HHsearch alignment for GI: 254780970 and conserved domain: COG0611
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism].
Probab=99.94 E-value=3.7e-25 Score=191.47 Aligned_cols=262 Identities=22% Similarity=0.269 Sum_probs=184.8
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCC---C-CCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 565311210001100001357631420377762279730453---2-100001001135678977764102785102232
Q gi|254780970|r 416 WVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVT---P-RYVKADPFEGTKQAVAECWRNIIATGAKPLAIT 491 (737)
Q Consensus 416 ~i~~qyD~~V~g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~---p-~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait 491 (737)
T Consensus 8 lI~~~~~~~~~~~~~~~~GDDaA~v~~~~~--~~lvvttD~lv~~~hF~~~~~p~d~G~Ka~a~NlSDlAAMGa~P~~~~ 85 (317)
T COG0611 8 LIKRYFKRRQREDVVLGIGDDAALVDAPEG--QRLVVTTDMLVEGTHFPPDMTPEDLGWKALAVNLSDLAAMGARPKAFL 85 (317)
T ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEECCCC--CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHE
T ss_conf 999998403765533257776479815888--648999612125355699999999878999988889997488765342
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 21024566686213469999999985221028866544320011236866676311122223335202331021438980
Q gi|254780970|r 492 DNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDL 571 (737)
Q Consensus 492 ~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~ 571 (737)
T Consensus 86 lsl~lP~-~~d~~--~~~~~~~Gi~e~~~~y~~~lIGG------Dt~~~--~l~is~t~iG~~~~~~-~l~R~gAkpGD~ 153 (317)
T COG0611 86 LSLGLPP-DLDEE--WLEALADGIFEAAKKYGVKLIGG------DTNRG--PLSISVTAIGVLPKGR-ALLRSGAKPGDL 153 (317)
T ss_pred EEEECCC-CCCHH--HHHHHHHHHHHHHHHCCCEEECC------CCCCC--CEEEEEEEEEECCCCC-CEECCCCCCCCE
T ss_conf 6552899-99999--99999999999999829808643------36787--3589999999617874-100469999999
Q ss_pred EEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH------HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 75137766554326788886116789996479899999999------999999959806994648657999999998458
Q gi|254780970|r 572 ILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGF------FVLSMINAKKITACHDISTGGLIITLAEMTISS 645 (737)
Q Consensus 572 I~liG~~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~------~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as 645 (737)
T Consensus 154 v~vtG~lG~----saagl~ll~~--~~~~~~~~~l~~r~~~P~Prv~~g~~l~~--~a~aa~DiSD-GL~~dL~~i~~aS 224 (317)
T COG0611 154 VAVTGTLGR----SAAGLELLLN--VLGPEDEEELIERHLRPTPRVELGLALAK--LASAAMDISD-GLAADLGHIARAS 224 (317)
T ss_pred EEECCCCCH----HHHHHHHHHC--CCCCCHHHHHHHHHCCCCCCHHHHHHHHH--HHHHHEECCH-HHHHHHHHHHHHC
T ss_conf 999188766----4899999961--46753038999984499997567899998--8777512306-5999999999982
Q ss_pred CCCEEEEECCCC-----------CCCHHHH--HHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 970899805666-----------8987888--729883218999968809989999985798499989987
Q gi|254780970|r 646 AKGMDIILPIEI-----------EKDPKPF--LFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVS 703 (737)
Q Consensus 646 ~~G~~I~L~~~~-----------~~d~~~~--LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt 703 (737)
T Consensus 225 ~vg~~I~~~~lp~~~~~~~~~~~~~~~~~~aL~gGEDyE-L~ft~p~~~~~~~~~~~~~~~--~~~IG~v~ 292 (317)
T COG0611 225 GVGIVIDEDLLPLSDAVLEALDELGDPLEWALSGGEDYE-LVFTVPEENREALLDALRSLG--VTIIGRVT 292 (317)
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHCCCCCEE-EEEEECCHHHHHHHHHHHHCC--CEEEEEEE
T ss_conf 981999843378867789877544778999863687448-999837024799999987549--66999996