HHsearch alignment for GI: 254780970 and conserved domain: TIGR03267
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=100.00 E-value=0 Score=382.03 Aligned_cols=295 Identities=22% Similarity=0.253 Sum_probs=239.1
Q ss_pred CHHHHHHHHHHCCCC------CCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHH
Q ss_conf 588999998507321------01035653112100011000013576314203777622797304532100001001135
Q gi|254780970|r 397 DCTKSLLKLLSSPNL------SSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTK 470 (737)
Q Consensus 397 d~~~~l~~vL~~pnV------~SK~~i~~qyD~~V~g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~ 470 (737)
T Consensus 1 ~~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~vvgpGdDAavi~i~~-~~~~~~~~d~~~~~~~~~dPy~gG~ 79 (323)
T TIGR03267 1 NLRELARELRSFEGVTRKHPIKDVVEILEPLDVTYEGNVIVDFGDDAAAIKIGG-DDILLLAADGIWGKLLDADPWWAGY 79 (323)
T ss_pred CHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEECC-CCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 978999999748783100598999999864334558875424798606998789-8589999767788751469789899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67897776410278510223221024566686213469999999985221028866544320011236866676311122
Q gi|254780970|r 471 QAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAG 550 (737)
Q Consensus 471 ~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~ 550 (737)
T Consensus 80 ~aVa~~v~DIaamGA~Pla~ld~L~~~~pe---~---~~~i~~Gi~~a~~~~gvpvVGG~t~~~~~------~~~v~v~v 147 (323)
T TIGR03267 80 CAVLVNVNDIAAMGGKPVGMVNVLSINDVD---V---CREVLEGMREGAWKFGVPVVGGHTHPDTP------YNALDVAI 147 (323)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCCHH---H---HHHHHHHHHHHHHHCCCCEECCCCCCCCC------CCEEEEEE
T ss_conf 999999888998087618863022679878---9---99999999999987499776673456888------77058999
Q ss_pred CCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 22333520233102143898075137766554326788886116789996479899999999999999959806994648
Q gi|254780970|r 551 VGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDIS 630 (737)
Q Consensus 551 vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiS 630 (737)
T Consensus 148 vGiv~~-~~~i~~~~a~~GD~ii~~~~l~g~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~l~~~~lv~a~~DiS 220 (323)
T TIGR03267 148 VGIAKE-DCIIRSDTAKPGDLIIFAIDLDGRPYPSFPL----N--WDTTTMKSPDYLRAQMDAVVEIAERKLVKAGKDIS 220 (323)
T ss_pred EEEECC-CCEEECCCCCCCCEEEEEECCCCCCCCCCCC----C--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 998741-1145447899999999996467611645534----4--31013467477788899899999866787664126
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCC---CCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC-E
Q ss_conf 657999999998458970899805666---898788872988321899996880998999998579849998998798-6
Q gi|254780970|r 631 TGGLIITLAEMTISSAKGMDIILPIEI---EKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS-T 706 (737)
Q Consensus 631 dGGL~~aL~EMa~as~~G~~I~L~~~~---~~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~-~ 706 (737)
T Consensus 221 ~gGL~~~l~em~~~s~~Ga~I~l~~iP~~~~~~~~~~l~~~~~~~~l~tv~~~~~~~i~~~~~~~gi~~~vIG~Vt~~~~ 300 (323)
T TIGR03267 221 NPGLIGTLGMLLEASRVGAEVDLESIPKPEDVDMVTWLKMYPGSGFVLTADPENVREIVRVLEDAGLTASVIGEVIEDGK 300 (323)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEHHHCCCCCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCE
T ss_conf 47167799999864488379975318888899999999848998389998650399999999987998899999975982
Q ss_pred EEEEC
Q ss_conf 89807
Q gi|254780970|r 707 LSIHN 711 (737)
Q Consensus 707 l~i~~ 711 (737)
T Consensus 301 l~l~~ 305 (323)
T TIGR03267 301 LYVSD 305 (323)
T ss_pred EEEEE
T ss_conf 99998