HHsearch alignment for GI: 254780970 and conserved domain: TIGR03267
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=100.00 E-value=0 Score=425.76 Aligned_cols=305 Identities=23% Similarity=0.302 Sum_probs=263.0
Q ss_pred HHCCCCCCCCCH---HH-HHHH-HHCCCCEEECCCCCEEEEEECCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 300110744588---99-9751-20697489933477368983698399999517-887776588887210558102257
Q gi|254780970|r 43 MWNEHCSYKSSK---KW-LRTL-PTTGKHVIQGPGENAGVVDIGGGDCVVFKMES-HNHPSYIEPYQGAATGVGGILRDI 116 (737)
Q Consensus 43 ~wSEHC~~k~~~---~~-l~~~-~~~~~~vi~~~~~~a~vi~~~~~~~~~~k~Et-HNhPs~i~P~~GAaTg~gG~iRDi 116 (737)
T Consensus 10 ~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~vvgpGdDAavi~i~~~~~~~~~~d~~~~~~~~~dPy~gG~~aVa~~v~DI 89 (323)
T TIGR03267 10 RSFEGVTRKHPIKDVVEILEPLDVTYEGNVIVDFGDDAAAIKIGGDDILLLAADGIWGKLLDADPWWAGYCAVLVNVNDI 89 (323)
T ss_pred HHCCCCHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 74878310059899999986433455887542479860699878985899997677887514697898999999998889
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCC
Q ss_conf 67787436877504578756863888998887458866543087211320355215676642211221121135543112
Q gi|254780970|r 117 FTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSK 196 (737)
Q Consensus 117 ~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~ 196 (737)
T Consensus 90 aamGA~Pla~ld~L~~~~pe------~~~~i~~Gi~~a~~~~gvpvVGG~t~~~~~~~~---v~v~vvGiv~~~~~i~~~ 160 (323)
T TIGR03267 90 AAMGGKPVGMVNVLSINDVD------VCREVLEGMREGAWKFGVPVVGGHTHPDTPYNA---LDVAIVGIAKEDCIIRSD 160 (323)
T ss_pred HHHCCCHHHHHHHHCCCCHH------HHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCE---EEEEEEEEECCCCEEECC
T ss_conf 98087618863022679878------999999999999987499776673456888770---589999987411145447
Q ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHH
Q ss_conf 25689779996576564441046666777286533344433267989998889998740113830110347752011122
Q gi|254780970|r 197 ARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSA 276 (737)
Q Consensus 197 ~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~ 276 (737)
T Consensus 161 ~a~~GD~ii~~~~l~g~~~~~------~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~lv~a~~DiS~gGL~~~l 228 (323)
T TIGR03267 161 TAKPGDLIIFAIDLDGRPYPS------FPLNWD------TTTMKSPDYLRAQMDAVVEIAERKLVKAGKDISNPGLIGTL 228 (323)
T ss_pred CCCCCCEEEEEECCCCCCCCC------CCCCCC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 899999999996467611645------534431------01346747778889989999986678766412647167799
Q ss_pred HHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCC
Q ss_conf 33201477528996202204667899989861788850899995467588999888709713112212104431000258
Q gi|254780970|r 277 IEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRG 356 (737)
Q Consensus 277 ~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g 356 (737)
T Consensus 229 ~em~~~s~~Ga~I~l~~iP~-~~~~~~~~~l~~~~~~~~l~tv~~~~~~~i~~~~~~~gi~~~vIG~Vt~~~~l~l~~~~ 307 (323)
T TIGR03267 229 GMLLEASRVGAEVDLESIPK-PEDVDMVTWLKMYPGSGFVLTADPENVREIVRVLEDAGLTASVIGEVIEDGKLYVSDGD 307 (323)
T ss_pred HHHHHHCCCCEEEEHHHCCC-CCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECC
T ss_conf 99986448837997531888-88999999998489983899986503999999999879988999999759829999899
Q ss_pred CC--CCCCCCCCCCC
Q ss_conf 64--43443210146
Q gi|254780970|r 357 EE--VANLPIKALSD 369 (737)
Q Consensus 357 ~~--v~dlp~~~L~~ 369 (737)
T Consensus 308 e~~v~~d~~~~~~~g 322 (323)
T TIGR03267 308 ESAVVFDFRKDRITG 322 (323)
T ss_pred CCEEEEECCCCCCCC
T ss_conf 018998877556568