RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780969|ref|YP_003065382.1| hypothetical protein
CLIBASIA_04350 [Candidatus Liberibacter asiaticus str. psy62]
         (79 letters)



>1xs3_A Hypothetical protein XC975; BOLA-like, structural
          genomics, AN integrated structural and functional
          genomic project, unknown function; NMR {Synthetic} (A:)
          Length = 80

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 1  MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGN 60
            ++   I K+I+ G+P++ V +     DG H+ A ++S  F GK  + +H+MVY +LG 
Sbjct: 4  RPLDAETIRKLIESGLPEARVDVQG--EDGVHFEATVVSPAFVGKAPLARHRMVYATLGE 61

Query: 61 KMGNALHALSIKTSVPD 77
           MG A+HAL +KT  PD
Sbjct: 62 LMGGAIHALQLKTLTPD 78


>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene,
           structural genomics, riken structural
           genomics/proteomics initiative, RSGI; NMR {Mus musculus}
           (A:)
          Length = 123

 Score = 78.8 bits (194), Expect = 3e-16
 Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 1   MSMNPHEIEKMIKKGIPQSIVTIHDL-------AGDGNHYAAEIISEEFRGKNRIQQHQM 53
                  I   +++ +   ++ + +        AG   H+   ++S  F G + +Q+H++
Sbjct: 24  AGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRL 83

Query: 54  VYDSLGNKMGNALHALSIKTSVPD 77
           V+++L  ++   +HAL+I+   P 
Sbjct: 84  VHEALSEELAGPVHALAIQAKTPA 107


>2dhm_A Protein BOLA; stationary-phase, stress-induced,
          morphogene, structural genomics, NPPSFA; NMR
          {Escherichia coli str} (A:)
          Length = 107

 Score = 78.7 bits (194), Expect = 3e-16
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 3  MNPHEIEKMIKKGIPQSIVTIHD-------LAGDGNHYAAEIISEEFRGKNRIQQHQMVY 55
          M    IE+ ++       + + D        AG  +H+   ++S+ F G+  + +H+M+Y
Sbjct: 9  MIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIY 68

Query: 56 DSLGNKMGNALHALSIKTSVPD 77
           +L  ++   +HAL++ T    
Sbjct: 69 STLAEELSTTVHALALHTYTIK 90


>2kdn_A Putative uncharacterized protein PFE0790C; solution
          structure, ssgcid, seattle structural genomics center
          for infectious disease; NMR {Plasmodium falciparum}
          (A:)
          Length = 108

 Score = 76.8 bits (189), Expect = 9e-16
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 1  MSMNPHEIEKMIKKGIPQSIVTIHDL-AGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLG 59
                 IE  +   +  + + + D   G G  + A I+S  F  K  + +H++V   L 
Sbjct: 22 HMCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILK 81

Query: 60 NKMGNALHALSIKTSVPD 77
           ++ N +HA S+K   P 
Sbjct: 82 EELQN-IHAFSMKCHTPL 98


>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG,
          structural genomics, PSI, protein structure initiative;
          NMR {Escherichia coli} (A:)
          Length = 97

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 1  MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGN 60
            M  +EI+ ++   +    V +    GDG+H+    + E F G +R+++ Q VY  L  
Sbjct: 4  DPMENNEIQSVLMNALSLQEVHVS---GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLME 60

Query: 61 KMG-NALHALSIKTSVPD 77
           +  N +HA+SIK   P 
Sbjct: 61 YIADNRIHAVSIKAYTPA 78


>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase
           morphogene, stress-induced morphogene, structural
           genomics; NMR {Mus musculus} (A:)
          Length = 113

 Score = 75.3 bits (185), Expect = 2e-15
 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 1   MSMNPHEIEKMIKKGIPQSIVTIHD--LAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSL 58
           M ++   + + +++ +    V + D  L      +   ++S +F GK  +Q+H++V + L
Sbjct: 28  MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL 87

Query: 59  GNKMGNALHALSIKTSVPD 77
             ++ + +HA   KT  P+
Sbjct: 88  AEELPH-IHAFEQKTLTPE 105


>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
          two-turns helix; 2.00A {Sulfolobus shibatae}
          (A:230-311)
          Length = 82

 Score = 24.3 bits (53), Expect = 6.5
 Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 1  MSMNPHEIEKMI---KKGIPQSIVTIHDLAGDGNHYAAEII 38
            ++  EI+ +I   K+        +++    G+  A +I+
Sbjct: 6  YGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKIL 46


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 580,725
Number of extensions: 21765
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 15
Length of query: 79
Length of database: 4,956,049
Length adjustment: 44
Effective length of query: 35
Effective length of database: 3,468,629
Effective search space: 121402015
Effective search space used: 121402015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)