HHsearch alignment for GI: 254780970 and conserved domain: TIGR02124
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854 This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=99.95 E-value=5.3e-27 Score=204.05 Aligned_cols=260 Identities=25% Similarity=0.378 Sum_probs=196.0
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHH-----HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
Q ss_conf 0011000013576314203777622797304532100001001-----13567897776410278510223221024566
Q gi|254780970|r 425 IQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFE-----GTKQAVAECWRNIIATGAKPLAITDNLNFGNP 499 (737)
Q Consensus 425 V~g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~-----ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P 499 (737)
T Consensus 31 ~f~n~~L~~~eDaA~l~~~g---~~la~sTDSfV----v~PlFFpGGDIGkLAVcGTvNDvav~GA~P~YLs~gfIl--- 100 (345)
T TIGR02124 31 AFGNEILAAMEDAAVLELSG---GRLAFSTDSFV----VDPLFFPGGDIGKLAVCGTVNDVAVSGAKPLYLSCGFIL--- 100 (345)
T ss_pred ECCCCCCCCCCCCCEECCCC---CEEEEECCCEE----ECCCCCCCCCCCCEEEECCHHHHHHCCCHHHHHCCCEEE---
T ss_conf 24875005667741321789---60899807637----546336986711177733324675338445785072013---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEECCCCCCCCCEEECC
Q ss_conf 686213469999999985221028866544--32001123686667631112222333520-233102143898075137
Q gi|254780970|r 500 EKEEIMGQFVHSVKGIREACQILDFPIVSG--NVSFYNETNGQSIFPTPTIAGVGILPDYS-LMTRIDSAHEGDLILMIG 576 (737)
Q Consensus 500 ~~~e~~~ql~~av~gl~d~c~~lgipivgG--kvSl~n~t~~~~I~pTpvi~~vG~v~d~~-~~it~~~k~~Gd~I~liG 576 (737)
T Consensus 101 EEGfp~e~L~~iv~Sm~~~A~~aGV~iV~GDTKVV~kG~~D~iFINT----tGiG~~~~~~v~~~~~~~~~~GD~Ii~sG 176 (345)
T TIGR02124 101 EEGFPIEDLERIVKSMAEAARKAGVKIVAGDTKVVEKGKVDGIFINT----TGIGVVPSGGVIDISAHNIQPGDVIIVSG 176 (345)
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEE----EEEEEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf 40787678999999999999973976897573533457756058813----88888747843376535414576689816
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC----CEEEEEECCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 766554326788886116789996479899999999999999959----8069946486579999999984589708998
Q gi|254780970|r 577 NDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAK----KITACHDISTGGLIITLAEMTISSAKGMDII 652 (737)
Q Consensus 577 ~~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g----~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~ 652 (737)
T Consensus 177 ~iG~H-G~~Il~~R-egl~f~~~i~SDCapL~~lv~---~ll~~~g~~~~v~~~RD~TRGGLA~vLNE~A~~sg~~i~l~ 251 (345)
T TIGR02124 177 SIGDH-GAAILAVR-EGLGFETNIESDCAPLNGLVE---ALLAVGGYEPAVHAMRDATRGGLAAVLNEIAESSGVGIELE 251 (345)
T ss_pred CCHHH-HHHHHHHH-HCCCCCCCCCCHHHHHHHHHH---HHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 84067-89988765-025525673332776589999---99843798714237616785504789999999619927998
Q ss_pred ---ECCC---------CCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHC--CCCEE-EEEEECCCE
Q ss_conf ---0566---------689878887298832189999688099899999857--98499-989987986
Q gi|254780970|r 653 ---LPIE---------IEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNK--NIPLR-YLGKVSGST 706 (737)
Q Consensus 653 ---L~~~---------~~~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~--gi~~~-~IG~Vt~~~ 706 (737)
T Consensus 252 E~~iPV~eeV~gaCE~LGldPl~-lANE--G~~v~~V~~E~A~~vLe~lk~hp~G~~A~YiIG~V~e~~ 317 (345)
T TIGR02124 252 EEKIPVKEEVKGACELLGLDPLY-LANE--GKLVLAVPPEAAEKVLEILKSHPLGKDAAYIIGEVVEKK 317 (345)
T ss_pred ECCCCCCHHHHHHHHHHCCCHHH-HHCC--CEEEEEECHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
T ss_conf 52478837899999861703254-2047--628998283779999999860776433215630147379