BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780969|ref|YP_003065382.1| hypothetical protein
CLIBASIA_04350 [Candidatus Liberibacter asiaticus str. psy62]
         (79 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780969|ref|YP_003065382.1| hypothetical protein CLIBASIA_04350 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 79

 Score =  164 bits (415), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGN 60
          MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGN
Sbjct: 1  MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGN 60

Query: 61 KMGNALHALSIKTSVPDSQ 79
          KMGNALHALSIKTSVPDSQ
Sbjct: 61 KMGNALHALSIKTSVPDSQ 79


>gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 101

 Score = 37.0 bits (84), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 31 NHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDSQ 79
           H   +I+S  F G ++  +H+ +YD L  ++   LHALSI+   PD +
Sbjct: 47 THIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHALSIEAFSPDEK 95


>gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 692

 Score = 22.3 bits (46), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 6   HEIEKMIKKGIPQSIVTIHDL 26
           + I + I KGIP +IVT+ ++
Sbjct: 636 NSIRQYIDKGIPLTIVTLPEI 656


>gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62]
          Length = 335

 Score = 21.9 bits (45), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 5   PHEIEKMIKKGIPQSIVTIHD 25
           P E   +   GIPQ +  +HD
Sbjct: 304 PFEFSSITGHGIPQILECLHD 324


>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 820

 Score = 21.2 bits (43), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 6   HEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFR 43
           + +E +++K  P ++    +     NHY  EI+S + R
Sbjct: 487 YPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLR 522


>gi|254780384|ref|YP_003064797.1| serralysin [Candidatus Liberibacter asiaticus str. psy62]
          Length = 665

 Score = 20.0 bits (40), Expect = 7.2,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 25  DLAGDGNHYAAEIIS 39
           D  GDGN+Y +++ S
Sbjct: 642 DYFGDGNYYDSDLYS 656


>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 354

 Score = 20.0 bits (40), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 42  FRGKNRIQQHQMVYDSLGNKM 62
           F+GK  ++  ++ YD  G K+
Sbjct: 135 FKGKGILKTRRLGYDGKGQKV 155


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.130    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,980
Number of Sequences: 1233
Number of extensions: 1743
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 79
length of database: 328,796
effective HSP length: 49
effective length of query: 30
effective length of database: 268,379
effective search space:  8051370
effective search space used:  8051370
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.6 bits)
S2: 31 (16.5 bits)