HHsearch alignment for GI: 254780970 and conserved domain: cd00396

>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=100.00  E-value=8.5e-39  Score=284.94  Aligned_cols=215  Identities=29%  Similarity=0.474  Sum_probs=131.1

Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99995178877765888872105581022576778743687750457875686388899888745886654308721132
Q gi|254780970|r   86 VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGG  165 (737)
Q Consensus        86 ~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G  165 (737)
T Consensus         2 l~~~tDg~~~~~~~dP~~~G~~av~~~~sDi~a~Ga~P~~~l~~l~~~~~~~~---~~l~~i~~Gi~~~~~~~gv~ivGG   78 (222)
T cd00396           2 LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEV---DILEDVVDGVAEACNQLGVPIVGG   78 (222)
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             59996688994001888899999999988898759985999998883489987---899999999999999969826813


Q ss_pred             EEEEECCCCC-CCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             0355215676-642211221121135543112256897799965765644410466667772865333444332679899
Q gi|254780970|r  166 EVEFLPCYNN-NIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFT  244 (737)
Q Consensus       166 ~~~~~~~y~~-~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~  244 (737)
T Consensus        79 ~t~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~a~~GD~ii~~g------------------------------------  122 (222)
T cd00396          79 HTSVSPGTMGHKLSLAVFAIGVVEKDRVIDSSGARPGDVLILTG------------------------------------  122 (222)
T ss_pred             EEEECCCCCCCCEEEEEEEEEEECCCCEECCCCCCCCCEEEEEC------------------------------------
T ss_conf             58975888754617999999875565400656799999999989------------------------------------


Q ss_pred             HHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCC-----CCCHHHHHHCCCCCEEEEEE
Q ss_conf             9888999874011383011034775201112233201477528996202204667-----89998986178885089999
Q gi|254780970|r  245 GKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE-----GMTAYEMMLSESQERMLMIL  319 (737)
Q Consensus       245 ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~-----~l~~~ei~~sEsQeR~~~~v  319 (737)
T Consensus       123 ----~~~~~~l~~~~~v~a~~DiT~GGL~~~l~e~a~~s~~g~~i~~~~ip~~~~~~~~~~~~~~~~~~~~~~g~lli~v  198 (222)
T cd00396         123 ----VDAVLELVAAGDVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIEEALLFNSSGGLLIAV  198 (222)
T ss_pred             ----HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEHHHCCCCHHHHHHHHHCHHHHHHHCCCCEEEEEE
T ss_conf             ----4999987645885699867987499999999987697699977657988789988550359997522548699999


Q ss_pred             ECCCHHHHHHHHHHHCCEEECCCC
Q ss_conf             546758899988870971311221
Q gi|254780970|r  320 NPEKQHKAQEILNKWGLHFSIIGI  343 (737)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~~~~iG~  343 (737)
T Consensus       199 ~~e~~~~v~~~l~~~gi~a~vIGr  222 (222)
T cd00396         199 PAEEADAVLLLLNGNGIDAAVIGR  222 (222)
T ss_pred             CHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             789999999999966999797192