HHsearch alignment for GI: 254780970 and conserved domain: cd06061
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=3.2e-34 Score=253.55 Aligned_cols=256 Identities=23% Similarity=0.296 Sum_probs=187.1
Q ss_pred CCCCCC--CCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHH
Q ss_conf 100001--357631420377762279730453210000100113567897776410278510223221024566686213
Q gi|254780970|r 428 NSIQLP--GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIM 505 (737)
Q Consensus 428 ~tv~~P--g~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~ 505 (737)
T Consensus 24 ~v~vg~~~gdDaavi~~~~---~~lvvttD--p~--~~~~~~~G~~ava~~~sDI~amGa~P~~~l~~l~~p~~~~~~-- 94 (298)
T cd06061 24 EVLVGPGGGEDAAVVDFGG---KVLVVSTD--PI--TGAGKDAGWLAVHIAANDIATSGARPRWLLVTLLLPPGTDEE-- 94 (298)
T ss_pred CEEECCCCCCEEEEEEECC---CEEEEECC--CC--CCCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHEECCCCCCHH--
T ss_conf 8877899985259998689---87999848--83--058136999999987999998599828876121188999999--
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHH
Q ss_conf 46999999998522102886654432001123686667631112222333520233102143898075137766554326
Q gi|254780970|r 506 GQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCS 585 (737)
Q Consensus 506 ~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS 585 (737)
T Consensus 95 -~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~~----~~~i~~t~~G~~~~-~~~~~~~~ak~GD~Iiltg~~G~~-~~~ 167 (298)
T cd06061 95 -ELKAIMREINEAAKELGVSIVGGHTEVTPGVT----RPIISVTAIGKGEK-DKLVTPSGAKPGDDIVMTKGAGIE-GTA 167 (298)
T ss_pred -HHHHHHHHHHHHHHHHCCCEECCEEEECCCCC----CCEEEEEEEEEECC-CCEECCCCCCCCCEEEEECCCCHH-HHH
T ss_conf -99999999999999839956443158647877----76799999999568-866306779999999998984076-899
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHH---HH--HHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC--
Q ss_conf 7888861167899964798999999999---99--9999598069946486579999999984589708998056668--
Q gi|254780970|r 586 MYSLECASSNIGPPPKVDCHLEKNHGFF---VL--SMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIE-- 658 (737)
Q Consensus 586 ~~~~~~~~~~~g~~p~~d~~~~k~~~~~---v~--~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~-- 658 (737)
T Consensus 168 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~Dis~gGL~~~L~e~~~~s~vg~~I~~~~iPi~~ 247 (298)
T cd06061 168 ILANDFEEELKKRLSEEELREAAKLFYKISVVKEALIAAEAGVTAMHDATEGGILGALWEVAEASGVGLRIEKDKIPIRQ 247 (298)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 99987066552346758899878754022239999975105755987167552777899999746974999775468887
Q ss_pred ----------CCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf ----------98788872988321899996880998999998579849998998
Q gi|254780970|r 659 ----------KDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV 702 (737)
Q Consensus 659 ----------~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~V 702 (737)
T Consensus 248 ~~~~~~~~~~~dp~~-~~--~~G~ll~~v~~~~~~~v~~~l~~~g~~a~vIGeV 298 (298)
T cd06061 248 ETKEICEALGIDPLR-LI--SSGTLLITVPPEKGDELVDALEEAGIPASVIGKI 298 (298)
T ss_pred HHHHHHHHCCCCHHH-HH--HCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 999999974978888-97--0887999998899999999999649796999869