RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780969|ref|YP_003065382.1| hypothetical protein
CLIBASIA_04350 [Candidatus Liberibacter asiaticus str. psy62]
         (79 letters)



>gnl|CDD|145069 pfam01722, BolA, BolA-like protein.  This family consist of the
          morphoprotein BolA from E. coli and its various
          homologues. In E. coli over expression of this protein
          causes round morphology and may be involved in
          switching the cell between elongation and septation
          systems during cell division. The expression of BolA is
          growth rate regulated and is induced during the
          transition into the the stationary phase. BolA is also
          induced by stress during early stages of growth and may
          have a general role in stress response. It has also
          been suggested that BolA can induce the transcription
          of penicillin binding proteins 6 and 5.
          Length = 72

 Score = 78.0 bits (193), Expect = 6e-16
 Identities = 22/70 (31%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 10 KMIKKGIPQSIVTIHDL--AGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALH 67
          K++   +P + + + D    G G+H+   ++S+ F GK+ +++H++VY +L  ++ + +H
Sbjct: 1  KLLTAALPPAHLEVEDESHKGGGSHFKVVVVSDAFEGKSLVKRHRLVYAALKEELASGIH 60

Query: 68 ALSIKTSVPD 77
          ALSIKT  P+
Sbjct: 61 ALSIKTYTPE 70


>gnl|CDD|30620 COG0271, BolA, Stress-induced morphogen (activity unknown)
          [Signal transduction mechanisms].
          Length = 90

 Score = 73.1 bits (179), Expect = 2e-14
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 8/85 (9%)

Query: 1  MSMNPHEIEKMIKKGIPQSIVTIHDLA--------GDGNHYAAEIISEEFRGKNRIQQHQ 52
          MS+    IEK ++   P S + I D +        G G+H+   I+SE F+GK+ + +H+
Sbjct: 1  MSIQRERIEKKLRAAFPPSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHR 60

Query: 53 MVYDSLGNKMGNALHALSIKTSVPD 77
          +VY +L +++   +HAL++ T  P+
Sbjct: 61 LVYSALKDELSGGIHALALHTYTPE 85


>gnl|CDD|34612 COG5007, COG5007, Predicted transcriptional regulator, BolA
          superfamily [Transcription].
          Length = 80

 Score = 71.5 bits (175), Expect = 5e-14
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 4/76 (5%)

Query: 3  MNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKM 62
          M+  EI+ +++  +P   V   ++ GDG+H+    +SEEF GK+R+++ Q+VY  L   +
Sbjct: 1  MDNEEIKSLLENALPLEEV---EVEGDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYI 57

Query: 63 G-NALHALSIKTSVPD 77
            N +HALSIKT  P 
Sbjct: 58 ADNEIHALSIKTYTPA 73


>gnl|CDD|38558 KOG3348, KOG3348, KOG3348, BolA (bacterial stress-induced
          morphogen)-related protein [Signal transduction
          mechanisms].
          Length = 85

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 1  MSMNPHEIEKMIKKGIPQSIVTIHDLA-GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLG 59
          M++    +E+++ + +    V + D++ G G+ +   I+S  F GK+ + +H++V   L 
Sbjct: 1  MTVTEERLEELLTEALEPEHVEVQDVSGGCGSMFDVVIVSAAFEGKSLLARHRLVNSILA 60

Query: 60 NKMGNALHALSIKTSVPD 77
           ++   +HAL+IKT  P+
Sbjct: 61 EEIKE-IHALTIKTYTPE 77


>gnl|CDD|37524 KOG2313, KOG2313, KOG2313, Stress-induced protein UVI31+ [Signal
          transduction mechanisms].
          Length = 100

 Score = 47.4 bits (112), Expect = 9e-07
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 28 GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNA-LHALSIKTSVPD 77
          G   H+  E++S  F G + +++H++VY +L  ++    +HALSI    P 
Sbjct: 48 GAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELAGTGVHALSIMAKTPS 98


>gnl|CDD|146985 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins.  This
          region of unknown function is found in RelA and SpoT of
          Escherichia coli, and their homologues in plants and in
          other eubacteria. RelA is a guanosine
          3',5'-bis-pyrophosphate (ppGpp) synthetase (EC:2.7.6.5)
          while SpoT is thought to be a bifunctional enzyme
          catalysing both ppGpp synthesis and degradation (ppGpp
          3'-pyrophosphohydrolase, (EC:3.1.7.2)). This region is
          often found in association with HD (pfam01966), a
          metal-dependent phosphohydrolase, TGS (pfam02824) which
          is a possible nucleotide-binding region, and the ACT
          regulatory domain (pfam01842).
          Length = 111

 Score = 26.0 bits (58), Expect = 2.4
 Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 6  HEIEKMIKKGIPQSIVTIHDLAG 28
             EKM +KGI      I DL G
Sbjct: 8  SIYEKMRRKGIAFE--EITDLIG 28


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0790    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 904,100
Number of extensions: 37122
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 11
Length of query: 79
Length of database: 6,263,737
Length adjustment: 49
Effective length of query: 30
Effective length of database: 5,204,896
Effective search space: 156146880
Effective search space used: 156146880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)