Query gi|254780969|ref|YP_003065382.1| hypothetical protein CLIBASIA_04350 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 79
No_of_seqs 106 out of 1637
Neff 6.0
Searched_HMMs 33803
Date Wed Jun 1 19:42:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780969.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2kdn_A Putative uncharacteriz 99.9 1.6E-27 4.6E-32 172.2 7.3 77 1-78 22-99 (108)
2 >1v60_A BOLA1, riken cDNA 1810 99.9 6.7E-27 2E-31 168.7 9.9 75 4-78 27-108 (123)
3 >1v9j_A BOLA-like protein rike 99.9 2.8E-27 8.2E-32 170.8 4.7 77 1-78 28-106 (113)
4 >2dhm_A Protein BOLA; stationa 99.9 4E-27 1.2E-31 170.0 5.4 76 3-78 9-91 (107)
5 >1xs3_A Hypothetical protein X 99.9 1.5E-26 4.5E-31 166.7 5.7 76 1-78 4-79 (80)
6 >1ny8_A Protein YRBA; structur 99.9 9E-26 2.7E-30 162.5 4.3 75 1-78 4-79 (97)
7 >2pzz_A UPF0201 protein MJ1564 29.2 40 0.0012 15.8 2.4 57 4-62 15-71 (147)
8 >1ubd_C Protein (YY1 zinc fing 16.5 17 0.00051 17.8 -1.5 16 40-55 12-27 (28)
9 >2pt7_G HP1451, hypothetical p 15.4 91 0.0027 13.9 3.6 24 9-33 40-63 (72)
10 >1v33_A DNA primase small subu 15.3 89 0.0026 13.9 1.9 29 6-35 146-174 (220)
No 1
>>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} (A:)
Probab=99.94 E-value=1.6e-27 Score=172.18 Aligned_cols=77 Identities=23% Similarity=0.414 Sum_probs=73.4
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECC-CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 977889999999821996679999748-999669999970466899978999999999998727972688988206788
Q gi|254780969|r 1 MSMNPHEIEKMIKKGIPQSIVTIHDLA-GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS 78 (79)
Q Consensus 1 M~m~~~~I~~~i~~~l~~~~v~V~d~s-g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee 78 (79)
|.|..++|+++|+.+|++++++|.|+| |||+||+|.|||+.|+|+|+|+|||+||++|+++|+ +||||+|+|+||+|
T Consensus 22 ~~~~~~~I~~~L~~~l~~~~i~V~d~S~g~g~hf~v~VVS~~F~G~s~v~RHr~V~~~L~e~i~-~iHAlsi~t~tp~E 99 (108)
T 2kdn_A 22 HMCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQ-NIHAFSMKCHTPLE 99 (108)
T ss_dssp SCSHHHHHHHHHHHHHCCSEEEEEECCCSSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGG-GCSCEEEEEECHHH
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCHHH
T ss_conf 6539999999998558997689997899987679999982787799689999999999999971-24104878089999
No 2
>>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:)
Probab=99.94 E-value=6.7e-27 Score=168.72 Aligned_cols=75 Identities=20% Similarity=0.524 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHCCCCCEEEEEECC-------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 889999999821996679999748-------9996699999704668999789999999999987279726889882067
Q gi|254780969|r 4 NPHEIEKMIKKGIPQSIVTIHDLA-------GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVP 76 (79)
Q Consensus 4 ~~~~I~~~i~~~l~~~~v~V~d~s-------g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tp 76 (79)
.+++|+++|+++|++++++|.|+| |||+||.|.|||+.|+|+|+|+|||+||++|+++|+++||||+|+|+||
T Consensus 27 ~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g~~~Hf~i~IVS~~F~g~s~v~rHr~Vy~~L~~el~~~IHALsikt~tp 106 (123)
T 1v60_A 27 VEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHALAIQAKTP 106 (123)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTTCSEEEEEEECT
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 99999999985089847999977855466689986899999978647987899999999999999748974368781899
Q ss_pred CC
Q ss_conf 88
Q gi|254780969|r 77 DS 78 (79)
Q Consensus 77 ee 78 (79)
+|
T Consensus 107 ~E 108 (123)
T 1v60_A 107 AQ 108 (123)
T ss_dssp TT
T ss_pred HH
T ss_conf 99
No 3
>>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} (A:)
Probab=99.93 E-value=2.8e-27 Score=170.82 Aligned_cols=77 Identities=21% Similarity=0.451 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECC--CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 977889999999821996679999748--999669999970466899978999999999998727972688988206788
Q gi|254780969|r 1 MSMNPHEIEKMIKKGIPQSIVTIHDLA--GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS 78 (79)
Q Consensus 1 M~m~~~~I~~~i~~~l~~~~v~V~d~s--g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee 78 (79)
|.|..++|+++|+++||+++++|.|+| |||+||.|.|||+.|+|+++|+|||+||++|+|+|+ +||||+|+|+||+|
T Consensus 28 ~~~~~~~I~~~L~~~l~~~~i~V~d~S~~g~g~hf~i~VvS~~F~Gks~v~rhr~Vy~~L~~~i~-~iHAlsikt~Tp~E 106 (113)
T 1v9j_A 28 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP-HIHAFEQKTLTPEQ 106 (113)
T ss_dssp SSSCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG-GCSSEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHH-CCEEEEEEECCHHH
T ss_conf 76589999999983489827999967789887379999985112688525889928999999973-14204878289999
No 4
>>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str} (A:)
Probab=99.93 E-value=4e-27 Score=169.96 Aligned_cols=76 Identities=22% Similarity=0.517 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHCCCCCEEEEEECC-------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 7889999999821996679999748-------999669999970466899978999999999998727972688988206
Q gi|254780969|r 3 MNPHEIEKMIKKGIPQSIVTIHDLA-------GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSV 75 (79)
Q Consensus 3 m~~~~I~~~i~~~l~~~~v~V~d~s-------g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~t 75 (79)
|..++|+++|+..|++.+++|.|+| |||+||+|+|||+.|+|+|+|+|||+||++|+++|+++||||+|+|+|
T Consensus 9 ~~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g~~~Hf~v~IVS~~F~G~s~v~rHrlVy~~L~~el~~~IHALsi~t~T 88 (107)
T 2dhm_A 9 MIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYT 88 (107)
T ss_dssp CHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCCCEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 79999999998318986699997877656889987669999970541488899999999999999972897525878389
Q ss_pred CCC
Q ss_conf 788
Q gi|254780969|r 76 PDS 78 (79)
Q Consensus 76 pee 78 (79)
|+|
T Consensus 89 p~E 91 (107)
T 2dhm_A 89 IKE 91 (107)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 5
>>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} (A:)
Probab=99.93 E-value=1.5e-26 Score=166.74 Aligned_cols=76 Identities=39% Similarity=0.764 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 977889999999821996679999748999669999970466899978999999999998727972688988206788
Q gi|254780969|r 1 MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS 78 (79)
Q Consensus 1 M~m~~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee 78 (79)
|+|+.++|+.++++.|+++++.|.| |||+||+|+|||+.|+|+|+|+|||+||++|+++|+++||||+|+|+||+|
T Consensus 4 ~~~~~~~i~~~l~s~l~~~~v~v~~--g~g~Hf~v~IvS~~F~g~s~v~rhrlVy~~L~~~l~~~IHAlsi~t~tp~E 79 (80)
T 1xs3_A 4 RPLDAETIRKLIESGLPEARVDVQG--EDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDE 79 (80)
T ss_dssp SCCHHHHHHHHHHHHSSSCEEEEES--CTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCCEEEEECGGG
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEC--CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9989999999998349997899984--999879999981665889888999999999999876998626878378454
No 6
>>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} (A:)
Probab=99.92 E-value=9e-26 Score=162.50 Aligned_cols=75 Identities=29% Similarity=0.527 Sum_probs=71.3
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEEECCCCC
Q ss_conf 977889999999821996679999748999669999970466899978999999999998727-972688988206788
Q gi|254780969|r 1 MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMG-NALHALSIKTSVPDS 78 (79)
Q Consensus 1 M~m~~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~-~~IHAlsikt~tpee 78 (79)
|.|.+++|+++|++.||++.++|.| ||+||+|+|||+.|+|+|+|+|||+||++|+++|+ +.||||+|+|+||+|
T Consensus 4 ~~~~~~~I~~~L~~~l~~~~v~V~g---d~~hf~i~IvS~~F~Gks~v~RhrlVy~~L~~~i~~g~IHAlsi~t~tp~E 79 (97)
T 1ny8_A 4 DPMENNEIQSVLMNALSLQEVHVSG---DGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAE 79 (97)
T ss_dssp CCCCCHHHHHHHHHHHCCSEEEEEE---SSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEEEECCHHH
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEC---CCCEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHH
T ss_conf 7578999999999539981899968---984899999807768998899999999999998658972433868389999
No 7
>>2pzz_A UPF0201 protein MJ1564; methanococcus jannaschii, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Methanocaldococcus jannaschii DSM2661} (A:)
Probab=29.24 E-value=40 Score=15.83 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88999999982199667999974899966999997046689997899999999999872
Q gi|254780969|r 4 NPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKM 62 (79)
Q Consensus 4 ~~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i 62 (79)
+.+.+.+-|.+-||+..+++.+. .|.+-.+.......+....+-|.+.+-..+...|
T Consensus 15 D~eKV~~Ai~nifp~~~ie~~e~--eGh~gn~~~~~~~l~~~~~lLr~~~ild~~r~~l 71 (147)
T 2pzz_A 15 DKYKVKKAILNIFPKAKLTFIEK--DNEFGEWEGKTKSVEKLKELLRSQSILDAARXVL 71 (147)
T ss_dssp CHHHHHHHHHHHCTTCEEEEEEC--STTCEEEEEEESCCHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCC--CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999998689975354456--8864268732011999999999714699999999
No 8
>>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} (C:31-58)
Probab=16.52 E-value=17 Score=17.82 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.0
Q ss_pred HHHCCCCHHHHHHHHH
Q ss_conf 4668999789999999
Q gi|254780969|r 40 EEFRGKNRIQQHQMVY 55 (79)
Q Consensus 40 ~~F~g~s~i~rhr~Vy 55 (79)
+.|..-|+++||++|.
T Consensus 12 kaf~essklkrh~lvh 27 (28)
T 1ubd_C 12 KAFVESSKLKRHQLVH 27 (28)
T ss_dssp CEESSHHHHHHHGGGT
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 3221112211110121
No 9
>>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} (G:81-152)
Probab=15.42 E-value=91 Score=13.85 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=17.1
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCEE
Q ss_conf 9999821996679999748999669
Q gi|254780969|r 9 EKMIKKGIPQSIVTIHDLAGDGNHY 33 (79)
Q Consensus 9 ~~~i~~~l~~~~v~V~d~sg~~~Hf 33 (79)
-++|++.||+.+|.|.-. .+|..|
T Consensus 40 L~~LRe~fPdKYV~ik~~-~~geky 63 (72)
T 2pt7_G 40 LKKLRKAFPNKYVSIKTN-LNDEKY 63 (72)
T ss_dssp HHHHHHHCTTSCEEEEEC-TTSCEE
T ss_pred HHHHHHHCCCCCEEEEEC-CCCCEE
T ss_conf 998576468870588747-998558
No 10
>>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} (A:1-179,A:304-344)
Probab=15.32 E-value=89 Score=13.89 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=17.3
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCEEEE
Q ss_conf 999999982199667999974899966999
Q gi|254780969|r 6 HEIEKMIKKGIPQSIVTIHDLAGDGNHYAA 35 (79)
Q Consensus 6 ~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i 35 (79)
..+...|++.|.-..+.+. .||-|.|..|
T Consensus 146 ~~L~~~L~eDFGfk~i~~v-FSGRG~Hv~V 174 (220)
T 1v33_A 146 RDTVIILREELGFNDIHII-YSGRGYHIRV 174 (220)
T ss_dssp HHHHHHHHHTTCCCCEEEE-ECSSEEEEEE
T ss_pred HHHHHHHHHCCCCCCEEEE-ECCCEEEEEE
T ss_conf 9999999861698503788-4087689985
Done!