Length = 83
Score = 46.4 bits (110), Expect = 2e-06
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGGCD 86
T C F + +L+S GVS++ I + D A R+ + + S T+PQ+++ IGGCD
Sbjct: 8 TKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCD 67
Query: 87 IVCEMFESGELHEILS 102
+ + G L +L
Sbjct: 68 DLYALDARGGLDPLLK 83
>gnl|CDD|131245 TIGR02190, GlrX-dom, Glutaredoxin-family domain. This C-terminal
domain with homology to glutaredoxin is fused to an
N-terminal peroxiredoxin-like domain.
Length = 79
Score = 39.1 bits (91), Expect = 2e-04
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 14 KKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIP 73
K VV+F T P C F K L G ++ I L +DA +S++ + T+P
Sbjct: 6 KPESVVVF-----TKPGCPFCAKAKATLKEKGYDFEEI-PLGNDARGRSLRAVTGATTVP 59
Query: 74 QLYVKGDFIGGCD 86
Q+++ G IGG D
Sbjct: 60 QVFIGGKLIGGSD 72
>gnl|CDD|131251 TIGR02196, GlrX_YruB, Glutaredoxin-like protein, YruB-family.
This glutaredoxin-like protein family contains the
conserved CxxC motif and includes the Clostridium
pasteurianum protein YruB which has been cloned from a
rubredoxin operon. Somewhat related to NrdH, it is
unknown whether this protein actually interacts with
glutathione/glutathione reducatase, or, like NrdH, some
other reductant system.
Length = 74
Score = 32.0 bits (73), Expect = 0.033
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGGCD 86
T+P C K + L S G++++ IDV D A R+ + + +P + + I G D
Sbjct: 6 TTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFD 65
Query: 87 I 87
Sbjct: 66 P 66
>gnl|CDD|183036 PRK11200, grxA, glutaredoxin 1; Provisional.
Length = 85
Score = 29.2 bits (66), Expect = 0.23
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 29 PRCGFSGKVVQVLDSL-----GVSYKGIDVLADDALRQSIKEYSNWP--TIPQLYVKGDF 81
P C + + ++ + L Y+ +D+ A+ + +++ P T+PQ++V
Sbjct: 9 PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKH 68
Query: 82 IGGCD 86
IGGC
Sbjct: 69 IGGCT 73
>gnl|CDD|184751 PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional.
Length = 299
Score = 28.6 bits (64), Expect = 0.32
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 11 NEIKKNDVVL-FMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLA 55
+++K DVV + GT G G + +LD LG+ Y G D +
Sbjct: 49 DQLKSFDVVFNVLHGT-----FGEDGTLQAILDFLGIRYTGSDAFS 89
>gnl|CDD|131238 TIGR02183, GRXA, Glutaredoxin, GrxA family. This model includes
the E. coli glyutaredoxin GrxA which appears to have
primary responsibility for the reduction of
ribonucleotide reductase.
Length = 86
Score = 28.3 bits (63), Expect = 0.48
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 18 VVLFMKGTPTSPRC----GFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWP--T 71
VV+F G P P C + K+ ++ ID+ A+ + +++ P T
Sbjct: 2 VVIF--GRPGCPYCVRAKQLAEKLAIERADF--EFRYIDIHAEGISKADLEKTVGKPVET 57
Query: 72 IPQLYVKGDFIGGC 85
+PQ++V +GGC
Sbjct: 58 VPQIFVDEKHVGGC 71
>gnl|CDD|161986 TIGR00666, PBP4, D-alanyl-D-alanine carboxypeptidase, serine-type,
PBP4 family. In E. coli, this protein is known as
penicillin binding protein 4 (dacB). A signal sequence
is cleaved from a precursor form. The protein is
described as periplasmic in E. coli (Gram-negative) and
extracellular in Actinomadura R39 (Gram-positive).
Unlike some other proteins with similar activity, it
does not form transpeptidation. It is not essential for
viability. This family is related to class A
beta-lactamases.
Length = 345
Score = 28.2 bits (63), Expect = 0.50
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 6 NSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKE 65
++N K ++VL G PT R +V L GV +VL D + S
Sbjct: 45 KGNVENGNLKGNLVLRFGGDPTLKRQDI-RNLVATLKKSGVKQIDGNVLVDTSAFSSHDR 103
Query: 66 YSNWP 70
WP
Sbjct: 104 APGWP 108
>gnl|CDD|180081 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase;
Provisional.
Length = 352
Score = 27.4 bits (62), Expect = 0.79
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 31 CGFSGKVVQVLDSLGVSYKGIDV 53
G S + + L GV IDV
Sbjct: 196 FGISKETAKRLADAGVKA--IDV 216
>gnl|CDD|131255 TIGR02200, GlrX_actino, Glutaredoxin-like protein. This family
of glutaredoxin-like proteins is limited to the
Actinobacteria and contains the conserved CxxC motif.
Length = 77
Score = 27.1 bits (60), Expect = 0.98
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDA 58
+ CG+ ++++ LD LG +Y+ +D+ D+
Sbjct: 6 GTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEG 37
>gnl|CDD|162754 TIGR02189, GlrX-like_plant, Glutaredoxin-like family. This family
of glutaredoxin-like proteins is aparrently limited to
plants. Multiple isoforms are found in A. thaliana and
O.sativa.
Length = 99
Score = 26.6 bits (59), Expect = 1.4
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 9 IQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSN 68
++ + + VV+F + + C V ++L +LGV+ ++ + A + S
Sbjct: 1 VRRMVSEKAVVIFSRSS-----CCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSR 55
Query: 69 W---PTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
P +P ++V G +GG + V + SG L +L
Sbjct: 56 LGCSPAVPAVFVGGKLVGGLENVMALHISGSLVPML 91
>gnl|CDD|162450 TIGR01617, arsC_related, transcriptional regulator, Spx/MgsR
family. This model represents a portion of the
proteins within the larger set covered by Pfam model
pfam03960. That larger family includes a
glutaredoxin-dependent arsenate reductase (TIGR00014).
Characterized members of this family include Spx and
MgsR from Bacillus subtili. Spx is a global regulator
for response to thiol-specific oxidative stress. It
interacts with RNA polymerase. MgsR (modulator of the
general stress response, also called YqgZ) provides a
second level of regulation for more than a third of the
proteins in the B. subtilis general stress regulon
controlled by Sigma-B.
Length = 117
Score = 26.2 bits (58), Expect = 1.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKE 65
SP C K + L++ G+ Y+ ID+ D R+ + +
Sbjct: 5 GSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLD 43
>gnl|CDD|165101 PHA02734, PHA02734, coat protein; Provisional.
Length = 149
Score = 26.0 bits (56), Expect = 2.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 78 KGDFIGGCDIVCEMFESGEL 97
KGD+ GG + + FE+G+L
Sbjct: 8 KGDYAGGAAKILDGFEAGQL 27
>gnl|CDD|150118 pfam09342, DUF1986, Domain of unknown function (DUF1986). This
domain is found in serine proteases and is predicted to
contain disulphide bonds.
Length = 267
Score = 25.8 bits (56), Expect = 2.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 54 LADDALRQSIKEYSNWPTIPQLYVKGDFI 82
+ + Q+ KE +WP I ++YV+G++
Sbjct: 1 NRETEVVQTFKEELHWPWIAKVYVEGNYR 29
>gnl|CDD|183126 PRK11414, PRK11414, colanic acid/biofilm transcriptional regulator;
Provisional.
Length = 221
Score = 25.2 bits (55), Expect = 3.5
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 53 VLADDALRQSIKEYSNWPT----IPQLYVK 78
+ A+ R +I SN P I QL+V+
Sbjct: 132 INANRLFRLAIYHRSNMPILCEMIEQLWVR 161
>gnl|CDD|115203 pfam06531, DUF1108, Protein of unknown function (DUF1108). This
family consists of several bacterial proteins from
Staphylococcus aureus as well as a number of phage
proteins. The function of this family is unknown.
Length = 86
Score = 25.2 bits (55), Expect = 3.6
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 38 VQVLDSLGVSYKGIDV-------LADDALRQSIKEY 66
+QV D V KGI V A D L QSI E+
Sbjct: 33 IQVKDMNNVPIKGIHVIDENDLYTALDILNQSIYEW 68
>gnl|CDD|181617 PRK09034, PRK09034, aspartate kinase; Reviewed.
Length = 454
Score = 25.1 bits (56), Expect = 3.8
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 32 GFSGKVVQVLDSLGVSYK----GID 52
GF KV+Q+L+ G+SY+ GID
Sbjct: 323 GFGRKVLQILEDHGISYEHMPSGID 347
>gnl|CDD|149148 pfam07910, Peptidase_C78, Peptidase family C78. This family
formerly known as DUF1671 has been shown to be a
cysteine peptidase called (Ufm1)-specific protease.
Length = 208
Score = 25.3 bits (56), Expect = 3.9
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 25/101 (24%)
Query: 1 MNSSVNSI--IQNEIKKNDVVLFMKGTPTSPR---CGFSG--------KVVQVLDSLGVS 47
+ V +I IQ ++ KG R GF G + VL SLGV
Sbjct: 52 TSKPVPTIPEIQQMLEDAW----DKGFDAQGRAETGGFVGTRKWIGTTEASAVLTSLGVP 107
Query: 48 YK------GIDVLADDALRQSIKEY--SNWPTIPQLYVKGD 80
K G ++ L + Y S +P +Y++
Sbjct: 108 CKIVDFHSGSELETHPELFDEVANYFESAGGLLPPIYLQHQ 148
>gnl|CDD|184295 PRK13745, PRK13745, anaerobic sulfatase-maturase; Provisional.
Length = 412
Score = 25.2 bits (55), Expect = 3.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 53 VLADDALRQSIKEYSNWPTIPQL 75
V++D+ L + IKEY N T+PQ+
Sbjct: 47 VMSDELLEKFIKEYINSQTMPQV 69
>gnl|CDD|181519 PRK08644, PRK08644, thiamine biosynthesis protein ThiF;
Provisional.
Length = 212
Score = 25.2 bits (56), Expect = 4.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 80 DFIGGCDIVCEMFESGE 96
+ CDIV E F++ E
Sbjct: 113 ELFKDCDIVVEAFDNAE 129
>gnl|CDD|180500 PRK06270, PRK06270, homoserine dehydrogenase; Provisional.
Length = 341
Score = 24.8 bits (55), Expect = 5.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 19 VLFMKGTPTSPRCGFSGKVVQVLDSLGVSYK--GIDVLADDALR 60
+L K R G KVV + DS G + G+D + AL+
Sbjct: 20 LLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLD--LELALK 61
>gnl|CDD|163456 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope
of this family, include type IV secretion/conjugal
transfer proteins such as TraC, VirB4 and TrsE. The
granularity of this protein family definition is chosen
so as to represent one distinctive clade and act as a
marker through which to define and recognize the class
of mobile element it serves.
Length = 893
Score = 24.6 bits (54), Expect = 5.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 57 DALRQSIKEYSNWPTIPQLYVKGD 80
DAL+ S E P + Q Y + +
Sbjct: 67 DALQDSFDELDEAPWVVQFYCQDE 90
>gnl|CDD|179600 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 24.8 bits (55), Expect = 5.8
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 14/44 (31%)
Query: 36 KVVQVLDSL--GVSYKGID-------VLA-----DDALRQSIKE 65
+ +VLDSL G + D VLA DDALR I+
Sbjct: 542 ALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRT 585
>gnl|CDD|135627 PRK05863, PRK05863, sulfur carrier protein ThiS; Provisional.
Length = 65
Score = 24.4 bits (53), Expect = 7.3
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 37 VVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPT 71
V +LDSLG KGI V D S+ S+W T
Sbjct: 18 VAALLDSLGFPEKGIAVAVDW----SVLPRSDWAT 48
>gnl|CDD|183852 PRK13030, PRK13030, 2-oxoacid ferredoxin oxidoreductase;
Provisional.
Length = 1159
Score = 24.2 bits (53), Expect = 7.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 35 GKVVQVLDSLGVSYKGIDVLAD 56
GK VLD G++ KG VL+
Sbjct: 745 GKSASVLDFTGLAQKGGAVLSH 766
>gnl|CDD|167141 PRK01021, lpxB, lipid-A-disaccharide synthase; Reviewed.
Length = 608
Score = 24.0 bits (52), Expect = 8.7
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 65 EYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEILS 102
EY+N +P L+ K +GG + +G+ IL
Sbjct: 163 EYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILC 200
>gnl|CDD|163035 TIGR02826, RNR_activ_nrdG3, anaerobic ribonucleoside-triphosphate
reductase activating protein. Members of this family
represent a set of proteins related to, yet
architecturally different from, the activating protein
for the glycine radical-containing, oxygen-sensitive
ribonucleoside-triphosphate reductase (RNR) as
described in model TIGR02491. Members of this family
are found paired with members of a similarly divergent
set of anaerobic ribonucleoside-triphosphate
reductases. Identification of this protein as an RNR
activitating protein is partly from pairing with a
candidate RNR. It is further supported by our finding
that upstream of these operons are examples of a
conserved regulatory element (described Rodionov and
Gelfand) that is found in nearly all bacteria and that
occurs specifically upstream of operons for all three
classes of RNR genes.
Length = 147
Score = 23.9 bits (52), Expect = 8.9
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 63 IKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGEL 97
I E + +P Y +I GC + C+ S E
Sbjct: 3 INEIIVFQEVPNEYSLAFYITGCPLGCKGCHSPES 37
>gnl|CDD|179769 PRK04180, PRK04180, pyridoxal biosynthesis lyase PdxS; Provisional.
Length = 293
Score = 23.9 bits (53), Expect = 10.0
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 7/25 (28%)
Query: 39 QVLDSLGVSYKGID---VL--ADDA 58
Q+L++LGV Y ID VL AD+
Sbjct: 90 QILEALGVDY--IDESEVLTPADEE 112
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.138 0.407
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,715,946
Number of extensions: 96693
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 45
Length of query: 106
Length of database: 5,994,473
Length adjustment: 72
Effective length of query: 34
Effective length of database: 4,438,697
Effective search space: 150915698
Effective search space used: 150915698
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)