HHsearch alignment for GI: 254780970 and conserved domain: cd02204

>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00  E-value=0  Score=346.70  Aligned_cols=257  Identities=25%  Similarity=0.389  Sum_probs=223.4

Q ss_pred             CEEEEEEC--CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC-HHHHHHHHHHH
Q ss_conf             73689836--9839999951788777658888721055810225767787436877504578756863-88899888745
Q gi|254780970|r   74 NAGVVDIG--GGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPK-TKHLLSGVVAG  150 (737)
Q Consensus        74 ~a~vi~~~--~~~~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~-~~~~~~~~~~G  150 (737)
T Consensus         1 da~V~~~~~~~~~g~a~s~g~~p~~~~~dP~~ga~~aV~Ea~rni~~~Ga~p~ai~~~lnf~~p~~~~~~~~~l~~av~g   80 (264)
T cd02204           1 DAAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLAITDCLNFGNPEKPEGEMGQLVEAVLG   80 (264)
T ss_pred             CCEEEEECCCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCHHHHEECHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             95599863899859999747999614348999999999999988752698389951001102877785078889999999


Q ss_pred             HHHHHHHCCCCCCCCEEEEECCCCC---CCCCCEEEECCCCH-HHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             8866543087211320355215676---64221122112113-5543112256897799965765644410466667772
Q gi|254780970|r  151 IAGYSNSFGVPTVGGEVEFLPCYNN---NIIVNTFAAGIAKT-NAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEF  226 (737)
Q Consensus       151 ~~~ygN~~G~P~v~G~~~~~~~y~~---~~~v~~~~~Gi~~~-~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~  226 (737)
T Consensus        81 ~~~~~~~lgiP~v~G~~Sl~n~~~~~~ippTlvi~~vg~v~~~~~~~t~~~k~~g~~i~lig~~~~~~--ggs~~~~~~~  158 (264)
T cd02204          81 LGDACRALGTPVIGGKDSLYNETEGVAIPPTLVIGAVGVVDDVRKIVTLDFKKEGDLLYLIGETKDEL--GGSEYALAYH  158 (264)
T ss_pred             HHHHHHHCCCCEECCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEHHHHCCCCCEEEEECCCCCCC--CCCHHHHHHC
T ss_conf             99999970996203446651466786678852899997325730024154347998799957884557--8779999970


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHH
Q ss_conf             86533344433267989998889998740113830110347752011122332014775289962022046678999898
Q gi|254780970|r  227 GENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEM  306 (737)
Q Consensus       227 ~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei  306 (737)
T Consensus       159 ~~~----~~~~~~~d~~~~k~~~~~i~~l~~~~li~s~hDvS~GGL~~al~EMa~~~~~G~~i~l~~~~------~~~~~  228 (264)
T cd02204         159 GLG----GGAPPLVDLEREKALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDD------AEDEL  228 (264)
T ss_pred             CCC----CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCC------CHHHH
T ss_conf             878----89856589999999999998998659612787678781999999998428965999838999------82575


Q ss_pred             HHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCE
Q ss_conf             61788850899995467588999888709713112212
Q gi|254780970|r  307 MLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT  344 (737)
Q Consensus       307 ~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~v  344 (737)
T Consensus       229 LFsEs~gr~vv~v~~~~~~~~~--~~~~~v~~~~IG~v  264 (264)
T cd02204         229 LFSESLGRVLVEVKPENEEVFE--AEEAGVPATVIGTV  264 (264)
T ss_pred             EECCCCCEEEEEECCCHHHHHH--HHHCCCCEEEEEEC
T ss_conf             0378888699998724299999--98889996998769