Query         gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 737
No_of_seqs    308 out of 2682
Neff          6.7 
Searched_HMMs 39220
Date          Mon May 30 04:29:20 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780970.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01736 FGAM_synth_II phosph 100.0       0       0 1965.0  47.3  717   16-732     1-763 (763)
  2 PRK01213 phosphoribosylformylg 100.0       0       0 1773.1  60.5  728    5-734     5-736 (736)
  3 COG0046 PurL Phosphoribosylfor 100.0       0       0 1685.4  54.9  715    9-726    17-743 (743)
  4 PRK05297 phosphoribosylformylg 100.0       0       0 1436.0  54.0  718    5-730   168-990 (1294)
  5 TIGR01735 FGAM_synt phosphorib 100.0       0       0 1378.4  38.0  719    5-727   183-1076(1401)
  6 KOG1907 consensus              100.0       0       0 1118.3  40.2  722    5-729   184-1011(1320)
  7 TIGR01857 FGAM-synthase phosph 100.0       0       0 1094.4  23.3  697    4-733   178-970 (1279)
  8 cd02203 PurL_repeat1 PurL subu 100.0       0       0  851.6  20.2  304   36-362     1-313 (313)
  9 cd02204 PurL_repeat2 PurL subu 100.0       0       0  487.9  23.7  263  436-702     1-264 (264)
 10 TIGR01739 tegu_FGAM_synt herpe 100.0       0       0  457.2  35.9  593  119-732   216-978 (1313)
 11 cd02193 PurL Formylglycinamide 100.0       0       0  468.8  15.6  259   84-344     1-272 (272)
 12 cd02193 PurL Formylglycinamide 100.0       0       0  432.3  21.4  251  449-701     2-271 (272)
 13 TIGR03267 methan_mark_2 putati 100.0       0       0  425.8  15.5  305   43-369    10-322 (323)
 14 TIGR03267 methan_mark_2 putati 100.0       0       0  382.0  23.5  295  397-711     1-305 (323)
 15 TIGR01736 FGAM_synth_II phosph 100.0       0       0  375.2  19.9  305   53-365   417-749 (763)
 16 cd02204 PurL_repeat2 PurL subu 100.0       0       0  346.7  15.2  257   74-344     1-264 (264)
 17 cd02192 PurM-like3 AIR synthas 100.0 2.8E-45       0  329.8  12.7  265   55-343    18-283 (283)
 18 PRK01213 phosphoribosylformylg 100.0 4.8E-44       0  320.9  16.3  289   64-367   429-722 (736)
 19 cd02203 PurL_repeat1 PurL subu 100.0 1.4E-42       0  310.8  16.6  260  448-711    26-305 (313)
 20 cd06061 PurM-like1 AIR synthas 100.0 2.8E-40   7E-45  295.0  13.1  274   54-344    12-298 (298)
 21 cd02192 PurM-like3 AIR synthas 100.0 2.9E-37 7.5E-42  274.4  18.4  252  427-701    28-283 (283)
 22 COG0046 PurL Phosphoribosylfor 100.0 8.9E-37 2.3E-41  271.1  20.1  302  414-722    63-381 (743)
 23 cd00396 PurM-like AIR (aminoim 100.0 8.5E-39 2.2E-43  284.9   8.5  215   86-343     2-222 (222)
 24 PRK05731 thiamine monophosphat 100.0 6.4E-37 1.6E-41  272.1  15.2  277   64-359    18-310 (320)
 25 cd00396 PurM-like AIR (aminoim 100.0 1.5E-35 3.8E-40  262.7  17.4  213  449-701     1-222 (222)
 26 cd02197 HypE HypE (Hydrogenase 100.0 4.5E-35 1.1E-39  259.4  16.7  271   53-344     6-293 (293)
 27 cd02194 ThiL ThiL (Thiamine-mo 100.0 3.1E-35 7.9E-40  260.5  15.1  261   63-345    15-291 (291)
 28 cd06061 PurM-like1 AIR synthas 100.0 3.2E-34 8.2E-39  253.6  20.0  256  428-702    24-298 (298)
 29 cd02195 SelD Selenophosphate s 100.0 3.3E-33 8.5E-38  246.6  20.0  246  430-702    35-287 (287)
 30 cd02195 SelD Selenophosphate s 100.0 1.5E-34 3.7E-39  255.9  11.6  275   44-344     6-287 (287)
 31 PRK05731 thiamine monophosphat 100.0 1.2E-32   3E-37  242.8  20.4  264  425-709    17-303 (320)
 32 cd02691 PurM-like2 AIR synthas 100.0 3.8E-33 9.6E-38  246.2  17.0  287   56-358    20-317 (346)
 33 cd02194 ThiL ThiL (Thiamine-mo 100.0 2.1E-31 5.4E-36  234.2  20.1  252  428-703    18-291 (291)
 34 COG0309 HypE Hydrogenase matur 100.0 2.7E-31   7E-36  233.5  17.4  280   66-365    32-332 (339)
 35 cd02197 HypE HypE (Hydrogenase 100.0   1E-30 2.5E-35  229.6  19.5  257  427-702    19-293 (293)
 36 TIGR01379 thiL thiamine-monoph 100.0 1.4E-29 3.6E-34  221.7  20.1  261  424-705    15-311 (336)
 37 TIGR02124 hypE hydrogenase exp 100.0 9.7E-31 2.5E-35  229.7  13.8  290   53-365    13-338 (345)
 38 PRK00943 selenophosphate synth 100.0 1.6E-29 4.2E-34  221.3  19.0  252  434-705    49-337 (347)
 39 COG2144 Selenophosphate synthe 100.0 6.8E-29 1.7E-33  217.0  18.2  270  419-712    27-302 (324)
 40 COG2144 Selenophosphate synthe 100.0 3.5E-29 8.9E-34  219.0  16.3  296   45-368    13-317 (324)
 41 TIGR02124 hypE hydrogenase exp 100.0 5.3E-27 1.4E-31  204.1  14.8  260  425-706    31-317 (345)
 42 cd02691 PurM-like2 AIR synthas  99.9   2E-26 5.1E-31  200.1  17.1  291  427-734    29-338 (346)
 43 PRK00943 selenophosphate synth  99.9 7.4E-27 1.9E-31  203.1  11.9  282   48-348    17-338 (347)
 44 COG0611 ThiL Thiamine monophos  99.9 3.7E-25 9.3E-30  191.5  18.8  262  416-703     8-292 (317)
 45 PRK05297 phosphoribosylformylg  99.9 9.3E-26 2.4E-30  195.5  15.6  285   70-368   674-981 (1294)
 46 pfam02769 AIRS_C AIR synthase   99.9 2.5E-25 6.3E-30  192.6  10.5  149  199-354     1-149 (150)
 47 COG0309 HypE Hydrogenase matur  99.9 9.2E-25 2.3E-29  188.7  13.3  264  427-705    31-311 (339)
 48 TIGR01379 thiL thiamine-monoph  99.9 3.3E-24 8.4E-29  184.9  12.6  282   61-359    15-325 (336)
 49 COG0611 ThiL Thiamine monophos  99.9   2E-20 5.1E-25  159.0  15.3  271   64-358    18-305 (317)
 50 cd02196 PurM PurM (Aminoimidaz  99.9 4.3E-20 1.1E-24  156.7  15.8  222  113-344    54-296 (297)
 51 pfam02769 AIRS_C AIR synthase   99.9 2.7E-20 6.8E-25  158.1  14.5  138  567-706     1-143 (150)
 52 cd02196 PurM PurM (Aminoimidaz  99.8   1E-18 2.6E-23  147.3  17.1  257  434-703     4-297 (297)
 53 TIGR00476 selD selenide, water  99.8 4.8E-19 1.2E-23  149.5  14.6  252  434-702    57-371 (372)
 54 PRK05385 phosphoribosylaminoim  99.8 1.7E-17 4.5E-22  138.8  17.2  265   63-349    30-335 (338)
 55 TIGR01735 FGAM_synt phosphorib  99.8 5.7E-18 1.5E-22  142.1  10.7  385  290-712   171-609 (1401)
 56 TIGR00878 purM phosphoribosylf  99.8 4.5E-18 1.2E-22  142.8   9.9  247  435-704    43-337 (338)
 57 TIGR00878 purM phosphoribosylf  99.8 1.6E-16   4E-21  132.3  17.5  261   61-347    31-338 (338)
 58 COG1973 HypE Hydrogenase matur  99.7 2.6E-17 6.5E-22  137.7  11.1  265   69-359   108-394 (449)
 59 PRK05385 phosphoribosylaminoim  99.7 2.4E-16 6.1E-21  131.0  15.5  260  433-705    38-333 (338)
 60 COG0709 SelD Selenophosphate s  99.7   1E-16 2.6E-21  133.6  12.1  249  433-705    48-338 (346)
 61 TIGR01739 tegu_FGAM_synt herpe  99.7 1.7E-15 4.3E-20  125.2  17.0  280   67-369   655-968 (1313)
 62 COG0150 PurM Phosphoribosylami  99.6 4.5E-14 1.1E-18  115.5  16.9  260  433-705    39-335 (345)
 63 COG0150 PurM Phosphoribosylami  99.6 1.9E-14 4.7E-19  118.1  11.5  269   62-349    30-337 (345)
 64 COG1973 HypE Hydrogenase matur  99.6   6E-14 1.5E-18  114.6  12.4  256  430-705   105-381 (449)
 65 COG0709 SelD Selenophosphate s  99.6 3.4E-13 8.6E-18  109.5  14.8  276   47-348    16-339 (346)
 66 KOG1907 consensus               99.5 1.8E-13 4.7E-18  111.3  13.2  163  199-369   836-1004(1320)
 67 TIGR00476 selD selenide, water  99.5 3.1E-13 7.8E-18  109.7  10.2  269   64-344    41-371 (372)
 68 KOG0237 consensus               99.4 2.5E-12 6.3E-17  103.5  12.4  263  431-704   464-769 (788)
 69 pfam00586 AIRS AIR synthase re  99.4 1.5E-13 3.8E-18  111.9   3.0   92  434-530     1-94  (95)
 70 KOG0237 consensus               99.4 1.9E-12 4.8E-17  104.3   8.2  228  113-349   523-772 (788)
 71 pfam00586 AIRS AIR synthase re  99.4 1.1E-12 2.7E-17  106.1   6.1   92   72-167     1-95  (95)
 72 KOG3939 consensus               99.3 2.8E-10 7.2E-15   89.4  15.8  252  436-705     2-293 (312)
 73 TIGR01857 FGAM-synthase phosph  99.1 3.9E-11 9.9E-16   95.3   2.6  347  320-709   193-598 (1279)
 74 KOG3939 consensus               96.9   0.019 4.8E-07   35.8  10.0  258   74-350     2-296 (312)
 75 PRK07226 fructose-bisphosphate  84.6    0.78   2E-05   24.7   2.5   49  470-528    96-144 (266)
 76 PRK08227 aldolase; Validated    83.7    0.95 2.4E-05   24.1   2.6   70  448-528   102-172 (291)
 77 TIGR02033 D-hydantoinase dihyd  82.3    0.94 2.4E-05   24.1   2.2   35  432-468   397-431 (466)
 78 TIGR00608 radc DNA repair prot  77.7    0.83 2.1E-05   24.5   0.7   25  273-299    79-103 (223)
 79 TIGR01950 SoxR redox-sensitive  74.4     5.1 0.00013   19.1   4.0   44    9-52     51-96  (142)
 80 cd00958 DhnA Class I fructose-  71.2     4.5 0.00011   19.5   3.1   56  464-529    73-128 (235)
 81 TIGR02479 FliA_WhiG RNA polyme  71.0     4.4 0.00011   19.6   3.0   23  680-702   181-203 (227)
 82 TIGR02634 xylF D-xylose ABC tr  70.7     7.2 0.00018   18.1   5.2  129  141-279    65-206 (307)
 83 TIGR01034 metK S-adenosylmethi  68.9     7.2 0.00018   18.1   3.7  101  392-497   201-313 (393)
 84 TIGR02103 pullul_strch alpha-1  68.0     6.3 0.00016   18.5   3.3   48  486-538   390-452 (945)
 85 COG4008 Predicted metal-bindin  65.3     7.4 0.00019   18.0   3.2   10  482-491    11-20  (153)
 86 PRK06108 aspartate aminotransf  65.3     6.5 0.00017   18.4   2.9   32  498-529   166-197 (382)
 87 TIGR02356 adenyl_thiF thiazole  62.1     4.7 0.00012   19.3   1.7   43  267-312    27-71  (210)
 88 PRK08175 aminotransferase; Val  61.9     6.3 0.00016   18.5   2.3   31  498-529   172-203 (395)
 89 PRK07878 molybdopterin biosynt  61.6     8.1 0.00021   17.7   2.8   44  267-311    48-91  (392)
 90 PRK07367 consensus              61.4     3.5   9E-05   20.2   1.0   32  498-529   169-200 (385)
 91 TIGR01949 AroFGH_arch predicte  58.5     4.9 0.00012   19.2   1.3   51  479-538    98-148 (259)
 92 pfam07141 Phage_term_sma Putat  58.4     6.4 0.00016   18.4   1.9   30   23-57     23-52  (174)
 93 PRK07550 hypothetical protein;  56.6     3.5   9E-05   20.2   0.3   37  498-536   172-208 (387)
 94 PRK07568 aspartate aminotransf  56.5     4.1  0.0001   19.8   0.6   94  430-529   108-201 (396)
 95 pfam04539 Sigma70_r3 Sigma-70   56.1      10 0.00026   17.1   2.6   21   22-42     11-31  (78)
 96 PRK07212 consensus              55.5     6.5 0.00016   18.4   1.5   92  430-530   111-202 (378)
 97 TIGR02885 spore_sigF RNA polym  55.1      10 0.00026   17.0   2.5   22  500-523    36-57  (231)
 98 TIGR01833 HMG-CoA-S_euk hydrox  54.1      11 0.00028   16.8   2.5   69  285-361     8-87  (461)
 99 cd01459 vWA_copine_like VWA Co  54.0      11 0.00028   16.9   2.4   18  464-481   109-126 (254)
100 PRK06852 aldolase; Validated    53.9     7.2 0.00018   18.1   1.5   60  463-528   111-172 (303)
101 PRK09148 aminotransferase; Val  53.7     6.2 0.00016   18.5   1.2   19  511-529   187-205 (406)
102 PRK05957 aspartate aminotransf  53.4      11 0.00029   16.7   2.5   32  498-529   168-199 (389)
103 TIGR02187 GlrX_arch Glutaredox  53.2     4.1  0.0001   19.8   0.2   65   16-80      1-73  (237)
104 pfam04227 Indigoidine_A Indigo  51.9     8.7 0.00022   17.5   1.7   15  323-337   156-170 (293)
105 COG5616 Predicted integral mem  51.6      14 0.00035   16.1   2.7  121  104-231     6-129 (152)
106 TIGR02978 phageshock_pspC phag  51.4     4.7 0.00012   19.3   0.3   19  143-164    12-30  (128)
107 PRK06056 consensus              51.2     8.1 0.00021   17.7   1.4   32  498-529   176-207 (402)
108 PRK12399 tagatose 1,6-diphosph  50.7      16 0.00041   15.7   3.1   82  446-531    81-163 (324)
109 COG2860 Predicted membrane pro  50.6     3.3 8.4E-05   20.4  -0.6   23  104-127    39-62  (209)
110 PRK05973 replicative DNA helic  50.4      16 0.00041   15.7   2.8   22  197-222    60-81  (237)
111 pfam07302 AroM AroM protein. T  50.3      11 0.00028   16.8   2.0   61  455-530   149-209 (221)
112 PRK07778 consensus              49.0     6.3 0.00016   18.5   0.6   32  498-529   170-201 (386)
113 COG1191 FliA DNA-directed RNA   49.0      17 0.00043   15.5   3.3   13  511-523    58-70  (247)
114 pfam04002 DUF2466 Protein of u  48.3       6 0.00015   18.6   0.4   56  460-526    48-103 (123)
115 COG1830 FbaB DhnA-type fructos  48.1      17 0.00044   15.5   3.4   42  481-528   107-148 (265)
116 cd01121 Sms Sms (bacterial rad  48.0      12 0.00029   16.7   1.8   29  322-350   187-215 (372)
117 TIGR00416 sms DNA repair prote  47.9       8  0.0002   17.8   1.0   47  322-372   225-273 (481)
118 TIGR01924 rsbW_low_gc anti-sig  47.7     6.5 0.00017   18.4   0.5   38  437-482    20-57  (161)
119 TIGR00853 pts-lac PTS system,   46.5      16  0.0004   15.8   2.3   73  257-341    46-124 (142)
120 PRK05597 molybdopterin biosynt  46.1      19 0.00047   15.2   3.0   21  267-287    34-54  (355)
121 TIGR03277 methan_mark_9 putati  45.9      19 0.00048   15.2   3.1   25    4-28     27-51  (109)
122 COG1010 CobJ Precorrin-3B meth  45.7      19 0.00048   15.2   4.8  112  261-373    77-230 (249)
123 cd05565 PTS_IIB_lactose PTS_II  45.4      19 0.00049   15.2   3.7   60  272-341    16-78  (99)
124 PRK00024 radC DNA repair prote  45.1     6.8 0.00017   18.2   0.3   54  462-526   151-204 (224)
125 pfam11212 DUF2999 Protein of u  45.1      19 0.00049   15.1   3.0   27    6-32      3-29  (82)
126 cd00757 ThiF_MoeB_HesA_family   44.0      20 0.00051   15.0   5.1   22  267-288    27-48  (228)
127 PRK08443 consensus              43.4      10 0.00026   17.0   1.0   33  497-529   169-201 (388)
128 PRK08328 hypothetical protein;  43.0      14 0.00037   16.0   1.7   44  267-311    33-76  (230)
129 COG4915 XpaC 5-bromo-4-chloroi  42.9      20 0.00051   15.0   2.4   14  718-731   170-183 (204)
130 PRK07324 transaminase; Validat  42.6       6 0.00015   18.6  -0.3   95  429-530    99-193 (373)
131 PRK11823 DNA repair protein Ra  41.4      16 0.00041   15.7   1.7   35  309-350   188-222 (454)
132 TIGR02171 Fb_sc_TIGR02171 Fibr  41.0      14 0.00037   16.0   1.4  180   30-229   162-402 (982)
133 PRK09276 aspartate aminotransf  40.4      15 0.00038   15.9   1.4   32  498-529   174-205 (385)
134 PRK10481 hypothetical protein;  39.9      20 0.00051   15.0   2.0   59  457-530   154-212 (224)
135 PRK08363 alanine aminotransfer  39.9      12  0.0003   16.6   0.8   32  498-529   174-205 (398)
136 COG2003 RadC DNA repair protei  39.8      10 0.00027   17.0   0.5   53  463-526   152-204 (224)
137 PRK13805 bifunctional acetalde  39.2      24  0.0006   14.5   2.5   20  314-333   349-368 (862)
138 cd01492 Aos1_SUMO Ubiquitin ac  38.7      23 0.00058   14.6   2.1   44  267-311    27-70  (197)
139 cd02430 PTH2 Peptidyl-tRNA hyd  38.7      24 0.00061   14.5   3.0   38  304-341    41-79  (115)
140 PRK04250 dihydroorotase; Provi  38.5      24 0.00062   14.5   4.2   13   76-88     19-31  (408)
141 PTZ00079 NADP-specific glutama  38.4      24 0.00062   14.5   6.4   83   12-105    20-114 (469)
142 PRK09517 multifunctional thiam  38.2      24 0.00062   14.4   2.8   38  314-351   278-316 (738)
143 pfam10112 Halogen_Hydrol 5-bro  38.2      23  0.0006   14.6   2.1   20  715-734   167-186 (199)
144 PRK07777 aminotransferase; Val  37.3     9.8 0.00025   17.2   0.1   47   98-152     5-51  (386)
145 TIGR00313 cobQ cobyric acid sy  37.2      25 0.00064   14.3   3.6  113  181-345    59-177 (502)
146 PRK07683 aminotransferase A; V  36.4      12 0.00032   16.5   0.5   35  495-529   166-200 (387)
147 PRK05690 molybdopterin biosynt  36.4      19 0.00048   15.2   1.4   60  267-335    38-99  (245)
148 TIGR02719 repress_PhaQ poly-be  36.1      19 0.00048   15.2   1.4   31  609-639    59-89  (138)
149 KOG1327 consensus               36.1      16 0.00041   15.7   1.0   44  461-504   313-368 (529)
150 cd01122 GP4d_helicase GP4d_hel  35.9      26 0.00067   14.2   3.0   25  505-529   163-187 (271)
151 TIGR02326 transamin_PhnW 2-ami  35.3      27 0.00069   14.1   4.0  111  604-725   246-357 (366)
152 COG4721 ABC-type cobalt transp  35.0      16 0.00041   15.7   0.9   57   93-163    37-95  (192)
153 pfam02244 Propep_M14 Carboxype  34.5      28 0.00071   14.1   2.0   25  674-698    38-62  (75)
154 PRK12475 thiamine/molybdopteri  34.4      22 0.00056   14.7   1.5   22  267-288    30-51  (337)
155 TIGR03538 DapC_gpp succinyldia  34.3      14 0.00037   16.0   0.5   32  498-529   174-205 (394)
156 PRK07682 hypothetical protein;  33.6      13 0.00034   16.3   0.3   38  113-151     9-46  (378)
157 PRK08762 molybdopterin biosynt  33.4      21 0.00054   14.9   1.3   45  267-312   144-188 (379)
158 PRK06507 consensus              33.1      25 0.00065   14.3   1.6   32  498-529   172-204 (400)
159 PRK10664 transcriptional regul  32.9      29 0.00075   13.9   3.5   24    1-24      1-24  (90)
160 PRK07681 aspartate aminotransf  32.7      16 0.00041   15.7   0.6   25  672-696   365-389 (399)
161 PRK07688 thiamine/molybdopteri  32.6      25 0.00064   14.3   1.6   21  267-287    30-50  (339)
162 PRK05764 aspartate aminotransf  32.4      15 0.00039   15.8   0.4   32  498-529   172-203 (389)
163 TIGR00366 TIGR00366 conserved   32.1      15 0.00039   15.9   0.4   27  394-422   267-293 (463)
164 PRK06207 aspartate aminotransf  32.1      21 0.00053   14.9   1.1   32  498-529   187-218 (406)
165 PRK05463 hypothetical protein;  31.8      31 0.00078   13.8   2.3   53  316-375    39-91  (264)
166 TIGR02662 dinitro_DRAG ADP-rib  31.6      15 0.00037   16.0   0.2   20  413-433    98-117 (295)
167 pfam06032 DUF917 Protein of un  31.5      22 0.00056   14.7   1.1   55  240-299    22-76  (352)
168 TIGR01466 cobJ_cbiH precorrin-  31.4      31 0.00079   13.7   5.4  179  183-374     3-236 (254)
169 PRK06107 aspartate aminotransf  31.4      22 0.00055   14.8   1.1   18  512-529   188-206 (402)
170 PRK06348 aspartate aminotransf  31.2      15 0.00038   15.9   0.2   33  497-529   169-201 (383)
171 PRK04914 ATP-dependent helicas  31.2      16 0.00041   15.7   0.4   43  300-342   186-229 (955)
172 pfam01988 VIT1 VIT family. Thi  31.1      32  0.0008   13.7   3.4   21  323-343    81-101 (210)
173 PRK07337 aminotransferase; Val  31.1      13 0.00034   16.2  -0.1   17  512-528   185-201 (388)
174 TIGR02355 moeB molybdopterin s  31.0      26 0.00066   14.2   1.4   43  327-369   131-174 (240)
175 TIGR00987 himA integration hos  30.7      32 0.00082   13.6   3.4   15    9-23     10-24  (96)
176 PRK08362 consensus              30.6      15 0.00038   15.9   0.1   16  321-336   179-194 (389)
177 cd01487 E1_ThiF_like E1_ThiF_l  29.8      33 0.00084   13.5   2.0   59  267-335     5-65  (174)
178 TIGR01304 IMP_DH_rel_2 IMP deh  29.6      22 0.00056   14.7   0.9   19  514-532   181-199 (376)
179 PRK04322 peptidyl-tRNA hydrola  29.4      34 0.00086   13.5   3.2   46  304-352    42-88  (116)
180 PRK10753 transcriptional regul  28.9      34 0.00087   13.4   3.4   20    3-22      3-22  (90)
181 PRK11706 TDP-4-oxo-6-deoxy-D-g  28.9      13 0.00033   16.3  -0.5   37   15-51      8-47  (375)
182 cd04914 ACT_AKi-DapG-BS_1 ACT   28.9      34 0.00087   13.4   3.4   32  667-698    34-65  (67)
183 PRK08361 aspartate aminotransf  28.9      16 0.00041   15.7   0.1   20  510-529   185-204 (390)
184 PRK08912 hypothetical protein;  28.8      15 0.00038   15.9  -0.1   32  498-529   167-198 (387)
185 pfam01726 LexA_DNA_bind LexA D  28.6      35 0.00088   13.4   3.8   37   21-64     12-54  (65)
186 PRK05794 consensus              28.5      20 0.00052   15.0   0.5   32  498-529   171-202 (397)
187 TIGR02393 RpoD_Cterm RNA polym  27.7      36 0.00091   13.3   2.2   21  505-526    59-80  (240)
188 PRK07366 succinyldiaminopimela  27.7      16 0.00041   15.7  -0.2   32  498-529   173-204 (388)
189 cd02962 TMX2 TMX2 family; comp  27.6     4.1 0.00011   19.7  -3.2   40  322-363    86-125 (152)
190 PRK05942 aspartate aminotransf  27.4      19 0.00049   15.2   0.2   32  498-529   178-209 (394)
191 PRK07411 hypothetical protein;  27.4      36 0.00093   13.3   2.7   20  267-286    44-63  (390)
192 cd00616 AHBA_syn 3-amino-5-hyd  27.3      12 0.00031   16.5  -0.8   26  672-697   269-297 (352)
193 cd01316 CAD_DHOase The eukaryo  27.3      36 0.00093   13.2   2.9   16  510-525   265-281 (344)
194 pfam01791 DeoC DeoC/LacD famil  27.2      37 0.00093   13.2   2.8   50  477-529    80-129 (231)
195 COG4840 Uncharacterized protei  27.1      37 0.00094   13.2   2.9   18   13-30     51-68  (71)
196 COG0436 Aspartate/tyrosine/aro  26.9      14 0.00036   16.1  -0.5   93  430-529   109-202 (393)
197 PRK08960 hypothetical protein;  26.8      25 0.00063   14.4   0.7   32  498-529   173-204 (387)
198 COG2759 MIS1 Formyltetrahydrof  26.7      37 0.00095   13.2   2.2   46    2-68      9-56  (554)
199 cd01899 Ygr210 Ygr210 subfamil  26.7      14 0.00036   16.1  -0.6   16   89-104    22-38  (318)
200 PRK10578 hypothetical protein;  26.2     4.3 0.00011   19.6  -3.3   20  105-125    37-57  (207)
201 cd05383 SCP_CRISP SCP_CRISP: S  26.1      35  0.0009   13.3   1.4   22   34-55     30-51  (138)
202 pfam07002 Copine Copine. This   25.9      16  0.0004   15.8  -0.5   15  464-478    11-25  (145)
203 PRK07543 consensus              25.8      33 0.00084   13.6   1.2   19  130-148    36-54  (400)
204 PRK11032 hypothetical protein;  25.8      39 0.00099   13.1   1.7   17   16-32     43-59  (160)
205 PRK08644 thiamine biosynthesis  25.3      39   0.001   13.0   1.5   22  267-288    33-54  (209)
206 COG1066 Sms Predicted ATP-depe  24.8      40   0.001   12.9   1.8   29  322-350   197-225 (456)
207 PRK08068 transaminase; Reviewe  24.3      21 0.00053   14.9  -0.1   18  511-528   188-205 (389)
208 PRK12319 acetyl-CoA carboxylas  24.2      41  0.0011   12.9   2.0   29  495-528    75-103 (256)
209 smart00198 SCP SCP / Tpx-1 / A  24.2      38 0.00097   13.1   1.2   17   34-50     36-52  (144)
210 TIGR03600 phage_DnaB phage rep  24.1      42  0.0011   12.9   2.0   57  473-529   292-350 (421)
211 PRK08069 consensus              24.0      27 0.00068   14.2   0.4   15  321-335   182-196 (390)
212 pfam01041 DegT_DnrJ_EryC1 DegT  24.0      31 0.00078   13.8   0.7   36   16-51      3-41  (363)
213 cd02975 PfPDO_like_N Pyrococcu  24.0      16  0.0004   15.8  -0.7   50   16-67      3-54  (113)
214 cd02434 Nodulin-21_like_3 Nodu  23.9      42  0.0011   12.8   3.6   18  323-340    82-99  (225)
215 TIGR02980 SigBFG RNA polymeras  23.9      42  0.0011   12.8   2.3   26  617-642   130-158 (229)
216 pfam11198 DUF2857 Protein of u  23.9      42  0.0011   12.8   3.9   26  596-621   117-142 (181)
217 pfam03796 DnaB_C DnaB-like hel  23.9      42  0.0011   12.8   2.8   24  506-529   154-177 (186)
218 PRK07309 aromatic amino acid a  23.8      21 0.00053   14.9  -0.1   31  498-529   174-205 (390)
219 COG2344 AT-rich DNA-binding pr  23.6      42  0.0011   12.8   6.8   85  611-695    72-172 (211)
220 TIGR02374 nitri_red_nirB nitri  23.5      43  0.0011   12.8   1.5   14  567-580   711-724 (813)
221 PRK06749 replicative DNA helic  23.4      43  0.0011   12.8   3.5   57  473-529   285-346 (428)
222 PRK12414 putative aminotransfe  23.1      18 0.00046   15.4  -0.6   23  129-151    33-55  (384)
223 PRK06290 aspartate aminotransf  23.0      16 0.00041   15.7  -0.8   32  498-529   187-218 (411)
224 TIGR01709 typeII_sec_gspL gene  23.0      44  0.0011   12.7   2.6   33  309-341   102-134 (433)
225 TIGR00028 Mtu_PIN_fam Mycobact  22.8      44  0.0011   12.7   2.4   44   40-83     18-61  (155)
226 PRK06225 aspartate aminotransf  22.8      22 0.00056   14.7  -0.2   33  497-529   159-191 (375)
227 PRK06375 consensus              22.7      24 0.00061   14.5  -0.0   32  498-529   167-198 (381)
228 KOG2584 consensus               22.7      44  0.0011   12.7   3.5   25  323-347   234-258 (522)
229 PRK00199 ihfB integration host  22.5      44  0.0011   12.7   3.5   17    5-21      5-22  (91)
230 COG1574 Predicted metal-depend  22.5      45  0.0011   12.7   2.1   26   73-98     49-74  (535)
231 pfam01981 PTH2 Peptidyl-tRNA h  22.4      45  0.0011   12.6   3.8   53  304-359    42-95  (116)
232 cd06218 DHOD_e_trans FAD/NAD b  22.4      45  0.0011   12.6   3.9   38  174-211    98-135 (246)
233 pfam03458 UPF0126 UPF0126 doma  22.4      12  0.0003   16.6  -1.6   24  102-126    32-56  (81)
234 TIGR03540 DapC_direct LL-diami  22.1      17 0.00043   15.6  -0.9   32  498-529   172-203 (383)
235 TIGR02624 rhamnu_1P_ald rhamnu  21.8      46  0.0012   12.6   2.0   15  430-444    83-97  (273)
236 PRK10241 hydroxyacylglutathion  21.8      46  0.0012   12.6   1.8   45  292-340     4-48  (251)
237 pfam08731 AFT Transcription fa  21.7      46  0.0012   12.6   1.8   14   83-96     76-89  (90)
238 PRK04161 tagatose 1,6-diphosph  21.6      46  0.0012   12.5   3.0   80  446-529    83-163 (326)
239 TIGR02823 oxido_YhdH putative   21.1      47  0.0012   12.5  11.3  188  530-726    43-287 (330)
240 PRK12427 flagellar biosynthesi  21.0      48  0.0012   12.4   3.0   13  511-523    50-62  (229)
241 cd00168 SCP SCP: SCP-like extr  20.8      46  0.0012   12.6   1.1   21   33-53     23-43  (122)
242 KOG1004 consensus               20.8      42  0.0011   12.9   0.9   50  197-246    62-118 (230)
243 pfam02864 STAT_bind STAT prote  20.7      33 0.00084   13.6   0.4   11  500-510   236-246 (254)
244 TIGR02997 Sig70-cyanoRpoD RNA   20.5      49  0.0012   12.4   2.3   27  469-495   167-197 (336)
245 pfam08652 RAI1 RAI1 like. RAI1  20.1      50  0.0013   12.3   1.6   29   51-79     39-67  (68)

No 1  
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II; InterPro: IPR010074   Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most bacteria. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1965.03  Aligned_cols=717  Identities=48%  Similarity=0.778  Sum_probs=688.6

Q ss_pred             CCHHHHHHHH---HHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC----CCEEECCC-CCEEEEEECCCEEEE
Q ss_conf             9989999999---995789718899998533001107445889997512069----74899334-773689836983999
Q gi|254780970|r   16 LTKDECDQII---HILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTTG----KHVIQGPG-ENAGVVDIGGGDCVV   87 (737)
Q Consensus        16 L~~~e~~~i~---~~l~R~Pt~~El~~~~~~wSEHC~~k~~~~~l~~~~~~~----~~vi~~~~-~~a~vi~~~~~~~~~   87 (737)
                      |+++||+.|+   +.|||+||++|+.||++||||||||||||+|||+||+++    ||||+||| ||||||||+|+|+++
T Consensus         1 L~~~E~~~I~~YF~~LGRePn~~E~~~f~~mWSEHCSYKSSk~~L~~fp~~~n~k~~~Vi~GPGWeDAGVV~i~D~~avV   80 (763)
T TIGR01736         1 LSDEELELIRDYFKELGREPNDTELAMFEAMWSEHCSYKSSKKLLRQFPTKGNKKAPNVIQGPGWEDAGVVDIDDGYAVV   80 (763)
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCEEECCCCCCCCEEEECCCEEEE
T ss_conf             97658999999999738883489999998530001131002477615786434668725864553686068875977999


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC-------CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             995178877765888872105581022576778743687750457875686-------3888998887458866543087
Q gi|254780970|r   88 FKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHP-------KTKHLLSGVVAGIAGYSNSFGV  160 (737)
Q Consensus        88 ~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p-------~~~~~~~~~~~G~~~ygN~~G~  160 (737)
                      |||||||||||||||+|||||||||+|||+||||||||+||+||||++++|       |.|||+.+||+||+|||||+||
T Consensus        81 ~k~ESHNHPSaiePY~GAATGVGGI~RDvlsMGArPIALlD~LrFG~l~~~k~ekL~~k~ryL~~gVV~GI~dYGNriGV  160 (763)
T TIGR01736        81 FKIESHNHPSAIEPYNGAATGVGGIVRDVLSMGARPIALLDSLRFGPLDSPKTEKLLRKNRYLFEGVVKGISDYGNRIGV  160 (763)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEE
T ss_conf             99965588974258887000216068767763663010016534786887544774010400110223004577664210


Q ss_pred             CCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCC
Q ss_conf             211320355215676642211221121135543112256897799965765644410466667772865-3334443326
Q gi|254780970|r  161 PTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGEN-IAKKRPTVQV  239 (737)
Q Consensus       161 P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~-~~~~~~~VQ~  239 (737)
                      |||||+|.||++|++|||||++|+||++.|+++++++.+|||.||++|++|||||||||||||++|+|+ .+++|||||+
T Consensus       161 PTVgGE~~FD~~Y~~NpLVNv~CvGlv~~d~I~~g~A~~~G~~lvl~G~~TGRDGigGA~FAS~eL~E~~eee~RPAVQv  240 (763)
T TIGR01736       161 PTVGGEVEFDESYNGNPLVNVMCVGLVRKDDIVTGKAKGPGNKLVLVGSKTGRDGIGGATFASEELSEEAEEEDRPAVQV  240 (763)
T ss_pred             CCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCHHHHCCCCEEE
T ss_conf             13672777766778898255589887456760330025898449994137787765751222421272200332884110


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf             79899988899987401138301103477520111223320147752899620220466789998986178885089999
Q gi|254780970|r  240 GDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMIL  319 (737)
Q Consensus       240 gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v  319 (737)
                      |||||||+|||||||++++++|++|||||||||+||++|||.++|+|++|+|||||+||++|+|||||+|||||||+++|
T Consensus       241 GDPF~EK~LieA~LEa~~~g~V~g~kDLGaaGLt~a~~EMa~~gg~G~~~~LDkVPlRE~gM~P~EimlSESQERML~vv  320 (763)
T TIGR01736       241 GDPFTEKLLIEATLEAVDTGLVKGIKDLGAAGLTSASSEMAAKGGLGAEIDLDKVPLREEGMTPYEIMLSESQERMLLVV  320 (763)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEE
T ss_conf             77112357999999887249268873118713789999997158872699973335469887488888752100117850


Q ss_pred             ECCCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC---CCCCCC
Q ss_conf             54675889998887097131122121044310002586443443210146650114555315655510123---468725
Q gi|254780970|r  320 NPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAPEYDRAWCEPITIPPSNPQ---LLCSDE  396 (737)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~v~dlp~~~L~~~~P~~~r~~~~~~~~~~~~~~---~~~~~~  396 (737)
                      .|++++++.+||+||+++|+|||+||++++++++|+|++|+|||+++|.+++|.|+||++++.+.+.....   ..+++.
T Consensus       321 ~P~~v~~~~~i~~KyeL~~sVvG~vT~~~~~~~~~~Ge~v~dlP~~~L~~~AP~~~rP~~~~~~~~~~~~~~~~~~~p~~  400 (763)
T TIGR01736       321 APEDVEEVLEIFEKYELDASVVGEVTDEGRIRVKYKGEVVADLPIELLADEAPEYERPSEEPKYPEEEKEEDLSPEPPPA  400 (763)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEEEEECCCEEEEEECCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             47878999999997289849998993486699999383999712453088777414887133354431010466657875


Q ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCC---------CCCEEEECCCCC--CEEEEECCCCCCCHHCCC
Q ss_conf             588999998507321010356531121000110000135---------763142037776--227973045321000010
Q gi|254780970|r  397 DCTKSLLKLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGG---------DAGVIRVEGHET--KALAFSSDVTPRYVKADP  465 (737)
Q Consensus       397 d~~~~l~~vL~~pnV~SK~~i~~qyD~~V~g~tv~~Pg~---------DaaVv~~~~~~~--~gia~s~g~~p~~~~~dP  465 (737)
                      |+.++|++||+|||+|||+|||+||||+||+|||++||.         ||||+|+.+...  +|+|+|+||||+|+++||
T Consensus       401 ~l~~~~~~vL~~pN~asK~wvY~QYDheVq~rTVvkPG~G~~N~ETH~DAAVlr~~~~~~~~~glA~t~D~NPr~~~~dP  480 (763)
T TIGR01736       401 DLEDALLKVLSSPNIASKEWVYRQYDHEVQTRTVVKPGEGKMNKETHADAAVLRIKETGKLDKGLALTADCNPRYVYLDP  480 (763)
T ss_pred             CHHHHHHHHHHCCCHHHCCCEEEEECEEECCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEECH
T ss_conf             67899999862333021541376511067325776078887774111541346640568775278997078766033160


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CC
Q ss_conf             01135678977764102785102232210245666862134699999999852210288665443200112368----66
Q gi|254780970|r  466 FEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNG----QS  541 (737)
Q Consensus       466 ~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~----~~  541 (737)
                      |+||+.||+||+|||+|+||+||+++||||||||++||+||||.++|+||+|+|++|++|||||||||||||++    ++
T Consensus       481 y~Ga~~~vaEa~RNLa~vGA~PLa~vDcLNFGNPErPEvywQf~~~v~Gl~daa~~l~~PVVgGNVSLYNE~~~~~~~~~  560 (763)
T TIGR01736       481 YAGAAAAVAEAYRNLAAVGAEPLAIVDCLNFGNPERPEVYWQFVEAVKGLGDAARALGTPVVGGNVSLYNETNGEDAKVP  560 (763)
T ss_pred             HHHHHHHHHHHHHCEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCEECCCCCCCCCCCCC
T ss_conf             35588977743112564087548888405689888703678999999999999986388988211000231037872435


Q ss_pred             CCCCCCCCCCCCCCCCEEEEE-CCCCCCCCCEEECCCCC-CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             676311122223335202331-02143898075137766-5543267888861167899964798999999999999999
Q gi|254780970|r  542 IFPTPTIAGVGILPDYSLMTR-IDSAHEGDLILMIGNDG-CHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMIN  619 (737)
Q Consensus       542 I~pTpvi~~vG~v~d~~~~it-~~~k~~Gd~I~liG~~~-~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~  619 (737)
                      |.|||+|+++|+++|+++..+ ..+++.||.|||+|.|+ ++||||+|++.+++...|.+|.+|++.+++..+.++++|+
T Consensus       561 i~PTP~i~~VG~~~Dv~~~~~~~~~~~~Gd~~~l~Get~~~ElGGS~Y~~~~~g~~~G~~P~vDl~~e~~~~d~v~~~i~  640 (763)
T TIGR01736       561 IAPTPTIGMVGLVEDVEKLLTSLNFKKEGDAIYLIGETKKDELGGSEYLKVVHGIVSGQVPAVDLEEEKELADAVREAIR  640 (763)
T ss_pred             CCCCCEEEEEEEECCCCCCCCCCHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             37851589998842742125642054479769993143236664767877778844786888786888999999999974


Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC--CCHHHHHHCCCCCCEEEEECHHHH-HHHHHHHHHCCCCE
Q ss_conf             598069946486579999999984589708998056668--987888729883218999968809-98999998579849
Q gi|254780970|r  620 AKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIE--KDPKPFLFGEDQGRYVVCISPENQ-DLVMSEANNKNIPL  696 (737)
Q Consensus       620 ~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~--~d~~~~LFsEs~Gr~ii~V~~~~~-~~~~~~~~~~gi~~  696 (737)
                      +++|+++||||.|||++||+||++++++|++|+++....  .++...||||++||+|++|+.++. ......|...++++
T Consensus       641 ~g~v~~ahDvS~GGLAvaLAem~~~~G~Ga~~~~~~~~~~~~r~~~~LFSEs~gR~iv~~~~~~~v~~~~~ff~~~~~~a  720 (763)
T TIGR01736       641 EGLVSAAHDVSRGGLAVALAEMAIASGIGAEVDIDEIASETARADELLFSESNGRAIVAVREEKAVEEAVKFFESKGVPA  720 (763)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEE
T ss_conf             06820554433523899999999744862599725788500002688706778866999579799999998731236506


Q ss_pred             EEEE-EECCCEEEEE------CCEECCHHHHHHHHHHHHHHHH
Q ss_conf             9989-9879868980------7412149999999999999872
Q gi|254780970|r  697 RYLG-KVSGSTLSIH------NILNIPVATLQTKYESWFPEFI  732 (737)
Q Consensus       697 ~~IG-~Vt~~~l~i~------~~~~~~i~~l~~~w~~~l~~~~  732 (737)
                      .+|| ++.++.++|+      +.++.++++|++.|+++|+++|
T Consensus       721 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~  763 (763)
T TIGR01736       721 KVIGEKTGGEKLTIKTGDFKLDEISVSVKELKEAWEEALPELM  763 (763)
T ss_pred             EEEEEEECCCEEEEEECCCEEEEEEECHHHHHHHHHHHHHHCC
T ss_conf             7774786486379851673034432017889999988765309


No 2  
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00  E-value=0  Score=1773.12  Aligned_cols=728  Identities=54%  Similarity=0.889  Sum_probs=701.3

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEECCCE
Q ss_conf             14788998619998999999999578971889999853300110744588999751206974899334773689836983
Q gi|254780970|r    5 SPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTTGKHVIQGPGENAGVVDIGGGD   84 (737)
Q Consensus         5 ~~~~e~~~~~gL~~~e~~~i~~~l~R~Pt~~El~~~~~~wSEHC~~k~~~~~l~~~~~~~~~vi~~~~~~a~vi~~~~~~   84 (737)
                      ...++++++|||+.+||++|++.|||+|||+||+||+|+||||||||+||+|||+|++++++||++|+||||||+++++|
T Consensus         5 ~~~~~~~~~~gL~~~E~~~i~~~LgR~Ptd~El~~~~q~wSEHC~yK~sk~~l~~~~~~~~~vl~~~~dnAgvv~~~~~~   84 (736)
T PRK01213          5 PITPELYAEHGLTDDEYERILEILGREPNFTELGIFSVMWSEHCSYKSSKPHLRKFPTKGPRVLQGPGENAGVVDIGDGQ   84 (736)
T ss_pred             CCCHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEECCCCEEEEEECCCE
T ss_conf             66688998839999999999998688987999999988875540677638999747888995678548860599957986


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999517887776588887210558102257677874368775045787568638889988874588665430872113
Q gi|254780970|r   85 CVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVG  164 (737)
Q Consensus        85 ~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~  164 (737)
                      +++||+|||||||||+||+|||||+||+|||+++|||||+|++|.||||+|+.|+++|++.+++.|+++||||||+|||+
T Consensus        85 ~~~fK~ETHNHPsaIePf~GAaTGvGG~iRD~~~~GA~Pia~~d~l~fG~~~~~~~~~i~~gvv~G~s~YGN~~G~Ptv~  164 (736)
T PRK01213         85 AVVFKIESHNHPSAVEPYQGAATGVGGILRDIFTMGARPIALLNSLRFGELDHPKTRYLVEGVVAGIGGYGNCVGVPTVG  164 (736)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCC
T ss_conf             99999788899987788796101668700178766874155245555689898635344321244321057444657533


Q ss_pred             CEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             20355215676642211221121135543112256897799965765644410466667772865333444332679899
Q gi|254780970|r  165 GEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFT  244 (737)
Q Consensus       165 G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~  244 (737)
                      |+++||++|.+||+|+++|+|+++.++++++++.++||+||++||+|||||||||||||.+++++.+.++++||||||||
T Consensus       165 G~~~F~~~y~~nplv~a~~vG~v~~~~i~~~~~~~~G~~vv~lGg~tgrdGigGas~sS~~~~~~s~~~~~aVQ~GdP~~  244 (736)
T PRK01213        165 GEVYFDPSYNGNPLVNAMCVGLVEHDDIVKGKASGVGNPVVYVGAKTGRDGIGGATFASAELSEESEEKRPAVQVGDPFM  244 (736)
T ss_pred             EEEEECCCCCCCEEEEEEEEEEEEHHHCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCHHHCCCEECCCHHH
T ss_conf             38897156477623675578874154430256899998899934755545677501212332455544356601288678


Q ss_pred             HHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCH
Q ss_conf             98889998740113830110347752011122332014775289962022046678999898617888508999954675
Q gi|254780970|r  245 GKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQ  324 (737)
Q Consensus       245 ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~  324 (737)
                      ||+|+|+|+|++++++|.+|||+|||||+||++||+.++++|++||||+||+||++|+|||||||||||||+++|+|+++
T Consensus       245 ek~li~ac~el~~~~~I~~i~D~GAGGls~a~~Ela~~~g~G~~i~Ld~Vpl~~~gmsp~EI~~SESQERm~l~v~p~~~  324 (736)
T PRK01213        245 EKLLIEACLELFATGAVVGIQDMGAAGLTCSSSEMAAKGGLGIELDLDKVPLREEGMTPYEIMLSESQERMLLVVKPGKE  324 (736)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHEEEEECCHHH
T ss_conf             88999999987406987899856996177628998742797899991247289999888997776134315999883468


Q ss_pred             HHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC---CCCCCCCCCHHHH
Q ss_conf             8899988870971311221210443100025864434432101466501145553156555101---2346872558899
Q gi|254780970|r  325 HKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAPEYDRAWCEPITIPPSN---PQLLCSDEDCTKS  401 (737)
Q Consensus       325 ~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~v~dlp~~~L~~~~P~~~r~~~~~~~~~~~~---~~~~~~~~d~~~~  401 (737)
                      ++|.+||+||+|+|++||+||++++++++|++++++|||+++|++++|+|+|++++|.......   ........+++++
T Consensus       325 ~~~~~i~~re~~~~~vVG~vt~~~~l~v~~~g~~vvdlp~~~L~~~~P~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (736)
T PRK01213        325 EEVLAIFEKWDLDAAVIGEVTDTGRLRVYHKGEVVADIPIKALADEAPVYDRPVEEPAYLDELQEDAAELPRPEDDLKEA  404 (736)
T ss_pred             HHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99999998859988999999338829999899779994789966899755676667554321223433367875319999


Q ss_pred             HHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             99985073210103565311210001100001357631420377762279730453210000100113567897776410
Q gi|254780970|r  402 LLKLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNII  481 (737)
Q Consensus       402 l~~vL~~pnV~SK~~i~~qyD~~V~g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~  481 (737)
                      |+++|+|||||||+|||+||||+||++|||+|++||||++++ ++++|+|||+|++|+|+.+|||+||++||+||+|||+
T Consensus       405 l~~vLs~pnVaSK~~l~~qyD~~V~g~TV~~P~~DaaVi~i~-~s~~g~a~s~g~~p~~~~~dP~~ga~~aV~Ea~rNlv  483 (736)
T PRK01213        405 LLKLLSSPNIASKRWVYEQYDHQVQGNTVVKPGGDAAVVRIE-GTGKGLAMTTDCNPRYVYLDPYEGAKLAVAEAYRNVA  483 (736)
T ss_pred             HHHHHCCCCCCCCHHHHHHCCCHHCCCCCCCCCCCEEEEEEC-CCCEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             999861876335112677418101477134689871799855-8975899955878515206999999999999997788


Q ss_pred             CCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             27851022322102456668621346999999998522102886654432001123686667631112222333520233
Q gi|254780970|r  482 ATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMT  561 (737)
Q Consensus       482 a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~i  561 (737)
                      |+||+|++++|||||+||++|+.||||+++++||.|+|++|++|++||||||||++.+.+|+|||+|+++|.++|+++.+
T Consensus       484 a~Ga~plai~d~lnfgnPe~pe~~~~l~~av~g~~dac~~l~ipvv~GkdSlyne~~~~~I~PTpvI~~vg~v~Dv~~~v  563 (736)
T PRK01213        484 AVGAEPLAITDCLNFGNPEKPEVMWQFVEAVRGIAEACRALGTPVVGGNVSLYNETNGTAIYPTPVIGMVGLIDDVTKAI  563 (736)
T ss_pred             HHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEEEEEEECCHHCC
T ss_conf             61786132212532389778778788999999999999981999675753773666993578751599877750600023


Q ss_pred             ECCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf             10214389807513776655432678888611678999647989999999999999995980699464865799999999
Q gi|254780970|r  562 RIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEM  641 (737)
Q Consensus       562 t~~~k~~Gd~I~liG~~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EM  641 (737)
                      |+++|++||.||++|.++.+||||+|++.+++...+.+|.+|++.+++.++++++++++++|.|+||+|||||++||+||
T Consensus       564 t~~~k~~g~~i~lig~~~~~LGGS~~~~~~~~~~~~~~P~vd~~~~~~~~~~i~~li~~~~I~s~HDiSdGGL~~aLaEM  643 (736)
T PRK01213        564 TSGFKEEGDLIYLLGETKGELGGSEYLKVVHGRVGGRPPAVDLAAEKRLGELLREAIRAGLVSSAHDVSDGGLAVALAEM  643 (736)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
T ss_conf             73335789749997178776562199999727558989987999999999999999977986999888615899999999


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC-EEEEECCEECCHHHH
Q ss_conf             8458970899805666898788872988321899996880998999998579849998998798-689807412149999
Q gi|254780970|r  642 TISSAKGMDIILPIEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS-TLSIHNILNIPVATL  720 (737)
Q Consensus       642 a~as~~G~~I~L~~~~~~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~-~l~i~~~~~~~i~~l  720 (737)
                      ||++++|++|+|+.. ..++..+||||++||+|++|++++.++|.++++++|+++.+||+|+++ .+.+++.+++++++|
T Consensus       644 af~~~~G~~i~l~~~-~~~~~~~LFsE~~gr~vveV~~~~~~~~~~~~~~~gi~~~~IG~v~~~~~i~~~~~~~~~~~eL  722 (736)
T PRK01213        644 AIASGLGATVDLSSD-GGRPDALLFSESQGRYVVSVPPENEEAFEELAEALGVPATVIGVVGGDDAVLGQGLISLSVEEL  722 (736)
T ss_pred             HHCCCCCEEEECCCC-CCCHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCEEEEHHHH
T ss_conf             856997379962888-8876776128888659999858899999999987799889988998855395177224159999


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999987245
Q gi|254780970|r  721 QTKYESWFPEFISE  734 (737)
Q Consensus       721 ~~~w~~~l~~~~~~  734 (737)
                      ++.|++||+++|+.
T Consensus       723 ~~~w~~~L~~~m~~  736 (736)
T PRK01213        723 REAWEGALPRLLGG  736 (736)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999998897487


No 3  
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=100.00  E-value=0  Score=1685.43  Aligned_cols=715  Identities=47%  Similarity=0.745  Sum_probs=678.7

Q ss_pred             HHHHHCCCCHHHHHHHHH-HHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC--CCCEEECCCCCEEEEEECCCEE
Q ss_conf             899861999899999999-9578971889999853300110744588999751206--9748993347736898369839
Q gi|254780970|r    9 EILTAHGLTKDECDQIIH-ILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTT--GKHVIQGPGENAGVVDIGGGDC   85 (737)
Q Consensus         9 e~~~~~gL~~~e~~~i~~-~l~R~Pt~~El~~~~~~wSEHC~~k~~~~~l~~~~~~--~~~vi~~~~~~a~vi~~~~~~~   85 (737)
                      +.+..++|+++||++|++ .+||+||++||+||+|||||||||||||+|||+|+++  +++|++||+||||+|+++|+|+
T Consensus        17 ~~~~gl~L~~dE~~~i~~~~~GR~P~~~El~mf~~~WSEHC~yKssk~~lk~~~~t~~~~~vi~g~gdnAgvvdi~d~~~   96 (743)
T COG0046          17 NTELGLALSDDEYDYIREFLLGREPTDTELGMFAQMWSEHCSYKSSKSLLKMFPTTHTGEYVLSGPGDNAGVVDIGDGWA   96 (743)
T ss_pred             HHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCEEEECCCEE
T ss_conf             06755389989999999974688986999999999876344765269999619987888717875267763588679679


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99995178877765888872105581022576778743687750457875686388899888745886654308721132
Q gi|254780970|r   86 VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGG  165 (737)
Q Consensus        86 ~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G  165 (737)
                      ++||+||||||||||||+|||||+||||||+++|||||+|++|+|+||.|+.|+++||+.+++.||++||||||+|||+|
T Consensus        97 v~fKvESHNHPSaIePy~GAATGvGGiIRDv~smGArPiA~l~~l~fG~~~~~~~~~i~~gvv~Gia~YGN~iGvPtv~G  176 (743)
T COG0046          97 VVFKVESHNHPSAIEPYQGAATGVGGIIRDVLSMGARPIALLDSLRFGIPDIEKTRYIMKGVVAGIAAYGNEIGVPTVGG  176 (743)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCE
T ss_conf             99985467898866887973046576562243467600010102124799973056787400640332376346554424


Q ss_pred             EEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHC-CCCCCCCCCCCCCCHHH
Q ss_conf             03552156766422112211211355431122568977999657656444104666677728-65333444332679899
Q gi|254780970|r  166 EVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFG-ENIAKKRPTVQVGDPFT  244 (737)
Q Consensus       166 ~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~-~~~~~~~~~VQ~gdp~~  244 (737)
                      +++||++|.+|||||++|+|+++.++++++++.++||+||++|++||||||||++|||++++ ++.+.+||+||+|||||
T Consensus       177 e~~fd~~y~~npLvna~~vG~i~~~~i~~~~a~~~G~~li~~Gg~TgrDGigGat~aS~~~~~~~~e~dr~aVQvGdPf~  256 (743)
T COG0046         177 EFRFDESYVGNPLVNAGCVGLIRKEHIVKGEAIGPGDKLILLGGKTGRDGIGGATFASMELGEESEEEDRPSVQVGDPFM  256 (743)
T ss_pred             EEEECCCCCCCCEEEEEEEECCCHHHEEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCHHH
T ss_conf             89974443789607878862011444110467899987999747756566573323104427451553477501278588


Q ss_pred             HHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCH
Q ss_conf             98889998740113830110347752011122332014775289962022046678999898617888508999954675
Q gi|254780970|r  245 GKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQ  324 (737)
Q Consensus       245 ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~  324 (737)
                      ||++||+|+|+.++++|++|||+|||||+||++||+.++++|++|+||+||+||++|+|||||||||||||+++|.|+++
T Consensus       257 Ek~l~ea~le~~~~~~I~~i~DlGAgGLs~A~~Ela~~gg~G~~i~Ld~VP~rE~gMsp~Ei~~SESQERMllvv~p~~~  336 (743)
T COG0046         257 EKRLQEAILECVQTGLIKGIQDLGAGGLSCAISELAAKGGLGAEIDLDKVPLREPGMSPYEIWLSESQERMLLVVAPEDV  336 (743)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEHHCCCCCCCCCCHHHHHHHCCCHHEEEEECCCCH
T ss_conf             89999999998731976887416873132238999733697069980008346799988998873110105899851349


Q ss_pred             HHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88999888709713112212104431000258644344321014665011455531565551012346872558899999
Q gi|254780970|r  325 HKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLK  404 (737)
Q Consensus       325 ~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~v~dlp~~~L~~~~P~~~r~~~~~~~~~~~~~~~~~~~~d~~~~l~~  404 (737)
                      ++|.+||+||+++|+|||+||++++++++|+|+.++|+|+++|.+++|+|+|++.+|.+..+ .....+...++++++++
T Consensus       337 e~~~~i~~k~~l~~aVVG~vT~~~~~~~~~~ge~v~dlP~~~L~~~aP~~~r~~~~~~~~~~-~~~~~~~~~~l~~a~~~  415 (743)
T COG0046         337 EEFLEICEKERLPAAVVGEVTDEPRLVVDWKGEPVVDLPIDVLAGKAPKYDRPVKEPKKEEA-GDVPEPEEPDLEEALLK  415 (743)
T ss_pred             HHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCEEEECCHHHHCCCCCEEECCCCCCCCCCC-CCCCCCCCCCHHHHHHH
T ss_conf             99999999718980799999437659999789678866579976899744035534565445-55567776309999999


Q ss_pred             HHHCCCCCCHHHHHHHCCCCCCCCCCCCCC--CCCCEEEECCCC--CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHH
Q ss_conf             850732101035653112100011000013--576314203777--6227973045321000010011356789777641
Q gi|254780970|r  405 LLSSPNLSSRRWVYEQYDTMIQSNSIQLPG--GDAGVIRVEGHE--TKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI  480 (737)
Q Consensus       405 vL~~pnV~SK~~i~~qyD~~V~g~tv~~Pg--~DaaVv~~~~~~--~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl  480 (737)
                      +|++||||||+|||+||||+||++|++.||  +||||++++..+  ++|+|||+|+||+|+++|||+||++||+||+|||
T Consensus       416 vL~~p~vask~~l~~qyD~~V~~~Tv~~pG~~~DaaV~r~~~~~~~~~g~A~t~~~np~~~~ldpy~Ga~~aVaEa~rNl  495 (743)
T COG0046         416 VLSSPNVASKEWLYEQYDRSVGGNTVVDPGPVADAAVLRISEDSGTGKGLAMTTGENPRYALLDPYAGAKLAVAEALRNL  495 (743)
T ss_pred             HHCCCCHHHHCCEEEECCEEECCCEEECCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHHHH
T ss_conf             86385411112435642423034245058887664799850467876248997488986067776677999999999778


Q ss_pred             HCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             02785102232210245666862134699999999852210288665443200112368666763111222233352023
Q gi|254780970|r  481 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLM  560 (737)
Q Consensus       481 ~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~  560 (737)
                      +|+||+|+++++||||++|++||.||||.++++|+.|+|++|++||+||||||||+|+|.+|+|||+|+++|+++|+++.
T Consensus       496 ~a~Ga~pla~~d~lnfg~pe~pE~~~q~~~a~~g~~eac~~l~~pvv~GnvSlynet~~~~i~PTpvi~~vg~v~dv~k~  575 (743)
T COG0046         496 AATGAKPLALTDNLNFGNPEKPEVMGQFVAAVAGLAEACRALGIPVVGGNVSLYNETNGQPIPPTPVIGAVGLVEDVRKV  575 (743)
T ss_pred             HHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEECHHHH
T ss_conf             76087004120032057999801566799999999999998099800342300200179646996569999986232342


Q ss_pred             EECCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
Q ss_conf             31021438980751377665543267888861167899964798999999999999999598069946486579999999
Q gi|254780970|r  561 TRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAE  640 (737)
Q Consensus       561 it~~~k~~Gd~I~liG~~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~E  640 (737)
                      +++.+++.|+.||++|.++++||||+|++.+++...+.+|.+|++.+|+.++++++++++++|+|+||+|+|||+++|+|
T Consensus       576 ~~~~~~~~g~~i~llG~~~~~lggS~~~~~~~~~~~g~~p~~dl~~ek~~~~~i~~~i~~~~v~aahD~s~GGL~~aLae  655 (743)
T COG0046         576 LTPELKKAGLLLYLLGETKDELGGSELAQVYHGLGDGPPPVVDLAEEKKFFDAIRALIADGKVLAAHDVSDGGLAVALAE  655 (743)
T ss_pred             CCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf             37554668868999089756665549999985113799997798999999999999975696579987365609999999


Q ss_pred             HHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEE----CCEECC
Q ss_conf             9845897089980566689878887298832189999688099899999857984999899879868980----741214
Q gi|254780970|r  641 MTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSIH----NILNIP  716 (737)
Q Consensus       641 Ma~as~~G~~I~L~~~~~~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~~l~i~----~~~~~~  716 (737)
                      |||++++|++|+++.....++...||||++||+|+++++++..  .......++++.+||.++++.....    ..+..+
T Consensus       656 maf~~~~G~~i~~~~~~~~~~~~~LFsE~~gr~i~~~~~~~~~--~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  733 (743)
T COG0046         656 MAFAGGIGLEIDLDELGDDRLDALLFSESLGRVIVVVAEEEAE--VEGAEAVGVPLKVIGLVGGDHEIGAAVNEFLVPVS  733 (743)
T ss_pred             HHHCCCCCEEEECCCCCCCCHHHHHHCCCCCCEEEEECCHHHH--HHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCCC
T ss_conf             9851587227875545653146675276787389995631444--43201027524563201465067511466544556


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780970|r  717 VATLQTKYES  726 (737)
Q Consensus       717 i~~l~~~w~~  726 (737)
                      ++++++.|+.
T Consensus       734 ~~el~~~~~~  743 (743)
T COG0046         734 VEELREAWEG  743 (743)
T ss_pred             HHHHHHHHCC
T ss_conf             9999876449


No 4  
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=100.00  E-value=0  Score=1436.00  Aligned_cols=718  Identities=24%  Similarity=0.341  Sum_probs=627.7

Q ss_pred             HHHHHHHHHCCC--CHHHHHHHHH---HHCCCCCHHHHHHHHHHHCCCCCCCCCH------------HHHHHHHH----C
Q ss_conf             147889986199--9899999999---9578971889999853300110744588------------99975120----6
Q gi|254780970|r    5 SPILEILTAHGL--TKDECDQIIH---ILKRQPTLTEIGIISAMWNEHCSYKSSK------------KWLRTLPT----T   63 (737)
Q Consensus         5 ~~~~e~~~~~gL--~~~e~~~i~~---~l~R~Pt~~El~~~~~~wSEHC~~k~~~------------~~l~~~~~----~   63 (737)
                      +.+.++++++||  +.+|++|+.+   .|||+|||+||+||+|.||||||||+|+            +++++++.    .
T Consensus       168 ~al~~~n~~~glal~~~ei~yl~~~f~~l~RnptdvEl~~~aQ~nSEHcrHkiF~~~~~idg~~~~~slf~mi~~t~~~~  247 (1294)
T PRK05297        168 AALEAANVELGLALAEDEIDYLVEAFTKLGRNPTDVELMMFAQANSEHCRHKIFNADWTIDGEEQEKSLFKMIKNTHETT  247 (1294)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHCCCEECCCEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             99998788726467988999999999971899707888776431123412510258523258417345999999999759


Q ss_pred             CCCEEECCCCCEEEEE------------------ECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCEE
Q ss_conf             9748993347736898------------------369839999951788777658888721055810225767--78743
Q gi|254780970|r   64 GKHVIQGPGENAGVVD------------------IGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFT--MGARP  123 (737)
Q Consensus        64 ~~~vi~~~~~~a~vi~------------------~~~~~~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~--~Ga~p  123 (737)
                      ++++|++|.|||+||+                  ..+.++++||+|||||||+|+||+|||||+||+|||+++  |||+|
T Consensus       248 ~~~~~sa~~DNa~vi~g~~~~~~~p~~~~~~~~~~~~~~~~~~KvETHNHPTaIePf~GAATG~GG~IRD~~atG~Ga~P  327 (1294)
T PRK05297        248 PDGVLSAYKDNAAVMEGSKVGRFFPDPETGRYRYHQEPTHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGSKP  327 (1294)
T ss_pred             CCCCEEEECCCCCEEECCCCCEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEE
T ss_conf             88707886067524642422124326999865554210058998514789876688897414657612356667876442


Q ss_pred             EEEEEECCCCCCCCCC-----------------HHHHHHHHHHHHHHHHHHCCCCCCCCEEE-EEC-----------CCC
Q ss_conf             6877504578756863-----------------88899888745886654308721132035-521-----------567
Q gi|254780970|r  124 VAAMNSLRFGAIHHPK-----------------TKHLLSGVVAGIAGYSNSFGVPTVGGEVE-FLP-----------CYN  174 (737)
Q Consensus       124 ~a~~~~l~~g~~~~p~-----------------~~~~~~~~~~G~~~ygN~~G~P~v~G~~~-~~~-----------~y~  174 (737)
                      +|++++|||+++..|.                 +..|+.+++.|+++||||||+|+++|+++ |..           +|+
T Consensus       328 ~Ag~~gy~~~~lripg~~~Pwe~~~~~P~~i~s~l~I~~~a~~G~s~yGN~fG~P~i~Gy~rtfe~~~~~~~~~e~~gy~  407 (1294)
T PRK05297        328 KAGLTGFSVSNLRIPGFEQPWEEDYGKPERIASALDIMIEGPLGGAAFNNEFGRPNLLGYFRTFEQKVNSHNGGEVRGYH  407 (1294)
T ss_pred             ECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCEECCEEEEEEEECCCCCCCEEECCC
T ss_conf             03531254046668887887533468864346830046410001410285137733053456632202556775262035


Q ss_pred             CCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHH---HHH
Q ss_conf             664221122112113554311225689779996576564441046666777286533-3444332679899988---899
Q gi|254780970|r  175 NNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIA-KKRPTVQVGDPFTGKC---LLE  250 (737)
Q Consensus       175 ~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~-~~~~~VQ~gdp~~ek~---~~~  250 (737)
                       +|+++++++|.++.+++.+..+ .+||+||++|||||||||||+++||.+.+++.+ .|+++||||||+||||   +++
T Consensus       408 -kpim~aGgvG~i~~~~v~k~~~-~~G~~vi~lGG~tgrdGiGGat~SS~~~~~~s~~ld~~sVQrGnp~mErr~qevi~  485 (1294)
T PRK05297        408 -KPIMLAGGIGNIRADHVQKGEI-PVGAKLIVLGGPAMRIGLGGGAASSMASGQSSEDLDFASVQRGNPEMERRCQEVID  485 (1294)
T ss_pred             -CCEEEEEEEEECCHHHCCCCCC-CCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             -7769986677046665414589-99999999789655457785012123216764234541102488789999999999


Q ss_pred             HHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHH
Q ss_conf             98740113830110347752011122332014775289962022046678999898617888508999954675889998
Q gi|254780970|r  251 ACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEI  330 (737)
Q Consensus       251 ~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i  330 (737)
                      +|+++.++|+|++|||+|||||+||++||++++++|++|+||+||++|++|+|||||||||||||+++|+|+++++|.+|
T Consensus       486 ~c~el~~~npI~~IhD~GAGGlsnai~Ela~~~~~G~~i~Ld~Vp~~~~glsp~EIw~sESQERm~l~v~~~~~~~f~~i  565 (1294)
T PRK05297        486 RCWQLGDNNPILSIHDVGAGGLSNAFPELVNDGGRGGRFDLRKVPSDEPGMSPLEIWCNESQERYVLAIAPEDLELFEAI  565 (1294)
T ss_pred             HHHHCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCEEEEEHHHCCCCCCCCCHHHHHHHCCCHHEEEEECHHHHHHHHHH
T ss_conf             99971689877999855887311012877613687189992107167899888998664330007999887569999999


Q ss_pred             HHHHCCEEECCCCEEECCCCCCC--CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             88709713112212104431000--2586443443210146650114555315655510123468725588999998507
Q gi|254780970|r  331 LNKWGLHFSIIGITTNDKLFRVI--HRGEEVANLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSS  408 (737)
Q Consensus       331 ~~~~~~~~~~iG~vt~~~~~~v~--~~g~~v~dlp~~~L~~~~P~~~r~~~~~~~~~~~~~~~~~~~~d~~~~l~~vL~~  408 (737)
                      |+||+||+++||+||++++++++  ++++.++|||+++|++++|+++|....+..   ..+.......++++++++||+|
T Consensus       566 ~~rE~~~~~vVG~vT~~~~l~~~d~~~~~~~vdl~~~~L~g~~P~~~~~~~~~~~---~~~~~~~~~~~l~~al~~vL~~  642 (1294)
T PRK05297        566 CERERCPFAVVGEATEERHLTLNDSHFDNKPVDLPLDVLLGKPPKMHRDVKTVKA---KGPALDYTGIDLAEAVERVLRL  642 (1294)
T ss_pred             HHHCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEHHHHCCCCCCEEEEECCCCC---CCCCCCCCCCCHHHHHHHHHCC
T ss_conf             9980998368998725865999843679704870889965899734776103575---6787677877899999997428


Q ss_pred             CCCCCHHHHHHHCCCCCCCCC--------CCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHH
Q ss_conf             321010356531121000110--------000135763142037776227973045321000010011356789777641
Q gi|254780970|r  409 PNLSSRRWVYEQYDTMIQSNS--------IQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI  480 (737)
Q Consensus       409 pnV~SK~~i~~qyD~~V~g~t--------v~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl  480 (737)
                      ||||||+||++||||+|+|.+        +|.|++||||++.++.+.+|+|||+|++|+++.+|||+|+++||+||+|||
T Consensus       643 p~VaSK~fLi~~~DrsVgG~vardq~VGP~Q~PvaD~aV~~~~~~~~~G~Ama~Ge~P~~a~~dP~agar~AVaEAltNL  722 (1294)
T PRK05297        643 PTVASKSFLITIGDRSVTGLVARDQMVGPWQVPVADCAVTAASYDGYAGEAMSMGERTPVALLDAAASARMAVGEALTNI  722 (1294)
T ss_pred             CCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEECCHHHHHHHHHHHHHHHH
T ss_conf             87345323056414214735730445566545767722785137897269998347882050398899999999999986


Q ss_pred             HCCCCCHHH-HHHHCCCCCC-CCCCHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCC--------CCCCCCCCCC
Q ss_conf             027851022-3221024566-68621346999999998-52210288665443200112368--------6667631112
Q gi|254780970|r  481 IATGAKPLA-ITDNLNFGNP-EKEEIMGQFVHSVKGIR-EACQILDFPIVSGNVSFYNETNG--------QSIFPTPTIA  549 (737)
Q Consensus       481 ~a~Ga~Pla-it~~lnf~~P-~~~e~~~ql~~av~gl~-d~c~~lgipivgGkvSl~n~t~~--------~~I~pTpvi~  549 (737)
                      +++|+.++. +.++.||++| .+|..-++|+++|+++. ++|.+||+|+++|||||||.+.+        ...|||++|+
T Consensus       723 vaa~i~~l~~i~LSaNWM~a~g~pgE~a~Ly~av~Ai~~e~c~~Lgi~ip~GKDSlSm~~~~~e~~~~~~v~~P~TLVis  802 (1294)
T PRK05297        723 AAAPIGDLKRIKLSANWMAAAGHPGEDAGLYDAVKAVGMELCPALGITIPVGKDSLSMKTKWQEGGEDKEVTSPLSLIIS  802 (1294)
T ss_pred             HHCCCCCHHHEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEECCCCCEEEE
T ss_conf             63456667663744100445799853689999999999988998398634576666755265218975243378877999


Q ss_pred             CCCCCCCCEEEEECCCCCCCCCEEEC--CCCCCCCCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             22233352023310214389807513--776655432678888611678999647-989999999999999995980699
Q gi|254780970|r  550 GVGILPDYSLMTRIDSAHEGDLILMI--GNDGCHLDCSMYSLECASSNIGPPPKV-DCHLEKNHGFFVLSMINAKKITAC  626 (737)
Q Consensus       550 ~vG~v~d~~~~it~~~k~~Gd~I~li--G~~~~~LggS~~~~~~~~~~~g~~p~~-d~~~~k~~~~~v~~li~~g~I~S~  626 (737)
                      ++|.++|+++.+||++|+.|+.||++  +.++.+||||.|++.+.. ..+.+|++ |.+.+|+.|+++++++++++|.|+
T Consensus       803 a~a~v~Dv~~~vTPelK~~gs~L~lIdl~~~~~~LGGS~laqv~~~-~g~~~Pdvd~~~~lk~~f~~iq~Li~~glI~S~  881 (1294)
T PRK05297        803 AFAPVEDVRKTLTPQLRTDDTVLLLIDLGRGKNRLGGSALAQVYNQ-LGDEAPDVDDPEDLKGFFNAIQALVAEGLLLAY  881 (1294)
T ss_pred             EEEEECCCCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9997147110326443159987999976899675214499998565-679896977899999999999999977987898


Q ss_pred             EECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCC--EEEEEEECC
Q ss_conf             464865799999999845897089980566689878887298832189999688099899999857984--999899879
Q gi|254780970|r  627 HDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIP--LRYLGKVSG  704 (737)
Q Consensus       627 HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~--~~~IG~Vt~  704 (737)
                      ||+|||||++||+||||++++|++|+++.. ..+++..||+|++| +|++|++++.+.+.+.+++.++.  +.+||+++.
T Consensus       882 HDvSDGGL~~alaEMaFag~~G~~I~l~~~-~~d~~~~LFsEe~G-~Viqv~~~~~~~V~~~l~~~gl~~~~~~IG~~~~  959 (1294)
T PRK05297        882 HDRSDGGLFATLAEMAFAGHCGLDIDLDAL-GDDLLAALFNEELG-AVIQVRAADRDAVEAILAEAGLSDCSHVIGKPNA  959 (1294)
T ss_pred             EECCCCHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHCCCCE-EEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf             317778099999999846785148966765-23578887451753-8999713428999999987598520489753767


Q ss_pred             C-EEEEEC----CEECCHHHHHHHHHHHHHH
Q ss_conf             8-689807----4121499999999999998
Q gi|254780970|r  705 S-TLSIHN----ILNIPVATLQTKYESWFPE  730 (737)
Q Consensus       705 ~-~l~i~~----~~~~~i~~l~~~w~~~l~~  730 (737)
                      + .+.|..    +++.++.+|++.|.++-.+
T Consensus       960 ~~~i~I~~~~~~i~~~~~~~L~~~W~etS~~  990 (1294)
T PRK05297        960 GDRIEITRNGKTVFSESRTELRRWWAETSYQ  990 (1294)
T ss_pred             CCCEEEEECCEEEEHHHHHHHHHHHHHHHHH
T ss_conf             8728999899987362399999999886666


No 5  
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase; InterPro: IPR010073   This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I) perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit .; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=100.00  E-value=0  Score=1378.45  Aligned_cols=719  Identities=24%  Similarity=0.355  Sum_probs=629.2

Q ss_pred             HHHHHHHHHCCC--CHHHHHHH---H-HHHCCCCCHHHHHHHHHHHCCCCCCCCC------------HHHHHHHHHC---
Q ss_conf             147889986199--98999999---9-9957897188999985330011074458------------8999751206---
Q gi|254780970|r    5 SPILEILTAHGL--TKDECDQI---I-HILKRQPTLTEIGIISAMWNEHCSYKSS------------KKWLRTLPTT---   63 (737)
Q Consensus         5 ~~~~e~~~~~gL--~~~e~~~i---~-~~l~R~Pt~~El~~~~~~wSEHC~~k~~------------~~~l~~~~~~---   63 (737)
                      ..+.+++.++||  +.+|+||+   + ..|+|+|+||||+||||.||||||||+|            |++++++++|   
T Consensus       183 ~ALE~AN~elGLAL~~de~DYl~~~fr~~L~RnP~dVEL~mfAQaNSEHcRHkiFna~~~idG~~q~kSLF~mIk~T~e~  262 (1401)
T TIGR01735       183 KALEKANQELGLALDEDEIDYLTKRFRQELKRNPSDVELMMFAQANSEHCRHKIFNADWIIDGKKQDKSLFQMIKSTHEA  262 (1401)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCEEECCCHHCCHHHHHHHHHHHC
T ss_conf             99999989853045756889999999998378987246887753031010003112533778812110378988988733


Q ss_pred             -CCCEEECCCCCEEEEEEC--------------------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf             -974899334773689836--------------------98399999517887776588887210558102257--6778
Q gi|254780970|r   64 -GKHVIQGPGENAGVVDIG--------------------GGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDI--FTMG  120 (737)
Q Consensus        64 -~~~vi~~~~~~a~vi~~~--------------------~~~~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi--~~~G  120 (737)
                       .+++|++|.|||+||+..                    +..+|+||+|||||||||.||+||+||.||+|||.  ++.|
T Consensus       263 ~~~~~v~aykDNssvI~G~~v~r~rP~~~t~~~y~~~~~~~~~i~~kvETHNhPTAiaPFpGA~TGaGGeIRDegATGRG  342 (1401)
T TIGR01735       263 NPENTVSAYKDNSSVIEGHKVGRLRPDPPTRVEYRQHQEDDVHILMKVETHNHPTAIAPFPGASTGAGGEIRDEGATGRG  342 (1401)
T ss_pred             CCCCEEEEEECCHHHHCCCCEECCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf             99960898831124654742000078887660244431267218998513788864677678887878736436644887


Q ss_pred             CEEEEEEEECCCCCCCCC------------------CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-CC------
Q ss_conf             743687750457875686------------------38889988874588665430872113203552156-76------
Q gi|254780970|r  121 ARPVAAMNSLRFGAIHHP------------------KTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCY-NN------  175 (737)
Q Consensus       121 a~p~a~~~~l~~g~~~~p------------------~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y-~~------  175 (737)
                      |+|+|+|.+|||||+..|                  .+..|+.+...|.|+|||+||+|++.|++|.++.. +.      
T Consensus       343 a~pkAGl~Gf~VsNL~IPg~~~PWE~~S~~~P~~~aspLdImieap~G~aafnNeFGrP~L~GYfRtfe~~~~~P~~~~R  422 (1401)
T TIGR01735       343 AKPKAGLTGFCVSNLNIPGLEQPWEDPSFQKPERIASPLDIMIEAPLGAAAFNNEFGRPALLGYFRTFELKVSLPGGEVR  422 (1401)
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             71433345610202517788878875421365224576787640676524327765773022233203332116775544


Q ss_pred             -CCCCCEEEECCCCHHHHHHCCCC-CCCCEEEEECCCCCCCCCHHHHHHH-HHHCCCCCC-CCCCCCCCCHHHHHH---H
Q ss_conf             -64221122112113554311225-6897799965765644410466667-772865333-444332679899988---8
Q gi|254780970|r  176 -NIIVNTFAAGIAKTNAIFSSKAR-GIGLPLVYLGAKTGRDGIGGASMAS-EEFGENIAK-KRPTVQVGDPFTGKC---L  248 (737)
Q Consensus       176 -~~~v~~~~~Gi~~~~~~~~~~~~-~~Gd~ii~~G~~tg~dGi~Ga~~sS-~~~~~~~~~-~~~~VQ~gdp~~ek~---~  248 (737)
                       ...|+|+++||+.++..+-.|.. .+|+.||+||||.||||+||+++|| ...+.+.++ ||+|||||||+||||   |
T Consensus       423 ~y~KPIMlaGGiG~I~~~hi~K~e~~~G~~~i~lGGPam~IGlGGGAASSvm~~G~n~~~LDF~sVQR~nPEMerr~qeV  502 (1401)
T TIGR01735       423 GYHKPIMLAGGIGSIDAEHIQKGEIEVGALLIVLGGPAMLIGLGGGAASSVMVSGTNDADLDFASVQRGNPEMERRCQEV  502 (1401)
T ss_pred             CCCCCHHHHHHHCCHHHHCCCCCCCCCCCEEEEECCCEEECCCCCCCHHCEEECCCCCHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             43351244310100012121057878886899857862254565410000010578815524333577886887688899


Q ss_pred             HHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHH
Q ss_conf             99987401138301103477520111223320147752899620220466789998986178885089999546758899
Q gi|254780970|r  249 LEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQ  328 (737)
Q Consensus       249 ~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~  328 (737)
                      ||+|+++.++|||.+|||+|||||+||++|+..+++.|+.|+|.+||+.|++|||+||||+||||||+|.|.+++++.|.
T Consensus       503 Id~C~~lG~~NPI~siHDvGAGGlsNa~pEL~~d~~~Ga~i~lr~v~~~d~~lspLEIWcnEsQEryvL~v~~~~l~~f~  582 (1401)
T TIGR01735       503 IDRCVQLGEKNPIISIHDVGAGGLSNALPELINDGGRGAVIDLRAVPLDDPGLSPLEIWCNESQERYVLLVKAEDLEIFT  582 (1401)
T ss_pred             HHHHHHCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             99998587986846771257572001001000614478558884652588887767663004555577632720079999


Q ss_pred             HHHHHHCCEEECCCCEEECCCCCCCCCC-----------------------------------CCCCCCCCCCCCCCCCE
Q ss_conf             9888709713112212104431000258-----------------------------------64434432101466501
Q gi|254780970|r  329 EILNKWGLHFSIIGITTNDKLFRVIHRG-----------------------------------EEVANLPIKALSDEAPE  373 (737)
Q Consensus       329 ~i~~~~~~~~~~iG~vt~~~~~~v~~~g-----------------------------------~~v~dlp~~~L~~~~P~  373 (737)
                      .||+||+||++|||++|++.|++|.+.-                                   ..+||||++.|+|++|+
T Consensus       583 ~iC~RERcPfAvvG~at~~~~l~l~D~~~lPaalhvteqqtPqranht~~~~~~~~~~P~~~~n~pvDLpLevlLGK~Pk  662 (1401)
T TIGR01735       583 AICERERCPFAVVGTATGDRRLILVDDRELPAALHVTEQQTPQRANHTEVAKTSKEDAPSHFPNNPVDLPLEVLLGKAPK  662 (1401)
T ss_pred             HHHHHHCCCEEEEEEEECCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf             88564069837898786682489973761440100000257430113556668788631232138642740534488786


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC--------CCCCCCCCCCCEEEECCC
Q ss_conf             145553156555101234687255889999985073210103565311210001--------100001357631420377
Q gi|254780970|r  374 YDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMIQS--------NSIQLPGGDAGVIRVEGH  445 (737)
Q Consensus       374 ~~r~~~~~~~~~~~~~~~~~~~~d~~~~l~~vL~~pnV~SK~~i~~qyD~~V~g--------~tv~~Pg~DaaVv~~~~~  445 (737)
                      ++|...++.+  ...+.......++.+++.|||+||+||||+||++++||+|+|        |++|.|++||||+...++
T Consensus       663 ~~r~~~~~a~--~~~pl~~~~~l~l~~A~~RVLRlP~VA~K~FL~TigDRsvgGLvAr~QmVGP~Q~PlADvAVt~~sf~  740 (1401)
T TIGR01735       663 MTRKVKRKAP--AKQPLDIAPGLDLHEALERVLRLPAVASKRFLITIGDRSVGGLVARDQMVGPWQIPLADVAVTAASFD  740 (1401)
T ss_pred             CCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHCCCCHHHCCCCEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             5423267787--67774678786489998876306200203443330220125620122000661565677898872102


Q ss_pred             CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHH---HHHHHCCCCCCCCCCHHHHHHHHHHHH-HHHHHH
Q ss_conf             7622797304532100001001135678977764102785102---232210245666862134699999999-852210
Q gi|254780970|r  446 ETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPL---AITDNLNFGNPEKEEIMGQFVHSVKGI-REACQI  521 (737)
Q Consensus       446 ~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Pl---ait~~lnf~~P~~~e~~~ql~~av~gl-~d~c~~  521 (737)
                      ++.|-||++||+|..+.+||.++||+||+||+|||+++-+..|   .++.||||.--..-|. ..||++|+++ .++|.+
T Consensus       741 ~y~GeA~A~GE~p~~aLLD~~A~ARlAVgEAiTNl~~A~v~~L~~vKlSaNWM~AA~~~GEd-a~LYdav~A~G~e~c~a  819 (1401)
T TIGR01735       741 TYTGEAMAIGERPPLALLDPKASARLAVGEAITNLAAALVGDLSDVKLSANWMAAAGHPGED-AALYDAVKAVGSELCPA  819 (1401)
T ss_pred             CCCCCCEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHCCCCCCC-HHHHHHHHHHHHHHHHH
T ss_conf             12210111144110233385688889999999887530400110324450279746899961-78999999999999886


Q ss_pred             CCCCCCCCCCCCCCCCCCCC-----C--CCCCCCCCCCCCCCCEEEEECCCCCC-----CCCEEE-CCCCCCCCCHHHHH
Q ss_conf             28866544320011236866-----6--76311122223335202331021438-----980751-37766554326788
Q gi|254780970|r  522 LDFPIVSGNVSFYNETNGQS-----I--FPTPTIAGVGILPDYSLMTRIDSAHE-----GDLILM-IGNDGCHLDCSMYS  588 (737)
Q Consensus       522 lgipivgGkvSl~n~t~~~~-----I--~pTpvi~~vG~v~d~~~~it~~~k~~-----Gd~I~l-iG~~~~~LggS~~~  588 (737)
                      |||.|++|||||||+|.|..     +  |-+++||++..|+|+++.+||++|..     +++||+ ++..+.+||||+++
T Consensus       820 Lgi~IpvGKDSLSM~~~w~~ge~~~V~aP~SLvISAfa~v~Dvr~tvTP~Lk~~~~v~~s~Ll~vdL~~Gk~RLGGsaLA  899 (1401)
T TIGR01735       820 LGIAIPVGKDSLSMKTRWQDGEKKSVTAPVSLVISAFAPVPDVRKTVTPDLKLDKDVGDSELLLVDLGKGKNRLGGSALA  899 (1401)
T ss_pred             CCCCCCCCCCCCCHHHHHCCCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEE
T ss_conf             48614777776211321048874088806731787556336643357854457887664314688743476541443433


Q ss_pred             HHHH-----CCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC--
Q ss_conf             8861-----167899964-79899999999999999959806994648657999999998458970899805666898--
Q gi|254780970|r  589 LECA-----SSNIGPPPK-VDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKD--  660 (737)
Q Consensus       589 ~~~~-----~~~~g~~p~-~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~~d--  660 (737)
                      |.+.     -...+.+|+ .+.+.+|+.|..+|.|+++++++|+||+|||||+++|+||||||+||++||++......  
T Consensus       900 QV~~dsaalP~lG~~~PDlD~~~~Lk~fF~~~Q~L~a~~~llAyHDrSDGGL~~~l~EMAFAG~cGl~~d~~~~~~~~~~  979 (1401)
T TIGR01735       900 QVFGDSAALPQLGGDCPDLDDVERLKAFFAVIQGLVAEDLLLAYHDRSDGGLVTTLLEMAFAGHCGLDVDLDALGDSLEI  979 (1401)
T ss_pred             EEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf             21000243344067888988867899999999999766870401511425899999998751368657613442013667


Q ss_pred             ------------------------HHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEC---CCEEEEEC--
Q ss_conf             ------------------------7888729883218999968809989999985798499989987---98689807--
Q gi|254780970|r  661 ------------------------PKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVS---GSTLSIHN--  711 (737)
Q Consensus       661 ------------------------~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt---~~~l~i~~--  711 (737)
                                              ....||||++| +||+|.+.+.+.|.+.++.+++.+.+++.++   ...+.|+.  
T Consensus       980 ~nhtalsqslrteevkalaewqeti~~~LF~EELG-aV~qV~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~i~i~~~~ 1058 (1401)
T TIGR01735       980 LNHTALSQSLRTEEVKALAEWQETILAVLFNEELG-AVIQVAEEDLAAVLELLRAAGLTALILGIGTPTDEPSIEISVNG 1058 (1401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECC
T ss_conf             76677776654678899988899999863022545-36883241178999999864871333131401567778986088


Q ss_pred             --CEECCHHHHHHHHHHH
Q ss_conf             --4121499999999999
Q gi|254780970|r  712 --ILNIPVATLQTKYESW  727 (737)
Q Consensus       712 --~~~~~i~~l~~~w~~~  727 (737)
                        .++....+|+++|+.+
T Consensus      1059 ~~~~s~~~~~L~~~W~et 1076 (1401)
T TIGR01735      1059 ATLLSEKRSELRDIWEET 1076 (1401)
T ss_pred             EEEEHHHHHHHHHHHHHH
T ss_conf             465025689999988889


No 6  
>KOG1907 consensus
Probab=100.00  E-value=0  Score=1118.26  Aligned_cols=722  Identities=23%  Similarity=0.294  Sum_probs=623.1

Q ss_pred             HHHHHHHHHCCCC--HHHHHHHH----HHHCCCCCHHHHHHHHHHHCCCCCCCCCH------------HHHHHHHH----
Q ss_conf             1478899861999--89999999----99578971889999853300110744588------------99975120----
Q gi|254780970|r    5 SPILEILTAHGLT--KDECDQII----HILKRQPTLTEIGIISAMWNEHCSYKSSK------------KWLRTLPT----   62 (737)
Q Consensus         5 ~~~~e~~~~~gL~--~~e~~~i~----~~l~R~Pt~~El~~~~~~wSEHC~~k~~~------------~~l~~~~~----   62 (737)
                      +.+.++++++||+  +.|++|+.    +.++|+|||+||+||+|.||||||||+|+            ++++++.+    
T Consensus       184 ~~L~~aNqelGLAld~~dldyy~~~f~~~~kR~PTdVELFd~aQsnSEHsRHwfF~g~~~IDg~k~d~SL~kmIr~T~~~  263 (1320)
T KOG1907         184 QALEKANQELGLALDQLDLDYYYDLFVEEVKRNPTDVELFDFAQSNSEHSRHWFFRGDWTIDGRKQDKSLFKMIRNTHDS  263 (1320)
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHEECCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf             99998778745345734179999999998537988425554002561653421441526870620763799999999861


Q ss_pred             CCCCEEECCCCCEEEEEEC-------------------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC
Q ss_conf             6974899334773689836-------------------98399999517887776588887210558102257--67787
Q gi|254780970|r   63 TGKHVIQGPGENAGVVDIG-------------------GGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDI--FTMGA  121 (737)
Q Consensus        63 ~~~~vi~~~~~~a~vi~~~-------------------~~~~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi--~~~Ga  121 (737)
                      ..++.+++|.|||++++.-                   +...+.||+|||||||||.||+||+||.||+|||+  ++.|+
T Consensus       264 n~~ntiiafsDNssa~~gf~~~~~~~P~s~v~~~~~~~~~~~ll~~aETHN~PtAVsPfpGA~TGtGGrIRD~~atGrGs  343 (1320)
T KOG1907         264 NNDNTIIAFSDNSSAIRGFNSVTRFAPNSTVSPWIVIFEPSDLLFKAETHNHPTAVSPFPGATTGTGGRIRDEGATGRGS  343 (1320)
T ss_pred             CCCCCEEEECCCHHHHHCCCCCEEECCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             89974478636567751545442653566545524413776558886305787535788887468786352255446664


Q ss_pred             EEEEEEEECCCCCCCCCC------------------HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC--------CC
Q ss_conf             436877504578756863------------------8889988874588665430872113203552156--------76
Q gi|254780970|r  122 RPVAAMNSLRFGAIHHPK------------------TKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCY--------NN  175 (737)
Q Consensus       122 ~p~a~~~~l~~g~~~~p~------------------~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y--------~~  175 (737)
                      .++|.|.++|+|+++.|-                  +..|+.++..|.+||||+||.|+|.|+++.+...        .+
T Consensus       344 ~~~agtaGysvg~LnipG~~qPwE~l~f~yP~~iA~pl~ImIEAsnGaSdygNkFGeP~I~Gy~rtfg~~v~~~~gerre  423 (1320)
T KOG1907         344 YEIAGTAGYSVGDLNIPGYKQPWEDLDFGYPYHIASPLDIMIEASNGASDYGNKFGEPVISGYARTFGMRVLLENGERRE  423 (1320)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             23303444220135678887887423558864447877877227577044435236624555666541123566743001


Q ss_pred             CCCCCEEEECCCCHHHHHHCC-CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHH---HHH
Q ss_conf             642211221121135543112-2568977999657656444104666677728653-33444332679899988---899
Q gi|254780970|r  176 NIIVNTFAAGIAKTNAIFSSK-ARGIGLPLVYLGAKTGRDGIGGASMASEEFGENI-AKKRPTVQVGDPFTGKC---LLE  250 (737)
Q Consensus       176 ~~~v~~~~~Gi~~~~~~~~~~-~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~-~~~~~~VQ~gdp~~ek~---~~~  250 (737)
                      ...++++++||+.+++.+..| +..||..||++|||.+|+|+||+++||...++.. +.||++||||||+||+|   +++
T Consensus       424 y~KPIMfsgGiG~i~~~~~~K~~~apg~~likiGGp~yrIG~GGGAASSv~~G~g~aeLDFaaVQRGdaEM~~kl~rVvr  503 (1320)
T KOG1907         424 YHKPIMFSGGIGTIRKQHARKEPIAPGQLLIKIGGPVYRIGVGGGAASSVVQGEGSAELDFAAVQRGDAEMERKLQRVVR  503 (1320)
T ss_pred             CCCCEEEECCCCCCCHHHHHCCCCCCCCEEEEECCCEEEEECCCCHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHH
T ss_conf             12453760565766877752379999977999668268983266244455437984234568763489889889999999


Q ss_pred             HHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHH
Q ss_conf             98740113830110347752011122332014775289962022046678999898617888508999954675889998
Q gi|254780970|r  251 ACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEI  330 (737)
Q Consensus       251 ~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i  330 (737)
                      ||.++.++|+|.+|||+||||.++++.|+.+.++.|++++++++++.|++|||+||||+|||||+++.|++++++.|++|
T Consensus       504 AC~~lge~NpI~sIHDqGAGGn~NvlkELV~~~~~Ga~~~~r~~~~gdpsmS~~EiW~aEyQE~~allv~a~~l~~le~I  583 (1320)
T KOG1907         504 ACAELGENNPIQSIHDQGAGGNGNVLKELVEDNDLGATFDSRTFQLGDPSMSPMEIWCAEYQENYALLVKAEDLDILESI  583 (1320)
T ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCEEEECHHHHHHHHHH
T ss_conf             99973479962676225778643120866166677617974135407987779998645442152344379899999999


Q ss_pred             HHHHCCEEECCCCEEECCCCCCCCC--CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             8870971311221210443100025--86443443210146650114555315655510123468725588999998507
Q gi|254780970|r  331 LNKWGLHFSIIGITTNDKLFRVIHR--GEEVANLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSS  408 (737)
Q Consensus       331 ~~~~~~~~~~iG~vt~~~~~~v~~~--g~~v~dlp~~~L~~~~P~~~r~~~~~~~~~~~~~~~~~~~~d~~~~l~~vL~~  408 (737)
                      |+|++||++|||++|.++|+++..+  .++.+|+++..|++++|++.|+..++.+  ..++...++...+.++|.+||+.
T Consensus       584 ckRERcp~svVG~vt~eqR~~l~d~~~~~~aidl~~~~llG~~pK~s~~l~~~~~--~lk~l~lp~~~~l~dAl~RVL~L  661 (1320)
T KOG1907         584 CKRERCPVSVVGEVTGEQRVILLDKLAKETAIDLEMRQLLGKPPKMSRKLKRAPR--VLKKLELPSGLTLRDALERVLRL  661 (1320)
T ss_pred             HHHCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             8742687268998726715998257789886377348662898201301355423--44100489987099999998605


Q ss_pred             CCCCCHHHHHHHCCCCCCC--------CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHH
Q ss_conf             3210103565311210001--------10000135763142037776227973045321000010011356789777641
Q gi|254780970|r  409 PNLSSRRWVYEQYDTMIQS--------NSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI  480 (737)
Q Consensus       409 pnV~SK~~i~~qyD~~V~g--------~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl  480 (737)
                      |+|+||+|++++.||+|+|        +++|.|.+|+||+..++.+.+|.|+++|++|....+||.++|||+|+|+++||
T Consensus       662 psV~SKrfLttkvDRsVtGLiaqqQ~VGPlqvplADvavt~~S~~~~tG~A~amGeqPik~Lida~a~ARm~VaE~l~NL  741 (1320)
T KOG1907         662 PSVASKRFLTTKVDRSVTGLIAQQQCVGPLQVPLADVAVTATSHFDTTGEAVAMGEQPIKALIDAAASARMCVAEALMNL  741 (1320)
T ss_pred             CCCCCCCEEEEECCCHHHHEEEHHHCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHH
T ss_conf             33243311665225101102211110476324202136788887615561000366464766087777678999999876


Q ss_pred             HCCCCCHHH-HHHHCCCCCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCC--CCCCCCCCCCC
Q ss_conf             027851022-322102456668621-3469999999985221028866544320011236--86667--63111222233
Q gi|254780970|r  481 IATGAKPLA-ITDNLNFGNPEKEEI-MGQFVHSVKGIREACQILDFPIVSGNVSFYNETN--GQSIF--PTPTIAGVGIL  554 (737)
Q Consensus       481 ~a~Ga~Pla-it~~lnf~~P~~~e~-~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~--~~~I~--pTpvi~~vG~v  554 (737)
                      +++.++-+. +..+-||+++.+.+. =..|++|++++.....+|||.|.||||||+|..+  ++.+.  -|++|+++..+
T Consensus       742 v~a~i~sL~dvK~SgNWM~aak~~GEGarlydAv~aL~~~L~eLgiAIdgGKDSlSMa~k~~ge~VkaPgtLvIsayapc  821 (1320)
T KOG1907         742 VAAKITSLKDVKLSGNWMWAAKHPGEGARLYDAVQALCLGLCELGIAIDGGKDSLSMAMKWDGEVVKAPGTLVISAYAPC  821 (1320)
T ss_pred             HHHCCCCHHHEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCEEECCCCCCHHHHEEECCEEEECCCEEEEEEECCC
T ss_conf             74136504320202535210569984047999999999999981531037852011000158808715753899861357


Q ss_pred             CCCEEEEECCCCC--CCCC--EEE--CCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             3520233102143--8980--751--377665543267888861167899964798999999999999999598069946
Q gi|254780970|r  555 PDYSLMTRIDSAH--EGDL--ILM--IGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHD  628 (737)
Q Consensus       555 ~d~~~~it~~~k~--~Gd~--I~l--iG~~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HD  628 (737)
                      +|+.+.+||++|.  .|+.  |++  +++.+.+||||.+++.+.+.....|...|...+++.|..+++|++.++|.|+||
T Consensus       822 ~dv~k~vtP~Lk~~~~gs~~~Ll~i~l~~~k~rLGgSaLaQvy~QiG~d~Pdl~~~~~lk~~f~~vqqL~~~~ii~AgHD  901 (1320)
T KOG1907         822 PDVTKTVTPDLKANVDGSKTSLLWIDLANSKMRLGGSALAQVYSQIGDDCPDLDNFDELKKFFSVVQQLLNEGIILAGHD  901 (1320)
T ss_pred             CCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCC
T ss_conf             87310425122477899721799998455322354589999999737889985334889889999999975673342553


Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEECCCCC-CCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEC---C
Q ss_conf             486579999999984589708998056668-987888729883218999968809989999985798499989987---9
Q gi|254780970|r  629 ISTGGLIITLAEMTISSAKGMDIILPIEIE-KDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVS---G  704 (737)
Q Consensus       629 iSdGGL~~aL~EMa~as~~G~~I~L~~~~~-~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt---~  704 (737)
                      +|||||+++++||||++++|++|||+.... ..+...||+|+.| +|++|...+.+.+++++.++|+++++||++.   +
T Consensus       902 ~SDGGLlvt~lEMAfag~~gi~idl~~~~~~~~~~~~LF~EElG-~v~evs~~dl~~v~~~~~~~gv~~~~ig~~~~~~g  980 (1320)
T KOG1907         902 ISDGGLLVTLLEMAFAGNVGIEIDLDSPNQNIKLFDILFAEELG-AVLEVSDTDLEKVLEIFSEAGVKCEYIGKASAVFG  980 (1320)
T ss_pred             CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC-EEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             56772008899987604662278547743456188899898617-17786265399999999864986125411003447


Q ss_pred             -C-EEEEEC----CEECCHHHHHHHHHHHHH
Q ss_conf             -8-689807----412149999999999999
Q gi|254780970|r  705 -S-TLSIHN----ILNIPVATLQTKYESWFP  729 (737)
Q Consensus       705 -~-~l~i~~----~~~~~i~~l~~~w~~~l~  729 (737)
                       + .++++.    +++..+.+|++.|+.+=-
T Consensus       981 ~~~~i~~~~~g~~~~~~~~s~L~~~We~tsy 1011 (1320)
T KOG1907         981 QDAHIKISVNGHLILNEKLSDLREEWELTSY 1011 (1320)
T ss_pred             CCCEEEEECCCEEEECCHHHHHHHHHHHHHH
T ss_conf             7745999518857844547899999988578


No 7  
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141   This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP..
Probab=100.00  E-value=0  Score=1094.44  Aligned_cols=697  Identities=22%  Similarity=0.321  Sum_probs=607.9

Q ss_pred             CHHHHHHHHHCCC--CHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH-----------H-----
Q ss_conf             2147889986199--989999999995---789718899998533001107445889997512-----------0-----
Q gi|254780970|r    4 PSPILEILTAHGL--TKDECDQIIHIL---KRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLP-----------T-----   62 (737)
Q Consensus         4 ~~~~~e~~~~~gL--~~~e~~~i~~~l---~R~Pt~~El~~~~~~wSEHC~~k~~~~~l~~~~-----------~-----   62 (737)
                      .+.++.+..+.||  +.++++.|++++   +|+||.||+.++++|||+||||.+|-+.|+.+.           +     
T Consensus       178 ~e~~~~f~~e~GLAM~l~DL~fiq~YFk~~~R~PT~TEiKVlDTYWSDHCRHTTFET~l~~v~~~~skf~~~~~~~y~~Y  257 (1279)
T TIGR01857       178 AEDLKKFKAEKGLAMSLEDLKFIQDYFKEIGRNPTITEIKVLDTYWSDHCRHTTFETELKEVTIEDSKFSKQLKKAYEDY  257 (1279)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             78888777543764227899988766123789886156644326657885157544344047648642213789989899


Q ss_pred             ---------C----CCCEEECC---------------------CCCEEEEEE-------C-----CCEEEEEEECCCCCC
Q ss_conf             ---------6----97489933---------------------477368983-------6-----983999995178877
Q gi|254780970|r   63 ---------T----GKHVIQGP---------------------GENAGVVDI-------G-----GGDCVVFKMESHNHP   96 (737)
Q Consensus        63 ---------~----~~~vi~~~---------------------~~~a~vi~~-------~-----~~~~~~~k~EtHNhP   96 (737)
                               +    -|-.|+-.                     --||+.|.+       .     ++|+++||+||||||
T Consensus       258 ~~~r~~l~~~nln~k~v~LMDmATI~~kylkk~G~Ld~LevSeEiNACSv~v~vdv~~~~GkkaiE~wLLmFKNETHNHP  337 (1279)
T TIGR01857       258 LAMREELGRENLNEKPVSLMDMATIVAKYLKKNGKLDDLEVSEEINACSVEVEVDVDGVEGKKAIEEWLLMFKNETHNHP  337 (1279)
T ss_pred             HHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf             99887622211104786200357788787652685588751103142379999985287674024336542145778658


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC---------HHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             7658888721055810225767787436877504578756863---------8889988874588665430872113203
Q gi|254780970|r   97 SYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPK---------TKHLLSGVVAGIAGYSNSFGVPTVGGEV  167 (737)
Q Consensus        97 s~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~---------~~~~~~~~~~G~~~ygN~~G~P~v~G~~  167 (737)
                      |.||||+|||||+||.|||+++..++.++.|..-.-|||.-|-         .+.|..++-.|.|+|||++|+.|-.-.-
T Consensus       338 TEIEPFGGAATClGGAIRDPLSGRSYVYQAmRvtGaadpt~~v~ETl~GKLPQ~ki~~tAA~GYSSYGNQIGLAT~~V~E  417 (1279)
T TIGR01857       338 TEIEPFGGAATCLGGAIRDPLSGRSYVYQAMRVTGAADPTVPVSETLKGKLPQRKITTTAAHGYSSYGNQIGLATGQVSE  417 (1279)
T ss_pred             CCCCCCCCHHHHCCCCCCCCCCCHHHEEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCEEE
T ss_conf             23378874445357541377763003011001105778855401011588741133220113210122246553161347


Q ss_pred             EEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCCHHHHH
Q ss_conf             5521567664221122112113554311225689779996576564441046666777286-533344433267989998
Q gi|254780970|r  168 EFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGE-NIAKKRPTVQVGDPFTGK  246 (737)
Q Consensus       168 ~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~-~~~~~~~~VQ~gdp~~ek  246 (737)
                      .|||+|..+.|-.++.|+..|+++++|.+|. +||.||+|||+||||||||||.||+++++ +.+.+.+.||+||+..||
T Consensus       418 iYHpGY~AKRMEvGAVvAAtP~~nV~R~~P~-~GD~iILLGGkTGRDGiGGATGSSK~h~~eS~~~~GAEVQKGNAp~ER  496 (1279)
T TIGR01857       418 IYHPGYVAKRMEVGAVVAATPKENVVREKPE-PGDVIILLGGKTGRDGIGGATGSSKEHTVESLELCGAEVQKGNAPEER  496 (1279)
T ss_pred             EECCCCEEEEEEECCEEEECCCCCCEECCCC-CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCC
T ss_conf             7657850124530014450588873526789-887899817852777556776885666368686468603038874311


Q ss_pred             HHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHH
Q ss_conf             88999874011383011034775201112233201477528996202204667899989861788850899995467588
Q gi|254780970|r  247 CLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHK  326 (737)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~  326 (737)
                      |+||++|.-.-..||+.|.|.||||+++|++|||.    |++|||++||+||+||+..||.+|||||||.++|.+||.|+
T Consensus       497 KiQRLFRn~~v~~LIKkcNDFGAGGVSVAiGELAd----G~~vdLn~VP~KYeGLdGTELAISESQERMAVvv~~Ed~d~  572 (1279)
T TIGR01857       497 KIQRLFRNGNVTRLIKKCNDFGAGGVSVAIGELAD----GLEVDLNKVPKKYEGLDGTELAISESQERMAVVVSKEDVDK  572 (1279)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCC----CEEEECCCCCCCEECCCCCEEEEECCCCCCEEECCCCCHHH
T ss_conf             11000467414556120376588732686522027----40751575874210788513312014551146728656578


Q ss_pred             HHHHHHHHCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE--EECCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             999888709713112212104431000258644344321014665011455--531565551012346872558899999
Q gi|254780970|r  327 AQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAPEYDRA--WCEPITIPPSNPQLLCSDEDCTKSLLK  404 (737)
Q Consensus       327 ~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~v~dlp~~~L~~~~P~~~r~--~~~~~~~~~~~~~~~~~~~d~~~~l~~  404 (737)
                      |.+.|++|+++++||++||+++||++.|+|++||||..+||..++-+.+-.  ...+.. +.......++..++.+.+++
T Consensus       573 F~~~~~eENL~AtvvA~VTd~~rL~m~W~G~~IVdl~R~FL~tNGv~~~~~~~V~~~~~-~~~~~~~~~~~~~l~~~~l~  651 (1279)
T TIGR01857       573 FLKYAEEENLEATVVATVTDKPRLVMNWKGKTIVDLSREFLDTNGVKQEIDVKVKDKDV-KLSVEKFKVSEETLEEKWLK  651 (1279)
T ss_pred             HHHHHHHCCCCEEEEEEEECCCCEEEEECCCEEEEEEHHHHHHCCCEEEEEEEEEECCC-CCCCCCEECCCHHHHHHHHH
T ss_conf             99875323852289999956997067117865780132113008841789899962125-56423211362047888876


Q ss_pred             HHHCCCCCCHHHHHHHCCCCCCCCCCCCCC--------CCCCEEEEC---CCCCCEEEEECCCCCCCHHCCCHHHHHHHH
Q ss_conf             850732101035653112100011000013--------576314203---777622797304532100001001135678
Q gi|254780970|r  405 LLSSPNLSSRRWVYEQYDTMIQSNSIQLPG--------GDAGVIRVE---GHETKALAFSSDVTPRYVKADPFEGTKQAV  473 (737)
Q Consensus       405 vL~~pnV~SK~~i~~qyD~~V~g~tv~~Pg--------~DaaVv~~~---~~~~~gia~s~g~~p~~~~~dP~~ga~~AV  473 (737)
                      +|+..||||.+.|.++||++||++||+.|.        .+++|.+++   +.++++.+||.|+||+.+.++||+||.|||
T Consensus       652 ~~~~LNv~SqKGL~e~FDSsvG~gTvl~PlGGkyQLTP~~a~v~KlPVl~g~t~tAS~~a~GFNPYi~~ws~yhGA~yaV  731 (1279)
T TIGR01857       652 VLKDLNVASQKGLVERFDSSVGAGTVLMPLGGKYQLTPTEASVAKLPVLGGETKTASAIAWGFNPYIAEWSPYHGAIYAV  731 (1279)
T ss_pred             HHHHHCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf             55430121247752120034171021377888645770257873277578865340244416675013577502367888


Q ss_pred             HHHHHHHHCCCCCH--HHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             97776410278510--2232210245666-86213469999999985221028866544320011236866676311122
Q gi|254780970|r  474 AECWRNIIATGAKP--LAITDNLNFGNPE-KEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAG  550 (737)
Q Consensus       474 ~Eal~Nl~a~Ga~P--lait~~lnf~~P~-~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~  550 (737)
                      .||++.|+|||++-  ..+|..-+|-... ++|+|++.+.|+.|..++..+||+|-||||||||..++..++|||++..+
T Consensus       732 vEs~AkLvAaG~~y~karLSFQEYFEkL~~~~ekwgkP~aAlLGA~~aQ~dLG~~AIGGKDSMSGtF~dL~VPPTLisFA  811 (1279)
T TIGR01857       732 VESLAKLVAAGVDYKKARLSFQEYFEKLDKDEEKWGKPFAALLGALKAQVDLGLPAIGGKDSMSGTFEDLDVPPTLISFA  811 (1279)
T ss_pred             HHHHHHHHHCCCCEEEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             99999999728970378862002233237775100670899988999988708876686347750158898870255344


Q ss_pred             CCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             22333520233102143898075137766554326788886116789996479899999999999999959806994648
Q gi|254780970|r  551 VGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDIS  630 (737)
Q Consensus       551 vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiS  630 (737)
                      |+.. +.+++++|+||..++.||++-....+-+                -.+|.+.+|..|..+.++++...|+|+.-+-
T Consensus       812 V~~~-~~~~v~SpEFK~~~~~i~~i~~~~l~~~----------------~~~d~~~lk~nf~~~~~~~~~~kv~Sa~~~k  874 (1279)
T TIGR01857       812 VATA-NVKRVISPEFKKAGEKIYLIEGKALEDD----------------LTLDSDELKENFEKIEELIKDHKVVSASAVK  874 (1279)
T ss_pred             HHHH-HCCCCCCCHHHCCCCEEEEECCCCCCCC----------------CCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             3243-1110236023302875887066202246----------------7506788999999999840577479997446


Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCEEEEECHH-HHHHHHHHHHHCCCCEEEEEEECCC-EEE
Q ss_conf             65799999999845897089980566689878887298832189999688-0998999998579849998998798-689
Q gi|254780970|r  631 TGGLIITLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYVVCISPE-NQDLVMSEANNKNIPLRYLGKVSGS-TLS  708 (737)
Q Consensus       631 dGGL~~aL~EMa~as~~G~~I~L~~~~~~d~~~~LFsEs~Gr~ii~V~~~-~~~~~~~~~~~~gi~~~~IG~Vt~~-~l~  708 (737)
                      =||++-+|.+|.|++++|+.|+.+..     .+-||+-.+|.||++++.+ +++   ..+  ....+..||+|+.+ .+.
T Consensus       875 yGG~~E~L~kmslGNriG~~~n~~~~-----ve~lf~~~~GS~~~e~~e~~~L~---~e~--~~~~~~~~G~t~~~f~~k  944 (1279)
T TIGR01857       875 YGGVAEALAKMSLGNRIGAELNNKEV-----VEDLFTLKYGSFILEVKEDVKLE---DEL--ELANVEKIGETTKDFVLK  944 (1279)
T ss_pred             CCHHHHHHHHHHCCCEEEEEECCHHH-----HHHHHCCCCCCEEEECCCCCCCH---HHH--CCCCEEECCCEEEEEEEE
T ss_conf             01688989874014523378807678-----87652457464789726777444---453--022403414175202799


Q ss_pred             EEC-CEECCHHHHHHHHHHHHHHHHC
Q ss_conf             807-4121499999999999998724
Q gi|254780970|r  709 IHN-ILNIPVATLQTKYESWFPEFIS  733 (737)
Q Consensus       709 i~~-~~~~~i~~l~~~w~~~l~~~~~  733 (737)
                      .++ ..++++++|.++|++.|+.+|-
T Consensus       945 ~~gyd~~~~L~~l~~A~~~~Le~vFp  970 (1279)
T TIGR01857       945 VNGYDEKLDLEELEEAWEEKLEEVFP  970 (1279)
T ss_pred             EEEEEEEECHHHHHHHHHCCCCEECC
T ss_conf             85235530679999998637830156


No 8  
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00  E-value=0  Score=851.56  Aligned_cols=304  Identities=51%  Similarity=0.834  Sum_probs=297.4

Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99998533001107445889997512069748993347736898369839999951788777658888721055810225
Q gi|254780970|r   36 EIGIISAMWNEHCSYKSSKKWLRTLPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRD  115 (737)
Q Consensus        36 El~~~~~~wSEHC~~k~~~~~l~~~~~~~~~vi~~~~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRD  115 (737)
                      ||+||+|+||||||||+||++|++|                       |+++||+|||||||||+||+|||||+||+|||
T Consensus         1 El~~~~~~wSEHC~~k~~~~~l~~~-----------------------~~~~~k~EsHNhPSai~Py~GAaTGvGGiiRD   57 (313)
T cd02203           1 ELGMFAQMWSEHCRHKSFKSLLKMI-----------------------WAVVFKVETHNHPSAIEPFGGAATGVGGIIRD   57 (313)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHH-----------------------HEEEEEECCCCCCCCCCCCCCCCCCCCCEECC
T ss_conf             9367776766233653269999987-----------------------70288834678988678878501045630025


Q ss_pred             CCCCCCEEEEEEEECCCCCCCCC--------CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCC
Q ss_conf             76778743687750457875686--------3888998887458866543087211320355215676642211221121
Q gi|254780970|r  116 IFTMGARPVAAMNSLRFGAIHHP--------KTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIA  187 (737)
Q Consensus       116 i~~~Ga~p~a~~~~l~~g~~~~p--------~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~  187 (737)
                      |++|||||+|+||+||||+|+.|        +++||+.++++||+|||||||+|+|+|+++||++|..||+|+++|+|++
T Consensus        58 i~~~GA~pia~~d~l~fG~~~~~~~~~~~~~~~~~i~~~vv~GisdyGN~~GvP~v~G~~~f~~~y~~nPlv~~~~vG~v  137 (313)
T cd02203          58 ILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGVVAGISDYGNCIGIPTVGGEVRFDPSYYGNPLVNVGCVGIV  137 (313)
T ss_pred             CCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf             45668667776546520699887655545668989987751356653865576235579998665467843787547753


Q ss_pred             CHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCC
Q ss_conf             1355431122568977999657656444104666677728653-334443326798999888999874011383011034
Q gi|254780970|r  188 KTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENI-AKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQD  266 (737)
Q Consensus       188 ~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~-~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D  266 (737)
                      +.+++.++++.++||+||++|++|||||||||+|||.+++++. +.++++|||||||+||+|+++|++++++|+|.+|||
T Consensus       138 ~~~~~~~~~~~~~G~~iv~vGg~tgrdGigGasfsS~~~~~~~~~~~~~aVQ~gdP~~ek~l~e~~le~~~~~li~~ihD  217 (313)
T cd02203         138 PKDHIVKSKAPGPGDLVVLVGGRTGRDGIGGATFSSKELSENSSELDRPAVQVGDPFMEKKLQEAILEARETGLIVGIQD  217 (313)
T ss_pred             EHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             37770256689999889999078666652210354032046643346554322866888899999998885498688886


Q ss_pred             CCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEEE
Q ss_conf             77520111223320147752899620220466789998986178885089999546758899988870971311221210
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTN  346 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~  346 (737)
                      +|||||+||++||+.++++|++||||+||+++++|+|||||||||||||+++|+|+++++|++||+||++++++||+||+
T Consensus       218 ~GaGGl~~a~~Ema~~~~~G~~i~Ld~vp~~~~~m~p~Eil~SESQERm~~~v~~~~~~~~~~i~~k~~~~~~vIG~vt~  297 (313)
T cd02203         218 LGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREPGMSPWEIWISESQERMLLVVPPEDLEEFLAICKKEDLEAAVIGEVTD  297 (313)
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHEEEECCHHCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             58850654237776148973999903470577999864713305611089998864699999999987999799999936


Q ss_pred             CCCCCCCCCCCCCCCC
Q ss_conf             4431000258644344
Q gi|254780970|r  347 DKLFRVIHRGEEVANL  362 (737)
Q Consensus       347 ~~~~~v~~~g~~v~dl  362 (737)
                      +++|+|+|++++++||
T Consensus       298 ~~~~~v~~~~e~v~dl  313 (313)
T cd02203         298 DGRLRLYYKGEVVADL  313 (313)
T ss_pred             CCEEEEEECCEEEEEC
T ss_conf             9869999999898739


No 9  
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00  E-value=0  Score=487.89  Aligned_cols=263  Identities=41%  Similarity=0.655  Sum_probs=253.7

Q ss_pred             CCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC-HHHHHHHHHHH
Q ss_conf             76314203777622797304532100001001135678977764102785102232210245666862-13469999999
Q gi|254780970|r  436 DAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEE-IMGQFVHSVKG  514 (737)
Q Consensus       436 DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e-~~~ql~~av~g  514 (737)
                      ||+|+|+++.+++|+||++|++|+++.+|||+||++||+|++|||+++|++|+++++|+||++|++++ .||||+++++|
T Consensus         1 da~V~~~~~~~~~g~a~s~g~~p~~~~~dP~~ga~~aV~Ea~rni~~~Ga~p~ai~~~lnf~~p~~~~~~~~~l~~av~g   80 (264)
T cd02204           1 DAAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLAITDCLNFGNPEKPEGEMGQLVEAVLG   80 (264)
T ss_pred             CCEEEEECCCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCHHHHEECHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             95599863899859999747999614348999999999999988752698389951001102877785078889999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHCC
Q ss_conf             98522102886654432001123686667631112222333520233102143898075137766554326788886116
Q gi|254780970|r  515 IREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASS  594 (737)
Q Consensus       515 l~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS~~~~~~~~~  594 (737)
                      |+|+|++||+|++||||||||++.+.+|+|||+|+++|.+++.++.+++.++++||.||++|.+..+++||.|++.+.+.
T Consensus        81 ~~~~~~~lgiP~v~G~~Sl~n~~~~~~ippTlvi~~vg~v~~~~~~~t~~~k~~g~~i~lig~~~~~~ggs~~~~~~~~~  160 (264)
T cd02204          81 LGDACRALGTPVIGGKDSLYNETEGVAIPPTLVIGAVGVVDDVRKIVTLDFKKEGDLLYLIGETKDELGGSEYALAYHGL  160 (264)
T ss_pred             HHHHHHHCCCCEECCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCC
T ss_conf             99999970996203446651466786678852899997325730024154347998799957884557877999997087


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCEE
Q ss_conf             78999647989999999999999995980699464865799999999845897089980566689878887298832189
Q gi|254780970|r  595 NIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYV  674 (737)
Q Consensus       595 ~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~~d~~~~LFsEs~Gr~i  674 (737)
                      ..+.+|.+|++.++++++++++++++++|.|+||+|+|||+++|+|||+++++|++|+++...  ++..+||||++||+|
T Consensus       161 ~~~~~~~~d~~~~k~~~~~i~~l~~~~li~s~hDvS~GGL~~al~EMa~~~~~G~~i~l~~~~--~~~~~LFsEs~gr~v  238 (264)
T cd02204         161 GGGAPPLVDLEREKALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDD--AEDELLFSESLGRVL  238 (264)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCC--CHHHHEECCCCCEEE
T ss_conf             889856589999999999998998659612787678781999999998428965999838999--825750378888699


Q ss_pred             EEECHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             9996880998999998579849998998
Q gi|254780970|r  675 VCISPENQDLVMSEANNKNIPLRYLGKV  702 (737)
Q Consensus       675 i~V~~~~~~~~~~~~~~~gi~~~~IG~V  702 (737)
                      ++|++++.+.++  ++..++++.+||+|
T Consensus       239 v~v~~~~~~~~~--~~~~~v~~~~IG~v  264 (264)
T cd02204         239 VEVKPENEEVFE--AEEAGVPATVIGTV  264 (264)
T ss_pred             EEECCCHHHHHH--HHHCCCCEEEEEEC
T ss_conf             998724299999--98889996998769


No 10 
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase; InterPro: IPR010077   This entry describes a family of large proteins of herpes virus. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). The protein shows homology to eukaryotic FGAM-synthase. ; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0005198 structural molecule activity, 0019033 viral tegument.
Probab=100.00  E-value=0  Score=457.19  Aligned_cols=593  Identities=17%  Similarity=0.217  Sum_probs=420.6

Q ss_pred             CCCEEEEEEEECCCCCC------CC----CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-CC-----CCCCCEE
Q ss_conf             78743687750457875------68----638889988874588665430872113203552156-76-----6422112
Q gi|254780970|r  119 MGARPVAAMNSLRFGAI------HH----PKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCY-NN-----NIIVNTF  182 (737)
Q Consensus       119 ~Ga~p~a~~~~l~~g~~------~~----p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y-~~-----~~~v~~~  182 (737)
                      +|..|+|..-++..-.|      +.    +..+.+..-.++--++.-.+.|+|+++|++++-... ..     +++.+..
T Consensus       216 p~~~p~as~~G~y~~~pPqfq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~GvP~~~GF~R~i~~~~~~~~~~~~~~~~~s  295 (1313)
T TIGR01739       216 PGVSPVASALGLYYLTPPQFQALEGEQALPLARKISTALLKAQAELLRAAGVPVVGGFIRLISKNKLELGTGVTPTLFTS  295 (1313)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEEEEEEE
T ss_conf             41246788752787538400157854014678889999999999999866788411564621057830210023589865


Q ss_pred             EECCCCHHHHHHCCCCCCCC------EEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH---HH
Q ss_conf             21121135543112256897------7999657656444104666677728653334443326798999888999---87
Q gi|254780970|r  183 AAGIAKTNAIFSSKARGIGL------PLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEA---CL  253 (737)
Q Consensus       183 ~~Gi~~~~~~~~~~~~~~Gd------~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~---~~  253 (737)
                      ..+-.....+... ..++|+      .||+||.=....+-.+..+  --...++           |-.-.++.++   +.
T Consensus       296 ~~~~~~~~~~~~~-~~~~~~ksGdsl~~v~LG~F~p~~~~~~~~p--P~~y~~S-----------~~~~~~i~~~L~~~~  361 (1313)
T TIGR01739       296 ILTSLCHESLSTA-DERPGQKSGDSLDIVALGSFEPTLLPDTPGP--PLLYADS-----------PLEVNKILQALELLT  361 (1313)
T ss_pred             EECCCCCCCCCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCC--CCCCCCC-----------HHHHHHHHHHHHHHH
T ss_conf             4054210001356-6666656686589998742567766567853--8974114-----------799999999999999


Q ss_pred             -HHCC--CCCCHHCCCCCCCCHHHHHHHHHC-CCCCCEEEEEHHHCCC---------CCCCC--HHHHHH-----CCCCC
Q ss_conf             -4011--383011034775201112233201-4775289962022046---------67899--989861-----78885
Q gi|254780970|r  254 -ELMN--TDAVIAIQDMGAAGLTCSAIEMGN-QGNLGITLDLDKVPTC---------EEGMT--AYEMML-----SESQE  313 (737)
Q Consensus       254 -~~~~--~~~i~~~~D~gaGGl~~a~~Ema~-~~~~G~~i~l~~vp~~---------~~~l~--~~ei~~-----sEsQe  313 (737)
                       ++-.  .-.+..+.+.+-.=+.-.|.|++. +  .|++|++.+.|..         +.++.  -+|-++     |=.=.
T Consensus       362 ~~~~~y~~~i~~~~r~~~~~s~~~~L~~L~~~~--~Ga~l~~S~LP~~v~~~L~~~~~~~~~~P~~e~~~~~~FlN~~c~  439 (1313)
T TIGR01739       362 RDLKTYAPCIVGSIRPLGPASVKEHLTELLPDP--CGAELDLSNLPDEVVAALKASSPANAEGPELEKLVKSYFLNVVCS  439 (1313)
T ss_pred             HHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCC--CCEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             740777754885157777716899999971577--523784104988899961278701155745788886520011023


Q ss_pred             EEEEEEECC--------------CHHHHHHHHHHHCCEEECCCCEEECCCCCCCCC--CCCC-CCCCCCCCCCCCCEEEE
Q ss_conf             089999546--------------758899988870971311221210443100025--8644-34432101466501145
Q gi|254780970|r  314 RMLMILNPE--------------KQHKAQEILNKWGLHFSIIGITTNDKLFRVIHR--GEEV-ANLPIKALSDEAPEYDR  376 (737)
Q Consensus       314 R~~~~v~~~--------------~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~--g~~v-~dlp~~~L~~~~P~~~r  376 (737)
                      -+.++|+.+              -++.+...|+..+|++.+||+.+++.-++|-++  +... -...+++- ...|...+
T Consensus       440 ~v~l~v~n~~g~~~~~~~~~~~~p~~~L~~~c~~~~c~~~~lG~~~~~~g~~~v~dl~~~~~~~~~~~~~~-~~~~~~~~  518 (1313)
T TIGR01739       440 VVFLTVKNSSGLDEVTELDEGVTPLEALKRACRLAGCQVLVLGKLVELPGLHIVSDLFNPVPVTYATFDFT-SATPTVPE  518 (1313)
T ss_pred             EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEECCCCCCCCCEEEEECC-CCCCCCCC
T ss_conf             05688705767321124675335899999999961994799987304888678606788976411333013-22456766


Q ss_pred             EEE---------CCCCCC-----CCCCCCCCCCCC-HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCC--------C
Q ss_conf             553---------156555-----101234687255-88999998507321010356531121000110000--------1
Q gi|254780970|r  377 AWC---------EPITIP-----PSNPQLLCSDED-CTKSLLKLLSSPNLSSRRWVYEQYDTMIQSNSIQL--------P  433 (737)
Q Consensus       377 ~~~---------~~~~~~-----~~~~~~~~~~~d-~~~~l~~vL~~pnV~SK~~i~~qyD~~V~g~tv~~--------P  433 (737)
                      ...         .+....     ...+...+...+ +++.+.++|+||+|+||+||++|-||+-+|+.+|.        |
T Consensus       519 ~~~~~~dyt~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~iL~HPtVgSKe~iV~H~DR~g~GrVaQQ~GvGPlDlP  598 (1313)
T TIGR01739       519 LPLQEEDYTSASASVPVSREEPMKLDESLDWATLNVLESTIEKILSHPTVGSKEFIVRHIDRCGNGRVAQQQGVGPLDLP  598 (1313)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHH
T ss_conf             78886544357888436776651257655420147799999998148874420578756643218705872686852003


Q ss_pred             CCCCCEEEE------------------------------------------C--------CCCC--------CEEEEECC
Q ss_conf             357631420------------------------------------------3--------7776--------22797304
Q gi|254780970|r  434 GGDAGVIRV------------------------------------------E--------GHET--------KALAFSSD  455 (737)
Q Consensus       434 g~DaaVv~~------------------------------------------~--------~~~~--------~gia~s~g  455 (737)
                      ++||+++..                                          .        .+++        .|+|+++|
T Consensus       599 vsDYs~v~~~~~~~~~q~~~~~~~~~~~~~~~~~~e~a~~~~~d~~~~~~~~~~GltiqvPddn~~~~~~~~~~~~~A~G  678 (1313)
T TIGR01739       599 VSDYSLVLHNAVKSVEQSLEAEASRVTDTTEAVSSELAMRLILDPDAWLKSKEKGLTIQVPDDNEVLENPALSGVCSALG  678 (1313)
T ss_pred             HHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEEECC
T ss_conf             66699987314353223201034533566212488650222226134516666752687367776577765238999613


Q ss_pred             CCCCCHHCCCHHHHHHHHHHHHHHHHCCC----CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             53210000100113567897776410278----51022322102456668621346999999998522102886654432
Q gi|254780970|r  456 VTPRYVKADPFEGTKQAVAECWRNIIATG----AKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNV  531 (737)
Q Consensus       456 ~~p~~~~~dP~~ga~~AV~Eal~Nl~a~G----a~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkv  531 (737)
                      |+++++.+||..|+.+|++||++||.+++    .+.+.||.++-|+.  +......|++++..++|+|++|||++.-+.-
T Consensus       679 EQ~~kv~~D~~~G~~yai~EALlNL~~sP~~~Gl~~~~iT~svtw~~--~~~~~~~L~~~l~~ck~FC~~LGV~~~~~~A  756 (1313)
T TIGR01739       679 EQAYKVQLDPKRGATYAITEALLNLSLSPVLTGLEDVIITLSVTWSP--EDHVYSLLKEALRACKDFCEELGVSFTVTSA  756 (1313)
T ss_pred             CCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             22300242135668999999999987453003624247988885484--1004899999999999999749916987025


Q ss_pred             CCCCCCCCCCCC------------CCCCCCCCCCCCC-CEEEEECCCCCCCCCEEECCC-CCCCCCHHHHHHHHHCCCC-
Q ss_conf             001123686667------------6311122223335-202331021438980751377-6655432678888611678-
Q gi|254780970|r  532 SFYNETNGQSIF------------PTPTIAGVGILPD-YSLMTRIDSAHEGDLILMIGN-DGCHLDCSMYSLECASSNI-  596 (737)
Q Consensus       532 Sl~n~t~~~~I~------------pTpvi~~vG~v~d-~~~~it~~~k~~Gd~I~liG~-~~~~LggS~~~~~~~~~~~-  596 (737)
                      |-.......+.+            .+.+.++...+.. ..+.+||++|.+|+.|+++.- .+..++||+|.+.+..... 
T Consensus       757 ~~~~~~~~~~~~~~~~~~~~vl~~~~IVfsa~~~~~~~~~~~iTPdlk~~Gs~L~~l~~~~~~~laGSif~~i~~~~~~~  836 (1313)
T TIGR01739       757 ASSPTQSSRSAPTTIQRESKVLTFNSIVFSASAPVKLGSAKKITPDLKKHGSHLIWLSIHQKLTLAGSIFEQILGLSATI  836 (1313)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf             78888887888857886532430120899998741366666457554478888999942897201767999862103577


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCEEEE
Q ss_conf             99964798999999999999999598069946486579999999984589708998056668987888729883218999
Q gi|254780970|r  597 GPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYVVC  676 (737)
Q Consensus       597 g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~~d~~~~LFsEs~Gr~ii~  676 (737)
                      ..++.+++...++++.++++|++++.|.|+||||||||+++++|||++|+.|++|.+|.. ..++.++||||+|| +|||
T Consensus       837 ~~~~~~~~~~l~~ll~~~~~L~~~~~I~SgHDvSDGGL~ac~~EMAlaG~kgv~i~~P~~-~~~~~~~l~SETPG-~viE  914 (1313)
T TIGR01739       837 HRLPELSPESLKKLLKALQELVKEGVIVSGHDVSDGGLVACVAEMALAGGKGVRITLPAH-ITDPLEFLLSETPG-VVIE  914 (1313)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHCCCCC-EEEE
T ss_conf             656556889999999999877656735887543613689999999963896489971764-35568875305895-6999


Q ss_pred             ECHHHHHHHHHHHHHCCCCEEEEEEECCC----EEEEE----CCEECCHHHHHHHHHHHHHHHH
Q ss_conf             96880998999998579849998998798----68980----7412149999999999999872
Q gi|254780970|r  677 ISPENQDLVMSEANNKNIPLRYLGKVSGS----TLSIH----NILNIPVATLQTKYESWFPEFI  732 (737)
Q Consensus       677 V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~----~l~i~----~~~~~~i~~l~~~w~~~l~~~~  732 (737)
                      |.+++.+++++.++..++.+..||+|+++    .|.|.    .+++.++..++..|+....+..
T Consensus       915 V~~~~~~~v~~~l~~~~~~~~~iG~V~~~g~~~~~~v~h~~~~l~~~~L~~l~~~W~~~~~~~~  978 (1313)
T TIGR01739       915 VEPESLKEVLQFLRSEGLVAAVIGRVGEEGESSTFSVVHNSTVLFQESLSSLQGTWRSFSSEEL  978 (1313)
T ss_pred             ECCCCHHHHHHHHHHCCCCEEECCEEECCCCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHH
T ss_conf             7774088999999867971444017442579972799978826886100233411343232336


No 11 
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether).  The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00  E-value=0  Score=468.80  Aligned_cols=259  Identities=29%  Similarity=0.402  Sum_probs=237.0

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             3999995178877765888872105581022576778--74368775045787568638889988874588665430872
Q gi|254780970|r   84 DCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG--ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVP  161 (737)
Q Consensus        84 ~~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~G--a~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P  161 (737)
                      |.++||+|||||||+|+||.||+|+|++.+||++|+|  |+|+|++|+|||+++ +|...|++.++++|+++|||+||+|
T Consensus         1 ~g~a~~~~~h~~~s~idP~~Ga~~av~Ea~RNi~~~G~~a~pia~~dn~~~~~~-~p~~~~~l~~av~Gi~d~c~~l~iP   79 (272)
T cd02193           1 YGEAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAG-HPGEDAILYDAVKGVAELCNQLGLP   79 (272)
T ss_pred             CCEEEECCCCCCCCHHCHHHHHHHHHHHHHHCCHHCCCCCCEEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             942897168899041089999999999999760510888722589850366897-9318899999999999998862988


Q ss_pred             CCCCEEEEECCCCC-----------CCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             11320355215676-----------6422112211211355431122568977999657656444104666677728653
Q gi|254780970|r  162 TVGGEVEFLPCYNN-----------NIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENI  230 (737)
Q Consensus       162 ~v~G~~~~~~~y~~-----------~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~  230 (737)
                      +++|+++|+..|..           +|.+.++++|+++..+.......++||.|+++|++++++|+||++++|..+....
T Consensus        80 vvsGnvSlyn~~~~~~~~~~~~~~~~Pt~~i~~vG~i~d~~~~~~~~~~~g~~i~liG~~~~~~~lgGs~~~~~~~~~~~  159 (272)
T cd02193          80 IPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRHTLPQLSTEGNALLLIGGGKGHNGLGGTALASVALSYRQ  159 (272)
T ss_pred             EECCCCCEECEEECCCCCCCEEEEEEEEEEEEEEECCCCCCEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf             50562313000442578830168871247766752035640444777789998999915788787532689998740243


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCC
Q ss_conf             33444332679899988899987401138301103477520111223320147752899620220466789998986178
Q gi|254780970|r  231 AKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSE  310 (737)
Q Consensus       231 ~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sE  310 (737)
                       ...++||+.||+.+|++++++++++++++|.++||+|+|||++|+.||+..+++|++|||++||.++++|+|+|+||||
T Consensus       160 -~g~~~~~~~d~~~ek~~~~~~~~~i~~glI~s~HDvS~GGL~vaLaEma~~g~~G~~idL~~v~~~~~~~~~~~~lfsE  238 (272)
T cd02193         160 -LGDKSAQVRDPAQEKGFYEAMQALVAAGKLLAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDEPDMEPLEIALFE  238 (272)
T ss_pred             -CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHC
T ss_conf             -7999998689999999999999999839944886658860888899998547964999805675889998789998716


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCE
Q ss_conf             8850899995467588999888709713112212
Q gi|254780970|r  311 SQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT  344 (737)
Q Consensus       311 sQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~v  344 (737)
                      ||+||+++|+|+|+++|+++++++++.+.|||+.
T Consensus       239 sq~R~vv~V~~e~~~~~~~i~~~~~~~~~viG~~  272 (272)
T cd02193         239 SQERGVIQVRAEDRDAVEEAQYGLADCVHVLGQA  272 (272)
T ss_pred             HHHCEEEEECHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             7358299986765999999961689834882579


No 12 
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether).  The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00  E-value=0  Score=432.27  Aligned_cols=251  Identities=25%  Similarity=0.295  Sum_probs=225.9

Q ss_pred             EEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCC--CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             279730453210000100113567897776410278--510223221024566686213469999999985221028866
Q gi|254780970|r  449 ALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATG--AKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPI  526 (737)
Q Consensus       449 gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~G--a~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipi  526 (737)
                      |+||+++++|+.+++|||+||++||+||+||++|+|  ++|++++|||||++| +|+.+|+|+++++||+|+|++|++|+
T Consensus         2 g~a~~~~~h~~~s~idP~~Ga~~av~Ea~RNi~~~G~~a~pia~~dn~~~~~~-~p~~~~~l~~av~Gi~d~c~~l~iPv   80 (272)
T cd02193           2 GEAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAG-HPGEDAILYDAVKGVAELCNQLGLPI   80 (272)
T ss_pred             CEEEECCCCCCCCHHCHHHHHHHHHHHHHHCCHHCCCCCCEEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             42897168899041089999999999999760510888722589850366897-93188999999999999988629885


Q ss_pred             CCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCC--CCCCCHHHHHHHHHC-C-
Q ss_conf             54432001123686--------66763111222233352023310214389807513776--655432678888611-6-
Q gi|254780970|r  527 VSGNVSFYNETNGQ--------SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGND--GCHLDCSMYSLECAS-S-  594 (737)
Q Consensus       527 vgGkvSl~n~t~~~--------~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~--~~~LggS~~~~~~~~-~-  594 (737)
                      +||||||||+|.+.        .++|||+|+++|.++|.++. ++.++++||.|+++|.+  ..+||||.|++.... . 
T Consensus        81 vsGnvSlyn~~~~~~~~~~~~~~~~Pt~~i~~vG~i~d~~~~-~~~~~~~g~~i~liG~~~~~~~lgGs~~~~~~~~~~~  159 (272)
T cd02193          81 PVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRHT-LPQLSTEGNALLLIGGGKGHNGLGGTALASVALSYRQ  159 (272)
T ss_pred             ECCCCCEECEEECCCCCCCEEEEEEEEEEEEEEECCCCCCEE-CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf             056231300044257883016887124776675203564044-4777789998999915788787532689998740243


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC----CCCHHHHHHCCC
Q ss_conf             -789996479899999999999999959806994648657999999998458970899805666----898788872988
Q gi|254780970|r  595 -NIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEI----EKDPKPFLFGED  669 (737)
Q Consensus       595 -~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~----~~d~~~~LFsEs  669 (737)
                       ....++..|++.++++++++++++++++|.|+||+|+|||++||+||||++++|++|||+..+    ..+++..||||+
T Consensus       160 ~g~~~~~~~d~~~ek~~~~~~~~~i~~glI~s~HDvS~GGL~vaLaEma~~g~~G~~idL~~v~~~~~~~~~~~~lfsEs  239 (272)
T cd02193         160 LGDKSAQVRDPAQEKGFYEAMQALVAAGKLLAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDEPDMEPLEIALFES  239 (272)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHCH
T ss_conf             79999986899999999999999998399448866588608888999985479649998056758899987899987167


Q ss_pred             CCCEEEEECHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             32189999688099899999857984999899
Q gi|254780970|r  670 QGRYVVCISPENQDLVMSEANNKNIPLRYLGK  701 (737)
Q Consensus       670 ~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~  701 (737)
                      ++|+|++|+|++.++|++++..+++.+++||+
T Consensus       240 q~R~vv~V~~e~~~~~~~i~~~~~~~~~viG~  271 (272)
T cd02193         240 QERGVIQVRAEDRDAVEEAQYGLADCVHVLGQ  271 (272)
T ss_pred             HHCEEEEECHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             35829998676599999996168983488257


No 13 
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=100.00  E-value=0  Score=425.76  Aligned_cols=305  Identities=23%  Similarity=0.302  Sum_probs=263.0

Q ss_pred             HHCCCCCCCCCH---HH-HHHH-HHCCCCEEECCCCCEEEEEECCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             300110744588---99-9751-20697489933477368983698399999517-887776588887210558102257
Q gi|254780970|r   43 MWNEHCSYKSSK---KW-LRTL-PTTGKHVIQGPGENAGVVDIGGGDCVVFKMES-HNHPSYIEPYQGAATGVGGILRDI  116 (737)
Q Consensus        43 ~wSEHC~~k~~~---~~-l~~~-~~~~~~vi~~~~~~a~vi~~~~~~~~~~k~Et-HNhPs~i~P~~GAaTg~gG~iRDi  116 (737)
                      ...+-|+||.--   .| +++. ++-..+|+.+||||||||+++++..+++++|+ ||||++++||+|+.+++.+++|||
T Consensus        10 ~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~vvgpGdDAavi~i~~~~~~~~~~d~~~~~~~~~dPy~gG~~aVa~~v~DI   89 (323)
T TIGR03267        10 RSFEGVTRKHPIKDVVEILEPLDVTYEGNVIVDFGDDAAAIKIGGDDILLLAADGIWGKLLDADPWWAGYCAVLVNVNDI   89 (323)
T ss_pred             HHCCCCHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             74878310059899999986433455887542479860699878985899997677887514697898999999998889


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCC
Q ss_conf             67787436877504578756863888998887458866543087211320355215676642211221121135543112
Q gi|254780970|r  117 FTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSK  196 (737)
Q Consensus       117 ~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~  196 (737)
                      ++|||+|+|++|+|+|++|+      .+.++++|++++++++|+|+|||+|.++..|..   ++++++|+++.+++++..
T Consensus        90 aamGA~Pla~ld~L~~~~pe------~~~~i~~Gi~~a~~~~gvpvVGG~t~~~~~~~~---v~v~vvGiv~~~~~i~~~  160 (323)
T TIGR03267        90 AAMGGKPVGMVNVLSINDVD------VCREVLEGMREGAWKFGVPVVGGHTHPDTPYNA---LDVAIVGIAKEDCIIRSD  160 (323)
T ss_pred             HHHCCCHHHHHHHHCCCCHH------HHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCE---EEEEEEEEECCCCEEECC
T ss_conf             98087618863022679878------999999999999987499776673456888770---589999987411145447


Q ss_pred             CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHH
Q ss_conf             25689779996576564441046666777286533344433267989998889998740113830110347752011122
Q gi|254780970|r  197 ARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSA  276 (737)
Q Consensus       197 ~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~  276 (737)
                      .+++||.|++.|+.+|+.+..      ..+..+      ..+..+|+..|..+++++++.+++++++|||+++|||++++
T Consensus       161 ~a~~GD~ii~~~~l~g~~~~~------~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~lv~a~~DiS~gGL~~~l  228 (323)
T TIGR03267       161 TAKPGDLIIFAIDLDGRPYPS------FPLNWD------TTTMKSPDYLRAQMDAVVEIAERKLVKAGKDISNPGLIGTL  228 (323)
T ss_pred             CCCCCCEEEEEECCCCCCCCC------CCCCCC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             899999999996467611645------534431------01346747778889989999986678766412647167799


Q ss_pred             HHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCC
Q ss_conf             33201477528996202204667899989861788850899995467588999888709713112212104431000258
Q gi|254780970|r  277 IEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRG  356 (737)
Q Consensus       277 ~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g  356 (737)
                      .||+.+|++|++|++++||. .+++++.+.+.+|+|+||+++|+|++.++++++++++++++++||+||+++++++++++
T Consensus       229 ~em~~~s~~Ga~I~l~~iP~-~~~~~~~~~l~~~~~~~~l~tv~~~~~~~i~~~~~~~gi~~~vIG~Vt~~~~l~l~~~~  307 (323)
T TIGR03267       229 GMLLEASRVGAEVDLESIPK-PEDVDMVTWLKMYPGSGFVLTADPENVREIVRVLEDAGLTASVIGEVIEDGKLYVSDGD  307 (323)
T ss_pred             HHHHHHCCCCEEEEHHHCCC-CCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECC
T ss_conf             99986448837997531888-88999999998489983899986503999999999879988999999759829999899


Q ss_pred             CC--CCCCCCCCCCC
Q ss_conf             64--43443210146
Q gi|254780970|r  357 EE--VANLPIKALSD  369 (737)
Q Consensus       357 ~~--v~dlp~~~L~~  369 (737)
                      +.  +.|++.+++.+
T Consensus       308 e~~v~~d~~~~~~~g  322 (323)
T TIGR03267       308 ESAVVFDFRKDRITG  322 (323)
T ss_pred             CCEEEEECCCCCCCC
T ss_conf             018998877556568


No 14 
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=100.00  E-value=0  Score=382.03  Aligned_cols=295  Identities=22%  Similarity=0.253  Sum_probs=239.1

Q ss_pred             CHHHHHHHHHHCCCC------CCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHH
Q ss_conf             588999998507321------01035653112100011000013576314203777622797304532100001001135
Q gi|254780970|r  397 DCTKSLLKLLSSPNL------SSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTK  470 (737)
Q Consensus       397 d~~~~l~~vL~~pnV------~SK~~i~~qyD~~V~g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~  470 (737)
                      |+.+...++.+++-+      +.++|+|+|||++|+++|+++||+||||+++++ +...++++.+++++++++|||.+|+
T Consensus         1 ~~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~vvgpGdDAavi~i~~-~~~~~~~~d~~~~~~~~~dPy~gG~   79 (323)
T TIGR03267         1 NLRELARELRSFEGVTRKHPIKDVVEILEPLDVTYEGNVIVDFGDDAAAIKIGG-DDILLLAADGIWGKLLDADPWWAGY   79 (323)
T ss_pred             CHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEECC-CCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf             978999999748783100598999999864334558875424798606998789-8589999767788751469789899


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             67897776410278510223221024566686213469999999985221028866544320011236866676311122
Q gi|254780970|r  471 QAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAG  550 (737)
Q Consensus       471 ~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~  550 (737)
                      .||++++|||+||||+|+++++||+|++|+   .   +.+.++||.++|++||+|++||++++...      .+++.+++
T Consensus        80 ~aVa~~v~DIaamGA~Pla~ld~L~~~~pe---~---~~~i~~Gi~~a~~~~gvpvVGG~t~~~~~------~~~v~v~v  147 (323)
T TIGR03267        80 CAVLVNVNDIAAMGGKPVGMVNVLSINDVD---V---CREVLEGMREGAWKFGVPVVGGHTHPDTP------YNALDVAI  147 (323)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCCHH---H---HHHHHHHHHHHHHHCCCCEECCCCCCCCC------CCEEEEEE
T ss_conf             999999888998087618863022679878---9---99999999999987499776673456888------77058999


Q ss_pred             CCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             22333520233102143898075137766554326788886116789996479899999999999999959806994648
Q gi|254780970|r  551 VGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDIS  630 (737)
Q Consensus       551 vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiS  630 (737)
                      +|.++. .+.++...+++||.|++.+....+.+.+...    .  .......+.+.++...+.+.++++++++.||||+|
T Consensus       148 vGiv~~-~~~i~~~~a~~GD~ii~~~~l~g~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~l~~~~lv~a~~DiS  220 (323)
T TIGR03267       148 VGIAKE-DCIIRSDTAKPGDLIIFAIDLDGRPYPSFPL----N--WDTTTMKSPDYLRAQMDAVVEIAERKLVKAGKDIS  220 (323)
T ss_pred             EEEECC-CCEEECCCCCCCCEEEEEECCCCCCCCCCCC----C--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             998741-1145447899999999996467611645534----4--31013467477788899899999866787664126


Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEECCCC---CCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC-E
Q ss_conf             657999999998458970899805666---898788872988321899996880998999998579849998998798-6
Q gi|254780970|r  631 TGGLIITLAEMTISSAKGMDIILPIEI---EKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS-T  706 (737)
Q Consensus       631 dGGL~~aL~EMa~as~~G~~I~L~~~~---~~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~-~  706 (737)
                      +|||+.+|.|||.+|++|++|+++..+   ..++.++||+|+++||+++|++++.+++++++++.++++++||+||++ .
T Consensus       221 ~gGL~~~l~em~~~s~~Ga~I~l~~iP~~~~~~~~~~l~~~~~~~~l~tv~~~~~~~i~~~~~~~gi~~~vIG~Vt~~~~  300 (323)
T TIGR03267       221 NPGLIGTLGMLLEASRVGAEVDLESIPKPEDVDMVTWLKMYPGSGFVLTADPENVREIVRVLEDAGLTASVIGEVIEDGK  300 (323)
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEHHHCCCCCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCE
T ss_conf             47167799999864488379975318888899999999848998389998650399999999987998899999975982


Q ss_pred             EEEEC
Q ss_conf             89807
Q gi|254780970|r  707 LSIHN  711 (737)
Q Consensus       707 l~i~~  711 (737)
                      +.+.+
T Consensus       301 l~l~~  305 (323)
T TIGR03267       301 LYVSD  305 (323)
T ss_pred             EEEEE
T ss_conf             99998


No 15 
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II; InterPro: IPR010074   Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most bacteria. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=375.17  Aligned_cols=305  Identities=24%  Similarity=0.409  Sum_probs=258.2

Q ss_pred             CHHHH-HHHHHC-CCCEEECCCC---------CEEEEEECCCE----EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88999-751206-9748993347---------73689836983----999995178877765888872105581022576
Q gi|254780970|r   53 SKKWL-RTLPTT-GKHVIQGPGE---------NAGVVDIGGGD----CVVFKMESHNHPSYIEPYQGAATGVGGILRDIF  117 (737)
Q Consensus        53 ~~~~l-~~~~~~-~~~vi~~~~~---------~a~vi~~~~~~----~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~  117 (737)
                      ||.|+ +|+..+ .=++|+.||+         ||+||++.+..    .|++|.+.-=-=++++||.||+.-|.=.+|+++
T Consensus       417 sK~wvY~QYDheVq~rTVvkPG~G~~N~ETH~DAAVlr~~~~~~~~~glA~t~D~NPr~~~~dPy~Ga~~~vaEa~RNLa  496 (763)
T TIGR01736       417 SKEWVYRQYDHEVQTRTVVKPGEGKMNKETHADAAVLRIKETGKLDKGLALTADCNPRYVYLDPYAGAAAAVAEAYRNLA  496 (763)
T ss_pred             HCCCEEEEECEEECCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEECHHHHHHHHHHHHHHCEE
T ss_conf             15413765110673257760788877741115413466405687752789970787660331603558897774311256


Q ss_pred             CCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-------CCCCCEEEECCCC-H
Q ss_conf             7787436877504578756863888998887458866543087211320355215676-------6422112211211-3
Q gi|254780970|r  118 TMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNN-------NIIVNTFAAGIAK-T  189 (737)
Q Consensus       118 ~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~-------~~~v~~~~~Gi~~-~  189 (737)
                      |+||+|+|++||||||||++|+.+|+|.++++|+++.|..|++|+|||||||+..|++       +|.|.++.+|+++ .
T Consensus       497 ~vGA~PLa~vDcLNFGNPErPEvywQf~~~v~Gl~daa~~l~~PVVgGNVSLYNE~~~~~~~~~i~PTP~i~~VG~~~Dv  576 (763)
T TIGR01736       497 AVGAEPLAIVDCLNFGNPERPEVYWQFVEAVKGLGDAARALGTPVVGGNVSLYNETNGEDAKVPIAPTPTIGMVGLVEDV  576 (763)
T ss_pred             EECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCEECCCCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf             40875488884056898887036789999999999999863889882110002310378724353785158999884274


Q ss_pred             HHHHH-CCCCCCCCEEEEECCCCCC-CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCC
Q ss_conf             55431-1225689779996576564-441046666777286533344433267989998889998740113830110347
Q gi|254780970|r  190 NAIFS-SKARGIGLPLVYLGAKTGR-DGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDM  267 (737)
Q Consensus       190 ~~~~~-~~~~~~Gd~ii~~G~~tg~-dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~  267 (737)
                      +++.+ ...++.||.|+++|.+  + +.|||+-.....++.... ..|+|   |...||++.|++++++++++|.++||+
T Consensus       577 ~~~~~~~~~~~~Gd~~~l~Get--~~~ElGGS~Y~~~~~g~~~G-~~P~v---Dl~~e~~~~d~v~~~i~~g~v~~ahDv  650 (763)
T TIGR01736       577 EKLLTSLNFKKEGDAIYLIGET--KKDELGGSEYLKVVHGIVSG-QVPAV---DLEEEKELADAVREAIREGLVSAAHDV  650 (763)
T ss_pred             CCCCCCCHHHHCCCEEEEECCC--CCCCCCHHHHHHHHCCCCCC-CCCCC---CHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             2125642054479769993143--23666476787777884478-68887---868889999999999740682055443


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCH-HHHHHHHHHHCCEEECCCCEEE
Q ss_conf             752011122332014775289962022046678999898617888508999954675-8899988870971311221210
Q gi|254780970|r  268 GAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQ-HKAQEILNKWGLHFSIIGITTN  346 (737)
Q Consensus       268 gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~-~~~~~i~~~~~~~~~~iG~vt~  346 (737)
                      |.|||+.||+||+..+|+|++|++++++-.  ...+.+.||||||.|++++|+.++. .+..+.|+..++++.+||+.|.
T Consensus       651 S~GGLAvaLAem~~~~G~Ga~~~~~~~~~~--~~r~~~~LFSEs~gR~iv~~~~~~~v~~~~~ff~~~~~~a~~~G~~~~  728 (763)
T TIGR01736       651 SRGGLAVALAEMAIASGIGAEVDIDEIASE--TARADELLFSESNGRAIVAVREEKAVEEAVKFFESKGVPAKVIGEKTG  728 (763)
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEECCCCCC--HHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf             352389999999974486259972578850--000268870677886699957979999999873123650677747864


Q ss_pred             CCCCCCCCCCC--CCCCCCCC
Q ss_conf             44310002586--44344321
Q gi|254780970|r  347 DKLFRVIHRGE--EVANLPIK  365 (737)
Q Consensus       347 ~~~~~v~~~g~--~v~dlp~~  365 (737)
                      ..++++...+.  ..+++.++
T Consensus       729 ~~~~~~~~~~~~~~~~~~~~~  749 (763)
T TIGR01736       729 GEKLTIKTGDFKLDEISVSVK  749 (763)
T ss_pred             CCEEEEEECCCEEEEEEECHH
T ss_conf             863798516730344320178


No 16 
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00  E-value=0  Score=346.70  Aligned_cols=257  Identities=25%  Similarity=0.389  Sum_probs=223.4

Q ss_pred             CEEEEEEC--CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC-HHHHHHHHHHH
Q ss_conf             73689836--9839999951788777658888721055810225767787436877504578756863-88899888745
Q gi|254780970|r   74 NAGVVDIG--GGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPK-TKHLLSGVVAG  150 (737)
Q Consensus        74 ~a~vi~~~--~~~~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~-~~~~~~~~~~G  150 (737)
                      ||+|+++.  .+..+++++..+.+.+.++||.||+++|++.+||++++||+|+++++++||++|++|+ .+|++.++++|
T Consensus         1 da~V~~~~~~~~~g~a~s~g~~p~~~~~dP~~ga~~aV~Ea~rni~~~Ga~p~ai~~~lnf~~p~~~~~~~~~l~~av~g   80 (264)
T cd02204           1 DAAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLAITDCLNFGNPEKPEGEMGQLVEAVLG   80 (264)
T ss_pred             CCEEEEECCCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCHHHHEECHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             95599863899859999747999614348999999999999988752698389951001102877785078889999999


Q ss_pred             HHHHHHHCCCCCCCCEEEEECCCCC---CCCCCEEEECCCCH-HHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             8866543087211320355215676---64221122112113-5543112256897799965765644410466667772
Q gi|254780970|r  151 IAGYSNSFGVPTVGGEVEFLPCYNN---NIIVNTFAAGIAKT-NAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEF  226 (737)
Q Consensus       151 ~~~ygN~~G~P~v~G~~~~~~~y~~---~~~v~~~~~Gi~~~-~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~  226 (737)
                      +++|++++|+|+|+|+++|+..+..   +|.+.++++|+++. +..++...+++||.|+++|.++++.  +|+.++...+
T Consensus        81 ~~~~~~~lgiP~v~G~~Sl~n~~~~~~ippTlvi~~vg~v~~~~~~~t~~~k~~g~~i~lig~~~~~~--ggs~~~~~~~  158 (264)
T cd02204          81 LGDACRALGTPVIGGKDSLYNETEGVAIPPTLVIGAVGVVDDVRKIVTLDFKKEGDLLYLIGETKDEL--GGSEYALAYH  158 (264)
T ss_pred             HHHHHHHCCCCEECCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEHHHHCCCCCEEEEECCCCCCC--CCCHHHHHHC
T ss_conf             99999970996203446651466786678852899997325730024154347998799957884557--8779999970


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHH
Q ss_conf             86533344433267989998889998740113830110347752011122332014775289962022046678999898
Q gi|254780970|r  227 GENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEM  306 (737)
Q Consensus       227 ~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei  306 (737)
                      +..    ...++..||+.+|++++++++++++++|.++||+|+|||++++.||+..+++|++|+|++++      +++|+
T Consensus       159 ~~~----~~~~~~~d~~~~k~~~~~i~~l~~~~li~s~hDvS~GGL~~al~EMa~~~~~G~~i~l~~~~------~~~~~  228 (264)
T cd02204         159 GLG----GGAPPLVDLEREKALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDD------AEDEL  228 (264)
T ss_pred             CCC----CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCC------CHHHH
T ss_conf             878----89856589999999999998998659612787678781999999998428965999838999------82575


Q ss_pred             HHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCE
Q ss_conf             61788850899995467588999888709713112212
Q gi|254780970|r  307 MLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT  344 (737)
Q Consensus       307 ~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~v  344 (737)
                      |+||+|+||+++|++++.+.|+  ++.+++++.+||+|
T Consensus       229 LFsEs~gr~vv~v~~~~~~~~~--~~~~~v~~~~IG~v  264 (264)
T cd02204         229 LFSESLGRVLVEVKPENEEVFE--AEEAGVPATVIGTV  264 (264)
T ss_pred             EECCCCCEEEEEECCCHHHHHH--HHHCCCCEEEEEEC
T ss_conf             0378888699998724299999--98889996998769


No 17 
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00  E-value=2.8e-45  Score=329.78  Aligned_cols=265  Identities=20%  Similarity=0.267  Sum_probs=217.3

Q ss_pred             HHHHHHHHCCCCEEECCCCCEEEEEECCCEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf             999751206974899334773689836983999995178-8777658888721055810225767787436877504578
Q gi|254780970|r   55 KWLRTLPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESH-NHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFG  133 (737)
Q Consensus        55 ~~l~~~~~~~~~vi~~~~~~a~vi~~~~~~~~~~k~EtH-NhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g  133 (737)
                      .+|+.+|+.++.|+.|+||||+|+++++++ ++++.+++ .++...+||.++.+++.+++|||++|||+|++++++|.++
T Consensus        18 ~~l~~~~~~~~~V~~giGDDaAVi~~~~~~-~v~~td~~~~~~~~~dP~~~G~~ava~nlsDIaAMGa~P~~~l~~l~~p   96 (283)
T cd02192          18 AILPDAPFDSLGVAADLGDDAAAIPDGDGY-LLLAADGIWPSLVEADPWWAGYCSVLVNVSDIAAMGGRPLAMVDALWSP   96 (283)
T ss_pred             HHCCCCCCCCCCCCCCCCCCEEEEEECCCE-EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf             863338998888575799765899708974-9999785468876679799999999988888987077679886442589


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf             75686388899888745886654308721132035521567664221122112113554311225689779996576564
Q gi|254780970|r  134 AIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGR  213 (737)
Q Consensus       134 ~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~  213 (737)
                      +.      ..++++.+|++++++++|+|+|||+|.++..|   +.+.+.++|+++.+.+.+. ..++||.|++.|..+|+
T Consensus        97 ~~------e~~~~i~~Gi~~~~~~~gv~lVGGdT~~~~~~---~~i~vt~~G~~~~~~~~~~-gAk~GD~i~vt~~l~g~  166 (283)
T cd02192          97 SA------EAAAQVLEGMRDAAEKFGVPIVGGHTHPDSPY---NALSVAILGRARKDLLISF-GAKPGDRLILAIDLDGR  166 (283)
T ss_pred             CH------HHHHHHHHHHHHHHHHCCCCEECCCCCCCCCC---CEEEEEEEEECCCCCEECC-CCCCCCEEEEEEECCCC
T ss_conf             88------99999999999999875985765544567888---7368999974077743227-89999989999866753


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHH
Q ss_conf             44104666677728653334443326798999888999874011383011034775201112233201477528996202
Q gi|254780970|r  214 DGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDK  293 (737)
Q Consensus       214 dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~  293 (737)
                      .  ++..    ....+      +.+..++..-|..++.+.++.+++++++|||+++|||.+++.||+++|++|++|++++
T Consensus       167 ~--~~~~----~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~A~~DiSdgGL~~~l~eia~aSgvGa~I~~~~  234 (283)
T cd02192         167 V--HPSP----PPNWD------ATTMKSPALLRRQIALLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAEIDLDA  234 (283)
T ss_pred             C--CCCC----CCCCC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             0--5344----23423------1012467777768899999998647888862131127889999999769809997023


Q ss_pred             HCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCC
Q ss_conf             20466789998986178885089999546758899988870971311221
Q gi|254780970|r  294 VPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGI  343 (737)
Q Consensus       294 vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~  343 (737)
                      ||+ .+++.+.+.|.+|+|+||+++|+|++.++++++|+++++++++|||
T Consensus       235 iP~-~~~~~~~~~L~~~~~~~ll~tv~pe~~~~v~~~~~~~gv~~~~IGE  283 (283)
T cd02192         235 IPR-PEGVDLERWLKCFPGFGFLLTARPENADEVVAVFAAVGITAAVIGE  283 (283)
T ss_pred             CCC-CCCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             878-8999989998719986159998851399999999986998898395


No 18 
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00  E-value=4.8e-44  Score=320.93  Aligned_cols=289  Identities=26%  Similarity=0.423  Sum_probs=242.7

Q ss_pred             CCCEEECCCCCEEEEEECC-CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHH
Q ss_conf             9748993347736898369-839999951788777658888721055810225767787436877504578756863888
Q gi|254780970|r   64 GKHVIQGPGENAGVVDIGG-GDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKH  142 (737)
Q Consensus        64 ~~~vi~~~~~~a~vi~~~~-~~~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~  142 (737)
                      +-.+++.|+-||+|+++.+ ...+++.+.-.-.-+.++||.||.--|.-.+|++.++||+|+|++|+||||+|++|+.+|
T Consensus       429 ~g~TV~~P~~DaaVi~i~~s~~g~a~s~g~~p~~~~~dP~~ga~~aV~Ea~rNlva~Ga~plai~d~lnfgnPe~pe~~~  508 (736)
T PRK01213        429 QGNTVVKPGGDAAVVRIEGTGKGLAMTTDCNPRYVYLDPYEGAKLAVAEAYRNVAAVGAEPLAITDCLNFGNPEKPEVMW  508 (736)
T ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHH
T ss_conf             47713468987179985589758999558785152069999999999999977886178613221253238977877878


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC---CCCCCEEEECCC-CHHHHHHCCCCCCCCEEEEECCCCCCCCCHH
Q ss_conf             998887458866543087211320355215676---642211221121-1355431122568977999657656444104
Q gi|254780970|r  143 LLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNN---NIIVNTFAAGIA-KTNAIFSSKARGIGLPLVYLGAKTGRDGIGG  218 (737)
Q Consensus       143 ~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~---~~~v~~~~~Gi~-~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~G  218 (737)
                      .|.++++|+++++-++|+|+++|++++...+.+   +|.+.+.++|.+ +.++.++...+++||.|+++|.  .++.+||
T Consensus       509 ~l~~av~g~~dac~~l~ipvv~GkdSlyne~~~~~I~PTpvI~~vg~v~Dv~~~vt~~~k~~g~~i~lig~--~~~~LGG  586 (736)
T PRK01213        509 QFVEAVRGIAEACRALGTPVVGGNVSLYNETNGTAIYPTPVIGMVGLIDDVTKAITSGFKEEGDLIYLLGE--TKGELGG  586 (736)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEEEEEEECCHHCCCCCCCCCCCEEEEECC--CCCCCCC
T ss_conf             89999999999999819996757537736669935787515998777506000237333578974999717--8776562


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCC
Q ss_conf             66667772865333444332679899988899987401138301103477520111223320147752899620220466
Q gi|254780970|r  219 ASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE  298 (737)
Q Consensus       219 a~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~  298 (737)
                      +.++...++... ...|.|   |+..+|++.+++.+++++++|.++||++.|||+.|+.||+..+++|++|+|+.     
T Consensus       587 S~~~~~~~~~~~-~~~P~v---d~~~~~~~~~~i~~li~~~~I~s~HDiSdGGL~~aLaEMaf~~~~G~~i~l~~-----  657 (736)
T PRK01213        587 SEYLKVVHGRVG-GRPPAV---DLAAEKRLGELLREAIRAGLVSSAHDVSDGGLAVALAEMAIASGLGATVDLSS-----  657 (736)
T ss_pred             CHHHHHHHCCCC-CCCCCC---CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCC-----
T ss_conf             199999727558-989987---99999999999999997798699988861589999999985699737996288-----


Q ss_pred             CCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             789998986178885089999546758899988870971311221210443100025864434432101
Q gi|254780970|r  299 EGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKAL  367 (737)
Q Consensus       299 ~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~v~dlp~~~L  367 (737)
                      ...++.++||||+|.|+++.|++++.++|++++++.++++.+||+|+++..+.    ++.+++++++-|
T Consensus       658 ~~~~~~~~LFsE~~gr~vveV~~~~~~~~~~~~~~~gi~~~~IG~v~~~~~i~----~~~~~~~~~~eL  722 (736)
T PRK01213        658 DGGRPDALLFSESQGRYVVSVPPENEEAFEELAEALGVPATVIGVVGGDDAVL----GQGLISLSVEEL  722 (736)
T ss_pred             CCCCHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCEEE----CCCCEEEEHHHH
T ss_conf             88876776128888659999858899999999987799889988998855395----177224159999


No 19 
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00  E-value=1.4e-42  Score=310.84  Aligned_cols=260  Identities=23%  Similarity=0.364  Sum_probs=226.5

Q ss_pred             CEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC--------HHHHHHHHHHHHHHHH
Q ss_conf             22797304532100001001135678977764102785102232210245666862--------1346999999998522
Q gi|254780970|r  448 KALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEE--------IMGQFVHSVKGIREAC  519 (737)
Q Consensus       448 ~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e--------~~~ql~~av~gl~d~c  519 (737)
                      .++++++....+.+.++||.||+..|+..+||+.+|||+|++++++|||++|+.++        .+|.+.++++|+++++
T Consensus        26 ~~~~~k~EsHNhPSai~Py~GAaTGvGGiiRDi~~~GA~pia~~d~l~fG~~~~~~~~~~~~~~~~~i~~~vv~GisdyG  105 (313)
T cd02203          26 WAVVFKVETHNHPSAIEPFGGAATGVGGIIRDILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGVVAGISDYG  105 (313)
T ss_pred             HEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHCC
T ss_conf             70288834678988678878501045630025456686677765465206998876555456689899877513566538


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCC--CCCCCHHHHHHHHHCC---
Q ss_conf             10288665443200112368666763111222233352023310214389807513776--6554326788886116---
Q gi|254780970|r  520 QILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGND--GCHLDCSMYSLECASS---  594 (737)
Q Consensus       520 ~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~--~~~LggS~~~~~~~~~---  594 (737)
                      +.+|+|+++|.++||..+..   +|.+.++++|.++. +++++...+++||+|+++|..  +..++|+.++......   
T Consensus       106 N~~GvP~v~G~~~f~~~y~~---nPlv~~~~vG~v~~-~~~~~~~~~~~G~~iv~vGg~tgrdGigGasfsS~~~~~~~~  181 (313)
T cd02203         106 NCIGIPTVGGEVRFDPSYYG---NPLVNVGCVGIVPK-DHIVKSKAPGPGDLVVLVGGRTGRDGIGGATFSSKELSENSS  181 (313)
T ss_pred             CCCCCCEEEEEEEECCCCCC---CCEEEEEEEEEEEH-HHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHCCCCC
T ss_conf             65576235579998665467---84378754775337-770256689999889999078666652210354032046643


Q ss_pred             --CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC----CCCHHHHHHCC
Q ss_conf             --789996479899999999999999959806994648657999999998458970899805666----89878887298
Q gi|254780970|r  595 --NIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEI----EKDPKPFLFGE  668 (737)
Q Consensus       595 --~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~----~~d~~~~LFsE  668 (737)
                        ....++.-|+..+|++++++++++++++|.|+||++.|||+.++.|||+.+++|++|+|+..+    ..+|++.||||
T Consensus       182 ~~~~~aVQ~gdP~~ek~l~e~~le~~~~~li~~ihD~GaGGl~~a~~Ema~~~~~G~~i~Ld~vp~~~~~m~p~Eil~SE  261 (313)
T cd02203         182 ELDRPAVQVGDPFMEKKLQEAILEARETGLIVGIQDLGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREPGMSPWEIWISE  261 (313)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHEEEEC
T ss_conf             34655432286688889999999888549868888658850654237776148973999903470577999864713305


Q ss_pred             CCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC-EEEEEC
Q ss_conf             8321899996880998999998579849998998798-689807
Q gi|254780970|r  669 DQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS-TLSIHN  711 (737)
Q Consensus       669 s~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~-~l~i~~  711 (737)
                      +|.|++++|++++.++|++++++.++++.+||+||++ .+.+..
T Consensus       262 SQERm~~~v~~~~~~~~~~i~~k~~~~~~vIG~vt~~~~~~v~~  305 (313)
T cd02203         262 SQERMLLVVPPEDLEEFLAICKKEDLEAAVIGEVTDDGRLRLYY  305 (313)
T ss_pred             CHHCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEE
T ss_conf             61108999886469999999998799979999993698699999


No 20 
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00  E-value=2.8e-40  Score=295.05  Aligned_cols=274  Identities=24%  Similarity=0.385  Sum_probs=217.7

Q ss_pred             HHHHHHHHHCCCCEEECC--CCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf             899975120697489933--477368983698399999517887776588887210558102257677874368775045
Q gi|254780970|r   54 KKWLRTLPTTGKHVIQGP--GENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLR  131 (737)
Q Consensus        54 ~~~l~~~~~~~~~vi~~~--~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~  131 (737)
                      |..++.++++.++|+.||  ||||+|+++++++.+ +    |++|...+||..+...+...++||.+|||+|+++++++.
T Consensus        12 ~~~~~~l~~~~~~v~vg~~~gdDaavi~~~~~~lv-v----ttDp~~~~~~~~G~~ava~~~sDI~amGa~P~~~l~~l~   86 (298)
T cd06061          12 RLILKNLGADRDEVLVGPGGGEDAAVVDFGGKVLV-V----STDPITGAGKDAGWLAVHIAANDIATSGARPRWLLVTLL   86 (298)
T ss_pred             HHHHHHCCCCCCCEEECCCCCCEEEEEEECCCEEE-E----ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHEE
T ss_conf             99861279999888778999852599986898799-9----848830581369999999879999985998288761211


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf             78756863888998887458866543087211320355215676642211221121135543112256897799965765
Q gi|254780970|r  132 FGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKT  211 (737)
Q Consensus       132 ~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~t  211 (737)
                      |+....   ...+.++++|++++++++|+|+|||+|.+.+.... +.+.+.++|+++.+.+.+....++||.|++.|   
T Consensus        87 ~p~~~~---~~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~~~-~~i~~t~~G~~~~~~~~~~~~ak~GD~Iiltg---  159 (298)
T cd06061          87 LPPGTD---EEELKAIMREINEAAKELGVSIVGGHTEVTPGVTR-PIISVTAIGKGEKDKLVTPSGAKPGDDIVMTK---  159 (298)
T ss_pred             CCCCCC---HHHHHHHHHHHHHHHHHHCCCEECCEEEECCCCCC-CEEEEEEEEEECCCCEECCCCCCCCCEEEEEC---
T ss_conf             889999---99999999999999998399564431586478777-67999999995688663067799999999989---


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCC--CCCCCH-HHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEE
Q ss_conf             6444104666677728653334443--326798-9998889998740113830110347752011122332014775289
Q gi|254780970|r  212 GRDGIGGASMASEEFGENIAKKRPT--VQVGDP-FTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGIT  288 (737)
Q Consensus       212 g~dGi~Ga~~sS~~~~~~~~~~~~~--VQ~gdp-~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~  288 (737)
                       ..|++|+.+.+..+.+........  .+.... +....+++..+ +..+..+++|||+++|||++++.||+.++++|++
T Consensus       160 -~~G~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~a~~Dis~gGL~~~L~e~~~~s~vg~~  237 (298)
T cd06061         160 -GAGIEGTAILANDFEEELKKRLSEEELREAAKLFYKISVVKEAL-IAAEAGVTAMHDATEGGILGALWEVAEASGVGLR  237 (298)
T ss_pred             -CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHH-HHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEE
T ss_conf             -84076899999870665523467588998787540222399999-7510575598716755277789999974697499


Q ss_pred             EEEHHHCCCCC--------CCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCE
Q ss_conf             96202204667--------899989861788850899995467588999888709713112212
Q gi|254780970|r  289 LDLDKVPTCEE--------GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT  344 (737)
Q Consensus       289 i~l~~vp~~~~--------~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~v  344 (737)
                      |+++++|+.++        +++||++..   +++|+++|+|++.+++.++++++++++++||+|
T Consensus       238 I~~~~iPi~~~~~~~~~~~~~dp~~~~~---~G~ll~~v~~~~~~~v~~~l~~~g~~a~vIGeV  298 (298)
T cd06061         238 IEKDKIPIRQETKEICEALGIDPLRLIS---SGTLLITVPPEKGDELVDALEEAGIPASVIGKI  298 (298)
T ss_pred             EEECCCCCCHHHHHHHHHCCCCHHHHHH---CCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             9775468887999999974978888970---887999998899999999999649796999869


No 21 
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00  E-value=2.9e-37  Score=274.40  Aligned_cols=252  Identities=23%  Similarity=0.237  Sum_probs=197.7

Q ss_pred             CCCCCCCCCCCCEEEECCCCCCEEEEECC-CCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHH
Q ss_conf             11000013576314203777622797304-53210000100113567897776410278510223221024566686213
Q gi|254780970|r  427 SNSIQLPGGDAGVIRVEGHETKALAFSSD-VTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIM  505 (737)
Q Consensus       427 g~tv~~Pg~DaaVv~~~~~~~~gia~s~g-~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~  505 (737)
                      -+..+.||+||||+++..  +. +++++| ..|++...|||.+|+.+|+.+++||+||||+|+++++++.++++   +. 
T Consensus        28 ~~V~~giGDDaAVi~~~~--~~-~v~~td~~~~~~~~~dP~~~G~~ava~nlsDIaAMGa~P~~~l~~l~~p~~---e~-  100 (283)
T cd02192          28 LGVAADLGDDAAAIPDGD--GY-LLLAADGIWPSLVEADPWWAGYCSVLVNVSDIAAMGGRPLAMVDALWSPSA---EA-  100 (283)
T ss_pred             CCCCCCCCCCEEEEEECC--CE-EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCH---HH-
T ss_conf             885757997658997089--74-999978546887667979999999998888898707767988644258988---99-


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHH
Q ss_conf             46999999998522102886654432001123686667631112222333520233102143898075137766554326
Q gi|254780970|r  506 GQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCS  585 (737)
Q Consensus       506 ~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS  585 (737)
                        +.+.++|+.++|+++|+|++||+.++      .+.+++..++++|.++.  ..++...+++||.|++++.......++
T Consensus       101 --~~~i~~Gi~~~~~~~gv~lVGGdT~~------~~~~~~i~vt~~G~~~~--~~~~~~gAk~GD~i~vt~~l~g~~~~~  170 (283)
T cd02192         101 --AAQVLEGMRDAAEKFGVPIVGGHTHP------DSPYNALSVAILGRARK--DLLISFGAKPGDRLILAIDLDGRVHPS  170 (283)
T ss_pred             --HHHHHHHHHHHHHHCCCCEECCCCCC------CCCCCEEEEEEEEECCC--CCEECCCCCCCCEEEEEEECCCCCCCC
T ss_conf             --99999999999987598576554456------78887368999974077--743227899999899998667530534


Q ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC---CCCHH
Q ss_conf             788886116789996479899999999999999959806994648657999999998458970899805666---89878
Q gi|254780970|r  586 MYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEI---EKDPK  662 (737)
Q Consensus       586 ~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~---~~d~~  662 (737)
                      .      ..........+....+.....+.++..+++++||||+|+|||+.+|.|||.+|++|++|+++..+   ..++.
T Consensus       171 ~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~A~~DiSdgGL~~~l~eia~aSgvGa~I~~~~iP~~~~~~~~  244 (283)
T cd02192         171 P------PPNWDATTMKSPALLRRQIALLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAEIDLDAIPRPEGVDLE  244 (283)
T ss_pred             C------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHH
T ss_conf             4------2342310124677777688999999986478888621311278899999997698099970238788999989


Q ss_pred             HHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             887298832189999688099899999857984999899
Q gi|254780970|r  663 PFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGK  701 (737)
Q Consensus       663 ~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~  701 (737)
                      .+|+++++++++++|+|++.+++++++++.|+++++|||
T Consensus       245 ~~L~~~~~~~ll~tv~pe~~~~v~~~~~~~gv~~~~IGE  283 (283)
T cd02192         245 RWLKCFPGFGFLLTARPENADEVVAVFAAVGITAAVIGE  283 (283)
T ss_pred             HHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             998719986159998851399999999986998898395


No 22 
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=100.00  E-value=8.9e-37  Score=271.09  Aligned_cols=302  Identities=20%  Similarity=0.371  Sum_probs=244.0

Q ss_pred             HHHHHHHCCCCC-CCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             035653112100-0110000135763142037776227973045321000010011356789777641027851022322
Q gi|254780970|r  414 RRWVYEQYDTMI-QSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITD  492 (737)
Q Consensus       414 K~~i~~qyD~~V-~g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~  492 (737)
                      |.| .++|..+. +-.+++.|+.||+|++++.  ...+++.+....+-+.++||.||+..|...+||+.+|||+|+++.+
T Consensus        63 k~~-lk~~~~t~~~~~vi~g~gdnAgvvdi~d--~~~v~fKvESHNHPSaIePy~GAATGvGGiIRDv~smGArPiA~l~  139 (743)
T COG0046          63 KSL-LKMFPTTHTGEYVLSGPGDNAGVVDIGD--GWAVVFKVESHNHPSAIEPYQGAATGVGGIIRDVLSMGARPIALLD  139 (743)
T ss_pred             HHH-HHHCCCCCCCCEEEECCCCCCCEEEECC--CEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEC
T ss_conf             999-9619987888717875267763588679--6799998546789886688797304657656224346760001010


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf             10245666862134699999999852210288665443200112368666763111222233352023310214389807
Q gi|254780970|r  493 NLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLI  572 (737)
Q Consensus       493 ~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I  572 (737)
                      .|-|+.|+.++..+-+.+.+.|++++-+.+|+|.++|-.-|+..+.+.++   ....++|.++. .++.+...+.+|+.|
T Consensus       140 ~l~fG~~~~~~~~~i~~gvv~Gia~YGN~iGvPtv~Ge~~fd~~y~~npL---vna~~vG~i~~-~~i~~~~a~~~G~~l  215 (743)
T COG0046         140 SLRFGIPDIEKTRYIMKGVVAGIAAYGNEIGVPTVGGEFRFDESYVGNPL---VNAGCVGLIRK-EHIVKGEAIGPGDKL  215 (743)
T ss_pred             CCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCE---EEEEEEECCCH-HHEEECCCCCCCCEE
T ss_conf             21247999730567874006403323763465544248997444378960---78788620114-441104678999879


Q ss_pred             EECCCC--CCCCCHHHHHHHHHC-----CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             513776--655432678888611-----6789996479899999999999999959806994648657999999998458
Q gi|254780970|r  573 LMIGND--GCHLDCSMYSLECAS-----SNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISS  645 (737)
Q Consensus       573 ~liG~~--~~~LggS~~~~~~~~-----~~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as  645 (737)
                      +++|..  .+.+||..++-.-..     .....+..-|+..+|.++++++++++.++|.++||+..|||..++.||+..+
T Consensus       216 i~~Gg~TgrDGigGat~aS~~~~~~~~e~dr~aVQvGdPf~Ek~l~ea~le~~~~~~I~~i~DlGAgGLs~A~~Ela~~g  295 (743)
T COG0046         216 ILLGGKTGRDGIGGATFASMELGEESEEEDRPSVQVGDPFMEKRLQEAILECVQTGLIKGIQDLGAGGLSCAISELAAKG  295 (743)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf             99747756566573323104427451553477501278588899999999987319768874168731322389997336


Q ss_pred             CCCEEEEECCC----CCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCE-EEE--EC--CEECC
Q ss_conf             97089980566----68987888729883218999968809989999985798499989987986-898--07--41214
Q gi|254780970|r  646 AKGMDIILPIE----IEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGST-LSI--HN--ILNIP  716 (737)
Q Consensus       646 ~~G~~I~L~~~----~~~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~~-l~i--~~--~~~~~  716 (737)
                      +.|++++|+..    .+..|++.|.||||.|+++.|.|+++++|.++|++.++++.+||+||.+. +.+  ++  +++++
T Consensus       296 g~G~~i~Ld~VP~rE~gMsp~Ei~~SESQERMllvv~p~~~e~~~~i~~k~~l~~aVVG~vT~~~~~~~~~~ge~v~dlP  375 (743)
T COG0046         296 GLGAEIDLDKVPLREPGMSPYEIWLSESQERMLLVVAPEDVEEFLEICEKERLPAAVVGEVTDEPRLVVDWKGEPVVDLP  375 (743)
T ss_pred             CCEEEEEHHCCCCCCCCCCHHHHHHHCCCHHEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCEEEECC
T ss_conf             97069980008346799988998873110105899851349999999997189807999994376599997896788665


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780970|r  717 VATLQT  722 (737)
Q Consensus       717 i~~l~~  722 (737)
                      ++-|.+
T Consensus       376 ~~~L~~  381 (743)
T COG0046         376 IDVLAG  381 (743)
T ss_pred             HHHHCC
T ss_conf             799768


No 23 
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=100.00  E-value=8.5e-39  Score=284.94  Aligned_cols=215  Identities=29%  Similarity=0.474  Sum_probs=131.1

Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99995178877765888872105581022576778743687750457875686388899888745886654308721132
Q gi|254780970|r   86 VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGG  165 (737)
Q Consensus        86 ~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G  165 (737)
                      +++|+|+||||+.++||.++.+++.+.+||+.+|||+|++++++|.|++...+   ..+.++++|++++++++|+|++||
T Consensus         2 l~~~tDg~~~~~~~dP~~~G~~av~~~~sDi~a~Ga~P~~~l~~l~~~~~~~~---~~l~~i~~Gi~~~~~~~gv~ivGG   78 (222)
T cd00396           2 LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEV---DILEDVVDGVAEACNQLGVPIVGG   78 (222)
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             59996688994001888899999999988898759985999998883489987---899999999999999969826813


Q ss_pred             EEEEECCCCC-CCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             0355215676-642211221121135543112256897799965765644410466667772865333444332679899
Q gi|254780970|r  166 EVEFLPCYNN-NIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFT  244 (737)
Q Consensus       166 ~~~~~~~y~~-~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~  244 (737)
                      +|.+.+.+.. ++.+.++++|+++.+++.+....++||.|++.|                                    
T Consensus        79 ~t~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~a~~GD~ii~~g------------------------------------  122 (222)
T cd00396          79 HTSVSPGTMGHKLSLAVFAIGVVEKDRVIDSSGARPGDVLILTG------------------------------------  122 (222)
T ss_pred             EEEECCCCCCCCEEEEEEEEEEECCCCEECCCCCCCCCEEEEEC------------------------------------
T ss_conf             58975888754617999999875565400656799999999989------------------------------------


Q ss_pred             HHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCC-----CCCHHHHHHCCCCCEEEEEE
Q ss_conf             9888999874011383011034775201112233201477528996202204667-----89998986178885089999
Q gi|254780970|r  245 GKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE-----GMTAYEMMLSESQERMLMIL  319 (737)
Q Consensus       245 ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~-----~l~~~ei~~sEsQeR~~~~v  319 (737)
                          .+.++++.+.+.|++|||+++|||+.++.||+.++++|++|+++++|+.+.     ...+++.+.+++|.||+++|
T Consensus       123 ----~~~~~~l~~~~~v~a~~DiT~GGL~~~l~e~a~~s~~g~~i~~~~ip~~~~~~~~~~~~~~~~~~~~~~g~lli~v  198 (222)
T cd00396         123 ----VDAVLELVAAGDVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIEEALLFNSSGGLLIAV  198 (222)
T ss_pred             ----HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEHHHCCCCHHHHHHHHHCHHHHHHHCCCCEEEEEE
T ss_conf             ----4999987645885699867987499999999987697699977657988789988550359997522548699999


Q ss_pred             ECCCHHHHHHHHHHHCCEEECCCC
Q ss_conf             546758899988870971311221
Q gi|254780970|r  320 NPEKQHKAQEILNKWGLHFSIIGI  343 (737)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~~~~iG~  343 (737)
                      +|++.++++++++++++++++||+
T Consensus       199 ~~e~~~~v~~~l~~~gi~a~vIGr  222 (222)
T cd00396         199 PAEEADAVLLLLNGNGIDAAVIGR  222 (222)
T ss_pred             CHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             789999999999966999797192


No 24 
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=100.00  E-value=6.4e-37  Score=272.07  Aligned_cols=277  Identities=21%  Similarity=0.295  Sum_probs=198.0

Q ss_pred             CCCEEECCCCCEEEEEECCCEEEEEEEC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf             9748993347736898369839999951-----78877765888872105581022576778743687750457875686
Q gi|254780970|r   64 GKHVIQGPGENAGVVDIGGGDCVVFKME-----SHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHP  138 (737)
Q Consensus        64 ~~~vi~~~~~~a~vi~~~~~~~~~~k~E-----tHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p  138 (737)
                      .++++.++||||+|+++.++..++++..     +|.+|...+||..+-..+...++||.+|||+|++++.+|.++  ...
T Consensus        18 ~~~~~~giGDDaAvi~~~~~~~lv~ttD~~ve~~HF~~~~~~p~~iG~~av~~n~SDiaamGa~P~~~~~sl~lP--~~~   95 (320)
T PRK05731         18 RADVELGIGDDAALLDPPPGQRLVVSTDTLVEGVHFRPDWSSPEDLGYKALAVNLSDLAAMGARPAAFLLALALP--KDV   95 (320)
T ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC--CCC
T ss_conf             988646898777999708998799995565657677878899999999999987888997189722788850268--864


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHH
Q ss_conf             38889988874588665430872113203552156766422112211211355431122568977999657656444104
Q gi|254780970|r  139 KTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGG  218 (737)
Q Consensus       139 ~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~G  218 (737)
                      ...| +.++.+|++++++++|+|+|||+|...    ..+.+.+.++|.++.+++++....+|||.|++.    |..|..+
T Consensus        96 ~~~~-l~~i~~Gi~~~~~~~gv~lvGGdt~~~----~~~~i~vt~iG~~~~~~~l~r~ga~~GD~I~vT----G~lG~s~  166 (320)
T PRK05731         96 DEAW-LEALADGLFALADRYGAELIGGDTTRG----PDLSISVTAIGEVPGGRALRRSGAKPGDLVAVT----GTLGDSA  166 (320)
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCEEEECCCCCC----CCCEEEEEEEEECCCCCEEECCCCCCCCEEEEC----CCCCHHH
T ss_conf             3999-999999999999983956960431258----871799999961179965623678989878972----7742778


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCHHHHHHH-----HHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHH
Q ss_conf             666677728653334443326798999888-----999874011383011034775201112233201477528996202
Q gi|254780970|r  219 ASMASEEFGENIAKKRPTVQVGDPFTGKCL-----LEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDK  293 (737)
Q Consensus       219 a~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~-----~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~  293 (737)
                      +.++....+.....    .+.-++..++.+     .+....+  .+.+++|||+++ ||..++.||+.+|++|++|++++
T Consensus       167 ~gl~~l~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~l--~~~~~a~~DiSd-GL~~~L~eia~~Sgvg~~I~~~~  239 (320)
T PRK05731        167 AGLALLLNGGQASA----NEDAAALISRHLRPQPRVGLGQAL--RGLASAAMDISD-GLAADLGHIAEASGVGADIDADA  239 (320)
T ss_pred             HHHHHHHCCCCCCC----CHHHHHHHHHHHCCCCCHHHHHHH--HHHHHHHCCCCH-HHHHHHHHHHHHCCCCEEEEHHH
T ss_conf             89999847877784----055799999962898438999997--765555320416-79999999999869939985887


Q ss_pred             HCCCCC----CCCHHHHHHC--CCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCCC
Q ss_conf             204667----8999898617--88850899995467588999888709713112212104431000258644
Q gi|254780970|r  294 VPTCEE----GMTAYEMMLS--ESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEV  359 (737)
Q Consensus       294 vp~~~~----~l~~~ei~~s--EsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~v  359 (737)
                      +|+++.    +.+|+++.++  |.+| |+++|+|++.++++++++++++++++||+||+++.+.+..+++.+
T Consensus       240 iP~~~~~~~~~~~~~~~~l~gGedye-Ll~tv~~~~~~~~~~~~~~~gi~~~~IG~v~~~~gv~l~~~g~~~  310 (320)
T PRK05731        240 LPVSAALAALGEDALRWALSGGEDYE-LLFTVPPENRGALLAAAKKLGVGVTIIGRVAGGEGVLLDRDGKPV  310 (320)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCEE-EEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCEE
T ss_conf             89875665535549998316787336-999988999999999999759896999999848847999399886


No 25 
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=100.00  E-value=1.5e-35  Score=262.72  Aligned_cols=213  Identities=28%  Similarity=0.433  Sum_probs=182.6

Q ss_pred             EEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             27973045321000010011356789777641027851022322102456668621346999999998522102886654
Q gi|254780970|r  449 ALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVS  528 (737)
Q Consensus       449 gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivg  528 (737)
                      ++++|+|...+++.+|||.+++.||+++++|++||||+|++++++++|+++.+++.+   .+.++|+.++|+++|+|++|
T Consensus         1 ~l~~~tDg~~~~~~~dP~~~G~~av~~~~sDi~a~Ga~P~~~l~~l~~~~~~~~~~l---~~i~~Gi~~~~~~~gv~ivG   77 (222)
T cd00396           1 SLAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEVDIL---EDVVDGVAEACNQLGVPIVG   77 (222)
T ss_pred             CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCHHHH---HHHHHHHHHHHHHHCCCEEE
T ss_conf             959996688994001888899999999988898759985999998883489987899---99999999999996982681


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             43200112368666763111222233352023310214389807513776655432678888611678999647989999
Q gi|254780970|r  529 GNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEK  608 (737)
Q Consensus       529 GkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k  608 (737)
                      |+.+.+.....  .++++.++++|.++. .+.++...+++||.|+++|                                
T Consensus        78 G~t~~~~~~~~--~~~~~~~~~~G~~~~-~~~~~~~~a~~GD~ii~~g--------------------------------  122 (222)
T cd00396          78 GHTSVSPGTMG--HKLSLAVFAIGVVEK-DRVIDSSGARPGDVLILTG--------------------------------  122 (222)
T ss_pred             EEEEECCCCCC--CCEEEEEEEEEEECC-CCEECCCCCCCCCEEEEEC--------------------------------
T ss_conf             35897588875--461799999987556-5400656799999999989--------------------------------


Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC---------CHHHHHHCCCCCCEEEEECH
Q ss_conf             999999999995980699464865799999999845897089980566689---------87888729883218999968
Q gi|254780970|r  609 NHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEK---------DPKPFLFGEDQGRYVVCISP  679 (737)
Q Consensus       609 ~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~~---------d~~~~LFsEs~Gr~ii~V~~  679 (737)
                        ...+.++++.+.|+|+||+|+|||+.+|.||+.+|++|++|+++..+-.         .....++.++.|+++++|++
T Consensus       123 --~~~~~~l~~~~~v~a~~DiT~GGL~~~l~e~a~~s~~g~~i~~~~ip~~~~~~~~~~~~~~~~~~~~~~g~lli~v~~  200 (222)
T cd00396         123 --VDAVLELVAAGDVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIEEALLFNSSGGLLIAVPA  200 (222)
T ss_pred             --HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEHHHCCCCHHHHHHHHHCHHHHHHHCCCCEEEEEECH
T ss_conf             --499998764588569986798749999999998769769997765798878998855035999752254869999978


Q ss_pred             HHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             8099899999857984999899
Q gi|254780970|r  680 ENQDLVMSEANNKNIPLRYLGK  701 (737)
Q Consensus       680 ~~~~~~~~~~~~~gi~~~~IG~  701 (737)
                      ++.+++++.++++|+++++||+
T Consensus       201 e~~~~v~~~l~~~gi~a~vIGr  222 (222)
T cd00396         201 EEADAVLLLLNGNGIDAAVIGR  222 (222)
T ss_pred             HHHHHHHHHHHHCCCCEEECCC
T ss_conf             9999999999966999797192


No 26 
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis.  HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00  E-value=4.5e-35  Score=259.42  Aligned_cols=271  Identities=24%  Similarity=0.359  Sum_probs=200.1

Q ss_pred             CHHHHHH-HHHCCCCEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCC--CCCCCCC---CCCCCCCCCCCCCEEEEE
Q ss_conf             8899975-120697489933477368983698399999517887776588--8872105---581022576778743687
Q gi|254780970|r   53 SKKWLRT-LPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEP--YQGAATG---VGGILRDIFTMGARPVAA  126 (737)
Q Consensus        53 ~~~~l~~-~~~~~~~vi~~~~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P--~~GAaTg---~gG~iRDi~~~Ga~p~a~  126 (737)
                      ++.+++. |...-+..+.+.||||+++++++++ ++++..+.    -++|  |++..-|   +.+.++||.+|||+|+++
T Consensus         6 ~~~~i~~~~~~~~~~~~lgigdDaAvi~~~~~~-lvvttD~~----v~~p~~f~~~diG~~Av~~~~sDIaamGa~P~~~   80 (293)
T cd02197           6 MQELIEELFLKAFDNPILEVLEDAAALLVGGGR-LAFTTDSF----VVSPLFFPGGDIGKLAVCGTVNDLAMMGAKPLYL   80 (293)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCE-EEEEECCC----CCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCHHH
T ss_conf             999999998863698667888876986169984-99993654----2277528984473787521287898659975676


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEE
Q ss_conf             7504578756863888998887458866543087211320355215-676642211221121135543112256897799
Q gi|254780970|r  127 MNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPC-YNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLV  205 (737)
Q Consensus       127 ~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~-y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii  205 (737)
                      +.+|.++. ..  +...+.++.+|+.++++++|+|+|||+|.+.+. ....+.+++.++|.++.+.+++....+|||.|+
T Consensus        81 l~sl~lp~-~~--~~~~l~~i~~Gi~~~~~~~gv~iVGGdT~v~~~~~~~~l~is~t~iG~v~~~~~~~~~gA~pGD~ii  157 (293)
T cd02197          81 SLGFILEE-GF--PLEDLERIVKSMAEAAREAGVKIVTGDTKVVPKGKADGIFINTTGIGVIPRGVIISPSNIRPGDKII  157 (293)
T ss_pred             EEEEECCC-CC--CHHHHHHHHHHHHHHHHHHCCEEEECCEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf             37565589-99--9999999999999999971976861662751478778559986788985688550357899999999


Q ss_pred             EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             96576564441046666777286533344433267989998889998740113830110347752011122332014775
Q gi|254780970|r  206 YLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNL  285 (737)
Q Consensus       206 ~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~  285 (737)
                      +.|    ..|.+|++..+.......+.+.    ..|....+++.+..++.  ...+++|||++.|||+.++.|||.+||+
T Consensus       158 vTg----~lG~~g~~il~~r~~~~~~~~~----~~d~~~~~~~~~~~l~~--~~~v~Am~DiT~gGL~~~L~eia~aSgv  227 (293)
T cd02197         158 VSG----TIGDHGAAILAAREGLGFETDI----ESDCAPLNGLVEALLEA--GPGIHAMRDPTRGGLAAVLNEIARASGV  227 (293)
T ss_pred             EEC----CHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHHHHHHC--CCCCEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             968----6078899999852466644014----66666668999999970--7874474167975599999999998599


Q ss_pred             CEEEEEHHHCCCCC--------CCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH--CCEEECCCCE
Q ss_conf             28996202204667--------89998986178885089999546758899988870--9713112212
Q gi|254780970|r  286 GITLDLDKVPTCEE--------GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKW--GLHFSIIGIT  344 (737)
Q Consensus       286 G~~i~l~~vp~~~~--------~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~--~~~~~~iG~v  344 (737)
                      |++|+.+++|++++        +++||++.   |+.+|+++|+|++.+++++.++++  ++++++||||
T Consensus       228 g~~I~~~~iPv~~~v~~~~e~lg~DPl~~a---s~G~ll~~v~~e~a~~vl~~l~~~~~G~~A~iIGeV  293 (293)
T cd02197         228 GIEIEEEAIPVREEVRGACEMLGLDPLYLA---NEGKFVAIVPPEDAEEVLEALRSHPLGKEAAIIGEV  293 (293)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCHHHHH---CCCEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             399940368888899999998593987883---485399998789999999999728889981898669


No 27 
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=100.00  E-value=3.1e-35  Score=260.50  Aligned_cols=261  Identities=26%  Similarity=0.365  Sum_probs=193.3

Q ss_pred             CCCCEEECCCCCEEEEEECCCEEEEEE---ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf             697489933477368983698399999---51788777658888721055810225767787436877504578756863
Q gi|254780970|r   63 TGKHVIQGPGENAGVVDIGGGDCVVFK---MESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPK  139 (737)
Q Consensus        63 ~~~~vi~~~~~~a~vi~~~~~~~~~~k---~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~  139 (737)
                      ..++++.++||||++++.++++.++-+   +|+++||...+||..+...+.+.++||.+|||+|++++.+|.++.  ...
T Consensus        15 ~~~~~~~g~GDDaavi~~~~~~lv~ttD~~~e~~hf~~~~~p~~iG~~av~~nlSDIaamGa~P~~~~~sl~lp~--~~~   92 (291)
T cd02194          15 AGPGVLLGIGDDAAVLKPPGGRLVVTTDTLVEGVHFPPDTTPEDIGWKALAVNLSDLAAMGARPLGFLLSLGLPP--DTD   92 (291)
T ss_pred             CCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC--CCC
T ss_conf             999853589888799960997699996665466668999998999999999888889873896123577650689--998


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHH
Q ss_conf             88899888745886654308721132035521567664221122112113554311225689779996576564441046
Q gi|254780970|r  140 TKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGA  219 (737)
Q Consensus       140 ~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga  219 (737)
                      ..| +.++++|++++++++|+|+|||+|...    ..+.+.+.++|.++.+.+++....+|||.|++.|    ..|.+++
T Consensus        93 ~~~-l~~i~~Gi~~~~~~~gv~ivGGdt~~~----~~~~i~vt~iG~~~~~~~i~r~~ak~GD~i~vtg----~~G~~~~  163 (291)
T cd02194          93 EEW-LEEFYRGLAEAADRYGVPLVGGDTTSG----SELVISVTALGEVEKGKPLRRSGAKPGDLLYVTG----TLGDAAA  163 (291)
T ss_pred             HHH-HHHHHHHHHHHHHHHCCCEEECCCCCC----CCEEEEEEEEEEECCCCEEECCCCCCCCEEEEEC----CCCHHHH
T ss_conf             999-999999999999986980661341235----6548999999997688434115799899799946----7427799


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHH
Q ss_conf             6667772865333444332679899988-----89998740113830110347752011122332014775289962022
Q gi|254780970|r  220 SMASEEFGENIAKKRPTVQVGDPFTGKC-----LLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKV  294 (737)
Q Consensus       220 ~~sS~~~~~~~~~~~~~VQ~gdp~~ek~-----~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~v  294 (737)
                      .+...........+.     -..+.++.     .++....+ .++.+++|||+++ ||..++.||+.+||+|++|+++++
T Consensus       164 gl~~~~~~~~~~~~~-----~~~~~~~~~~p~~~i~~~~~l-~~~~v~a~~DiSd-GL~~~l~eia~~S~vg~~I~~~~i  236 (291)
T cd02194         164 GLALLLGGLKLPEEL-----YEELIERHLRPEPRLELGRAL-AEGLATAMIDISD-GLLADLGHIAEASGVGAVIDLDKL  236 (291)
T ss_pred             HHHHHHCCCCCCCHH-----HHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHCCCH-HHHHHHHHHHHHCCCEEEEEHHHC
T ss_conf             999996688777225-----799999864888529999999-8500044521005-799999999998498099858868


Q ss_pred             CCCC------CCCCHHHHHHC--CCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEE
Q ss_conf             0466------78999898617--888508999954675889998887097131122121
Q gi|254780970|r  295 PTCE------EGMTAYEMMLS--ESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITT  345 (737)
Q Consensus       295 p~~~------~~l~~~ei~~s--EsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt  345 (737)
                      |+..      .+++|+|+.++  |.+| ++++|+|++.   .+++++.++++++||+||
T Consensus       237 p~~~~~~~~~~~~~~~~~~l~gGedy~-ll~tv~~~~~---~~~~~~~~~~~~~IG~vt  291 (291)
T cd02194         237 PLSPALRAAELGEDALELALSGGEDYE-LLFTVPPENA---EAAAAKLGVPVTVIGRVT  291 (291)
T ss_pred             CCCHHHHHHHCCCCHHHHHHHCCCCEE-EEEEECHHHH---HHHHHHCCCCEEEEEEEC
T ss_conf             999899987629999999970997407-9999778999---999987398958998869


No 28 
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00  E-value=3.2e-34  Score=253.55  Aligned_cols=256  Identities=23%  Similarity=0.296  Sum_probs=187.1

Q ss_pred             CCCCCC--CCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHH
Q ss_conf             100001--357631420377762279730453210000100113567897776410278510223221024566686213
Q gi|254780970|r  428 NSIQLP--GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIM  505 (737)
Q Consensus       428 ~tv~~P--g~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~  505 (737)
                      +.++.|  |+||||++++.   +-+++|+|  |.  ..+||..++.||+.+++||+||||+|++++++++|+...+.+  
T Consensus        24 ~v~vg~~~gdDaavi~~~~---~~lvvttD--p~--~~~~~~~G~~ava~~~sDI~amGa~P~~~l~~l~~p~~~~~~--   94 (298)
T cd06061          24 EVLVGPGGGEDAAVVDFGG---KVLVVSTD--PI--TGAGKDAGWLAVHIAANDIATSGARPRWLLVTLLLPPGTDEE--   94 (298)
T ss_pred             CEEECCCCCCEEEEEEECC---CEEEEECC--CC--CCCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHEECCCCCCHH--
T ss_conf             8877899985259998689---87999848--83--058136999999987999998599828876121188999999--


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHH
Q ss_conf             46999999998522102886654432001123686667631112222333520233102143898075137766554326
Q gi|254780970|r  506 GQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCS  585 (737)
Q Consensus       506 ~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS  585 (737)
                       .+.+.++|+.++|+++|++++||+.+++....    .|.+.++++|.++. .+.++...+++||.|+++|..+.+ +.+
T Consensus        95 -~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~~----~~~i~~t~~G~~~~-~~~~~~~~ak~GD~Iiltg~~G~~-~~~  167 (298)
T cd06061          95 -ELKAIMREINEAAKELGVSIVGGHTEVTPGVT----RPIISVTAIGKGEK-DKLVTPSGAKPGDDIVMTKGAGIE-GTA  167 (298)
T ss_pred             -HHHHHHHHHHHHHHHHCCCEECCEEEECCCCC----CCEEEEEEEEEECC-CCEECCCCCCCCCEEEEECCCCHH-HHH
T ss_conf             -99999999999999839956443158647877----76799999999568-866306779999999998984076-899


Q ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHH---HH--HHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC--
Q ss_conf             7888861167899964798999999999---99--9999598069946486579999999984589708998056668--
Q gi|254780970|r  586 MYSLECASSNIGPPPKVDCHLEKNHGFF---VL--SMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIE--  658 (737)
Q Consensus       586 ~~~~~~~~~~~g~~p~~d~~~~k~~~~~---v~--~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~--  658 (737)
                      +++..+................+..+..   +.  .+..+..++|+||+|+|||+.+|.|||.+|++|++|+++..+-  
T Consensus       168 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~Dis~gGL~~~L~e~~~~s~vg~~I~~~~iPi~~  247 (298)
T cd06061         168 ILANDFEEELKKRLSEEELREAAKLFYKISVVKEALIAAEAGVTAMHDATEGGILGALWEVAEASGVGLRIEKDKIPIRQ  247 (298)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf             99987066552346758899878754022239999975105755987167552777899999746974999775468887


Q ss_pred             ----------CCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             ----------98788872988321899996880998999998579849998998
Q gi|254780970|r  659 ----------KDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV  702 (737)
Q Consensus       659 ----------~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~V  702 (737)
                                .||+. +|  +.|+++++|++++.+++++.++++|+++++||+|
T Consensus       248 ~~~~~~~~~~~dp~~-~~--~~G~ll~~v~~~~~~~v~~~l~~~g~~a~vIGeV  298 (298)
T cd06061         248 ETKEICEALGIDPLR-LI--SSGTLLITVPPEKGDELVDALEEAGIPASVIGKI  298 (298)
T ss_pred             HHHHHHHHCCCCHHH-HH--HCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             999999974978888-97--0887999998899999999999649796999869


No 29 
>cd02195 SelD Selenophosphate synthetase  (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=100.00  E-value=3.3e-33  Score=246.60  Aligned_cols=246  Identities=21%  Similarity=0.250  Sum_probs=186.4

Q ss_pred             CCCC--CCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHH
Q ss_conf             0001--35763142037776227973045321000010011356789777641027851022322102456668621346
Q gi|254780970|r  430 IQLP--GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQ  507 (737)
Q Consensus       430 v~~P--g~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~q  507 (737)
                      ++.|  |.||||+++.  .++.++.|+|..+... .|||..++.|+..+++||++||++|++++.++.+|...+......
T Consensus        35 lvg~~~gdDaAvi~~~--~~~~lv~t~D~f~~~v-~dp~~~G~~Av~~alsDiaamGa~P~~~l~~l~lP~~~~~~~~~~  111 (287)
T cd02195          35 LVGLGTGDDAAVYRLP--GGLALVQTTDFFPPIV-DDPYLFGRIAAANALSDIYAMGAKPLSALAIVTLPRKLPALQEEV  111 (287)
T ss_pred             CCCCCCCCCEEEEEEC--CCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCHHHH
T ss_conf             2389987754899718--9818999757877766-598999999999866469884587699998802777775112999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHH-
Q ss_conf             9999999985221028866544320011236866676311122223335202331021438980751377665543267-
Q gi|254780970|r  508 FVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSM-  586 (737)
Q Consensus       508 l~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS~-  586 (737)
                      |.+.++|+.++|+++|++++||+.+      ..+ -++..++++|.++. ++.++...+++||.|++++.    +|.+. 
T Consensus       112 l~~i~~Gi~~~~~~~gv~ivGGhT~------~~~-~~~i~~tv~G~~~~-~~~i~~~~ak~GD~IivTk~----lG~g~~  179 (287)
T cd02195         112 LREILAGGKDKLREAGAVLVGGHTI------EGP-EPKYGLSVTGLVHP-NKILRNSGAKPGDVLILTKP----LGTGIL  179 (287)
T ss_pred             HHHHHHHHHHHHHHCCCCEECCCEE------CCC-CCEEEEEEEEEECC-CCCEECCCCCCCCEEEEECC----CCHHHH
T ss_conf             9999999999999829957755332------088-86688889988757-76254268999999999578----758999


Q ss_pred             HHHHHHCCCCCCCCCCCHHHHH----HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
Q ss_conf             8888611678999647989999----999999999995980699464865799999999845897089980566689878
Q gi|254780970|r  587 YSLECASSNIGPPPKVDCHLEK----NHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPK  662 (737)
Q Consensus       587 ~~~~~~~~~~g~~p~~d~~~~k----~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~~d~~  662 (737)
                      ++.......    +..+.+...    .......++..+..++||||+|+|||+.+|.|||.+|++|++|+++..+-    
T Consensus       180 ~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~v~Am~DiT~gGL~g~L~ema~aSgvg~~i~~~~IPv----  251 (287)
T cd02195         180 FAAEMAGLA----RGEDIDAALESMARLNRAAAELLRKYGAHACTDVTGFGLLGHLLEMARASGVSAEIDLDKLPL----  251 (287)
T ss_pred             HHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCE----
T ss_conf             999872667----868899999998531399999986558733323655478999999999779909997044877----


Q ss_pred             HHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             8872988321899996880998999998579849998998
Q gi|254780970|r  663 PFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV  702 (737)
Q Consensus       663 ~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~V  702 (737)
                          -|+.|.++++|++++.+++++.+++.|+++++||+|
T Consensus       252 ----~qtsG~ll~~v~~~~a~~~~~~l~~~g~~a~iIG~V  287 (287)
T cd02195         252 ----LQTSGGLLAAVPPEDAAALLALLKAGGPPAAIIGEV  287 (287)
T ss_pred             ----EEECCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             ----971582599986899999999999669984999779


No 30 
>cd02195 SelD Selenophosphate synthetase  (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=100.00  E-value=1.5e-34  Score=255.89  Aligned_cols=275  Identities=23%  Similarity=0.279  Sum_probs=207.8

Q ss_pred             HCCCCCCCCCHHHHHHH-----HHCCCCEEECC--CCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00110744588999751-----20697489933--477368983698399999517887776588887210558102257
Q gi|254780970|r   44 WNEHCSYKSSKKWLRTL-----PTTGKHVIQGP--GENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDI  116 (737)
Q Consensus        44 wSEHC~~k~~~~~l~~~-----~~~~~~vi~~~--~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi  116 (737)
                      --.=|.-|-....|+.+     ....+.++.+|  ||||+|+++.++..++++++ |.+|..-+||.-.---+-..++||
T Consensus         6 ~c~gc~~Kv~~~~L~~~l~~~~~~~~~~vlvg~~~gdDaAvi~~~~~~~lv~t~D-~f~~~v~dp~~~G~~Av~~alsDi   84 (287)
T cd02195           6 KCAGCGAKVGPGVLSQLLAGLPLPTDPNLLVGLGTGDDAAVYRLPGGLALVQTTD-FFPPIVDDPYLFGRIAAANALSDI   84 (287)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECC-CCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             6872677489899999997377878955023899877548997189818999757-877766598999999999866469


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCC
Q ss_conf             67787436877504578756863888998887458866543087211320355215676642211221121135543112
Q gi|254780970|r  117 FTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSK  196 (737)
Q Consensus       117 ~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~  196 (737)
                      .+|||+|++.+..+.++........+.+.++.+|+.++++++|+|+|||+|...+    .+.++..+.|.++.+++++..
T Consensus        85 aamGa~P~~~l~~l~lP~~~~~~~~~~l~~i~~Gi~~~~~~~gv~ivGGhT~~~~----~~~i~~tv~G~~~~~~~i~~~  160 (287)
T cd02195          85 YAMGAKPLSALAIVTLPRKLPALQEEVLREILAGGKDKLREAGAVLVGGHTIEGP----EPKYGLSVTGLVHPNKILRNS  160 (287)
T ss_pred             HHHCCCHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCEECCC----CCEEEEEEEEEECCCCCEECC
T ss_conf             8845876999988027777751129999999999999999829957755332088----866888899887577625426


Q ss_pred             CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHH
Q ss_conf             25689779996576564441046666777286533344433267989998889998740113830110347752011122
Q gi|254780970|r  197 ARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSA  276 (737)
Q Consensus       197 ~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~  276 (737)
                      ..+|||.|++.|    ..|.+. .++...............   -..+ .++.+...++..+..+++|||++.|||+.++
T Consensus       161 ~ak~GD~IivTk----~lG~g~-~~~a~~~~~~~~~~~~~~---~~~~-~~~~~~~~~l~~~~~v~Am~DiT~gGL~g~L  231 (287)
T cd02195         161 GAKPGDVLILTK----PLGTGI-LFAAEMAGLARGEDIDAA---LESM-ARLNRAAAELLRKYGAHACTDVTGFGLLGHL  231 (287)
T ss_pred             CCCCCCEEEEEC----CCCHHH-HHHHHHCCCCCHHHHHHH---HHHH-HHHHHHHHHHHHHCCCCEEECCCCCHHHHHH
T ss_conf             899999999957----875899-999987266786889999---9998-5313999999865587333236554789999


Q ss_pred             HHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCE
Q ss_conf             33201477528996202204667899989861788850899995467588999888709713112212
Q gi|254780970|r  277 IEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT  344 (737)
Q Consensus       277 ~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~v  344 (737)
                      .||+..|++|++|++++||+.            |++..|+++|+|++.+++.+.++++++++++||+|
T Consensus       232 ~ema~aSgvg~~i~~~~IPv~------------qtsG~ll~~v~~~~a~~~~~~l~~~g~~a~iIG~V  287 (287)
T cd02195         232 LEMARASGVSAEIDLDKLPLL------------QTSGGLLAAVPPEDAAALLALLKAGGPPAAIIGEV  287 (287)
T ss_pred             HHHHHHCCCEEEEEECCCCEE------------EECCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             999997799099970448779------------71582599986899999999999669984999779


No 31 
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=100.00  E-value=1.2e-32  Score=242.83  Aligned_cols=264  Identities=19%  Similarity=0.249  Sum_probs=187.9

Q ss_pred             CCCCCCCCCCCCCCEEEECCCCCCEEEEECCC---CCCC--HHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
Q ss_conf             00110000135763142037776227973045---3210--000100113567897776410278510223221024566
Q gi|254780970|r  425 IQSNSIQLPGGDAGVIRVEGHETKALAFSSDV---TPRY--VKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNP  499 (737)
Q Consensus       425 V~g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~---~p~~--~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P  499 (737)
                      .+....+.||+||||+++.  .++.+++|+|.   +.++  ...+||..|+.||+.+++||+||||+|+++++++.+  |
T Consensus        17 ~~~~~~~giGDDaAvi~~~--~~~~lv~ttD~~ve~~HF~~~~~~p~~iG~~av~~n~SDiaamGa~P~~~~~sl~l--P   92 (320)
T PRK05731         17 QRADVELGIGDDAALLDPP--PGQRLVVSTDTLVEGVHFRPDWSSPEDLGYKALAVNLSDLAAMGARPAAFLLALAL--P   92 (320)
T ss_pred             CCCCCCCCCCCCEEEEEEC--CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--C
T ss_conf             7988646898777999708--99879999556565767787889999999999998788899718972278885026--8


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCC
Q ss_conf             68621346999999998522102886654432001123686667631112222333520233102143898075137766
Q gi|254780970|r  500 EKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDG  579 (737)
Q Consensus       500 ~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~  579 (737)
                      .+.+.. .+.+.++|+.++|+++|++++||+.+      ..+ ...+.++++|.++. .+.++...+++||.|+++|..+
T Consensus        93 ~~~~~~-~l~~i~~Gi~~~~~~~gv~lvGGdt~------~~~-~~~i~vt~iG~~~~-~~~l~r~ga~~GD~I~vTG~lG  163 (320)
T PRK05731         93 KDVDEA-WLEALADGLFALADRYGAELIGGDTT------RGP-DLSISVTAIGEVPG-GRALRRSGAKPGDLVAVTGTLG  163 (320)
T ss_pred             CCCHHH-HHHHHHHHHHHHHHHHCCEEEECCCC------CCC-CCEEEEEEEEECCC-CCEEECCCCCCCCEEEECCCCC
T ss_conf             864399-99999999999999839569604312------588-71799999961179-9656236789898789727742


Q ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH-------HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             55432678888611678999647989999999-------99999999598069946486579999999984589708998
Q gi|254780970|r  580 CHLDCSMYSLECASSNIGPPPKVDCHLEKNHG-------FFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDII  652 (737)
Q Consensus       580 ~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~-------~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~  652 (737)
                      ....|  +..............  .......+       .....+  .+.++||||+|| ||+.+|.|||.+|++|++|+
T Consensus       164 ~s~~g--l~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~l--~~~~~a~~DiSd-GL~~~L~eia~~Sgvg~~I~  236 (320)
T PRK05731        164 DSAAG--LALLLNGGQASANED--AAALISRHLRPQPRVGLGQAL--RGLASAAMDISD-GLAADLGHIAEASGVGADID  236 (320)
T ss_pred             HHHHH--HHHHHCCCCCCCCHH--HHHHHHHHHCCCCCHHHHHHH--HHHHHHHCCCCH-HHHHHHHHHHHHCCCCEEEE
T ss_conf             77889--999847877784055--799999962898438999997--765555320416-79999999999869939985


Q ss_pred             ECCCC--------CCCHHHHHH--CCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC-EEEE
Q ss_conf             05666--------898788872--988321899996880998999998579849998998798-6898
Q gi|254780970|r  653 LPIEI--------EKDPKPFLF--GEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS-TLSI  709 (737)
Q Consensus       653 L~~~~--------~~d~~~~LF--sEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~-~l~i  709 (737)
                      ++..+        ..+++++.+  +|++. ++++|++++.+++++.+++.++++++||+|++. .+.+
T Consensus       237 ~~~iP~~~~~~~~~~~~~~~~l~gGedye-Ll~tv~~~~~~~~~~~~~~~gi~~~~IG~v~~~~gv~l  303 (320)
T PRK05731        237 ADALPVSAALAALGEDALRWALSGGEDYE-LLFTVPPENRGALLAAAKKLGVGVTIIGRVAGGEGVLL  303 (320)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHCCCCCEE-EEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEE
T ss_conf             88789875665535549998316787336-99998899999999999975989699999984884799


No 32 
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00  E-value=3.8e-33  Score=246.21  Aligned_cols=287  Identities=20%  Similarity=0.269  Sum_probs=206.3

Q ss_pred             HHHHHHHCCCCEEECCCCCEEEEEECCCEEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf             997512069748993347736898369839999951788-7776588887210558102257677874368775045787
Q gi|254780970|r   56 WLRTLPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHN-HPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGA  134 (737)
Q Consensus        56 ~l~~~~~~~~~vi~~~~~~a~vi~~~~~~~~~~k~EtHN-hPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~  134 (737)
                      .-+.|..+...++..-+|||+++..++++ +++.+++|. +|++. ||--.---+-|.+||+..|||||++++.++.+.+
T Consensus        20 i~~~~~~~~~~~~l~~~dDaa~~~~~~~~-iv~ttDg~~~~~~~f-P~~~G~~av~~tvnDla~mGA~P~~l~~~~~l~e   97 (346)
T cd02691          20 LAELIGKTGEVSIVAQDDDAGVDAADVEY-IVVAIDGIHSRLSDF-PFLAGFHATRAALRDVMVMGARPVALLSDIHLAD   97 (346)
T ss_pred             HHHHHHHCCCCCCCCCCCCEEEECCCCCE-EEEEECCEEECCCCC-CCCCHHHEEEEEHHHHHHCCCCCCEEEEEEEECC
T ss_conf             99998653686444567864675379957-999947778556668-5112133476556667764884330389999669


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC---CCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf             568638889988874588665430872113203552156---76642211221121135543112256897799965765
Q gi|254780970|r  135 IHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCY---NNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKT  211 (737)
Q Consensus       135 ~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y---~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~t  211 (737)
                      --   ....+...++|++.++++.|+|+|+|+|...+..   ..++..+++++|+.+...+.+ +..+|||.|++.|   
T Consensus        98 g~---~~~~L~~i~~~m~~aa~~~gV~iV~GdT~vv~gd~v~g~~i~~~v~~iGv~~~~~~~~-~~ArpGD~Ilvsg---  170 (346)
T cd02691          98 DG---DVGKLFDFTAGVTAVSEATGVPLVAGSTLRIGGDMVLGDRLVGGVGAVGRSKSDPSRR-KNAEPGDLILMTE---  170 (346)
T ss_pred             CC---CHHHHHHHHHHHHHHHHHCCCCEEECCCEEECCCCEEEEEEEEEEEEEEECCCCCCCC-CCCCCCCEEEEEC---
T ss_conf             99---9999999999999999985998971473683699466436899888877404776411-4799999999978---


Q ss_pred             CCCCCHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf             64441046666777286533-34443326798999888999874011383011034775201112233201477528996
Q gi|254780970|r  212 GRDGIGGASMASEEFGENIA-KKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLD  290 (737)
Q Consensus       212 g~dGi~Ga~~sS~~~~~~~~-~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~  290 (737)
                         |+||.+++...+.+..+ ....+.+..+...-+.+++    ......|++|+|++.|||++++.|||.+||+|++||
T Consensus       171 ---giGg~~ia~~a~~~g~~~~~~et~~~~~~~~~~~l~~----~~l~~~IhaMrD~TrGGLa~~LnEiA~~SgVgi~Id  243 (346)
T cd02691         171 ---GAGGGTITTTAIYHGMPDVVEETLNVDFIKACEALRD----SGLVSKVHSMTDVTNGGIRGDALEISKTAGVSLVFD  243 (346)
T ss_pred             ---CCCCHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHH----HHHHCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             ---8784178899987146432100012046788999998----531047338776862458889999998669759997


Q ss_pred             EHHH--CCCCCCCCHHHHH----HCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCC
Q ss_conf             2022--0466789998986----178885089999546758899988870971311221210443100025864
Q gi|254780970|r  291 LDKV--PTCEEGMTAYEMM----LSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEE  358 (737)
Q Consensus       291 l~~v--p~~~~~l~~~ei~----~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~  358 (737)
                      .++|  |++.+-....|+|    ++.|+|+++++++|++.+++.+.++++++++++||+||+.....+..+++.
T Consensus       244 ee~I~~pv~p~V~~~cE~LgiDPL~vaneg~Lii~p~e~~~~i~~~l~~~Gv~a~~IG~V~~g~~~~l~~~g~~  317 (346)
T cd02691         244 EEKVRSLINPKVLKMLEELGIDPLGVSLDSLMIIAPEEDAVDIIRTLREAGVRADEVGRVEEGRGVPLVVTGEG  317 (346)
T ss_pred             HHHCCCCCCHHHHHHHHHHCCCHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCC
T ss_conf             67704656889999999859870102556269996677889999999876997389999984896178638961


No 33 
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=100.00  E-value=2.1e-31  Score=234.24  Aligned_cols=252  Identities=22%  Similarity=0.275  Sum_probs=178.1

Q ss_pred             CCCCCCCCCCCEEEECCCCCCEEEEECCCC---C-CCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             100001357631420377762279730453---2-100001001135678977764102785102232210245666862
Q gi|254780970|r  428 NSIQLPGGDAGVIRVEGHETKALAFSSDVT---P-RYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEE  503 (737)
Q Consensus       428 ~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~---p-~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e  503 (737)
                      +.++.||+||||++..   ++.+++|+|..   . .....+||..|+.+|+.+++||+||||+|++++.++.++.  +.+
T Consensus        18 ~~~~g~GDDaavi~~~---~~~lv~ttD~~~e~~hf~~~~~p~~iG~~av~~nlSDIaamGa~P~~~~~sl~lp~--~~~   92 (291)
T cd02194          18 GVLLGIGDDAAVLKPP---GGRLVVTTDTLVEGVHFPPDTTPEDIGWKALAVNLSDLAAMGARPLGFLLSLGLPP--DTD   92 (291)
T ss_pred             CCCCCCCCCEEEEEEC---CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC--CCC
T ss_conf             8535898887999609---97699996665466668999998999999999888889873896123577650689--998


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCC
Q ss_conf             13469999999985221028866544320011236866676311122223335202331021438980751377665543
Q gi|254780970|r  504 IMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLD  583 (737)
Q Consensus       504 ~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~Lg  583 (737)
                      ..| +.+.++|+.++|+++|++++||+.+.      .+ ..+..++++|.++. .+.++...+++||.|+++|..+    
T Consensus        93 ~~~-l~~i~~Gi~~~~~~~gv~ivGGdt~~------~~-~~~i~vt~iG~~~~-~~~i~r~~ak~GD~i~vtg~~G----  159 (291)
T cd02194          93 EEW-LEEFYRGLAEAADRYGVPLVGGDTTS------GS-ELVISVTALGEVEK-GKPLRRSGAKPGDLLYVTGTLG----  159 (291)
T ss_pred             HHH-HHHHHHHHHHHHHHHCCCEEECCCCC------CC-CEEEEEEEEEEECC-CCEEECCCCCCCCEEEEECCCC----
T ss_conf             999-99999999999998698066134123------56-54899999999768-8434115799899799946742----


Q ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHH------HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCC-
Q ss_conf             267888861167899964798999999------9999999995980699464865799999999845897089980566-
Q gi|254780970|r  584 CSMYSLECASSNIGPPPKVDCHLEKNH------GFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIE-  656 (737)
Q Consensus       584 gS~~~~~~~~~~~g~~p~~d~~~~k~~------~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~-  656 (737)
                      .+.......................++      .... ..+.++.++||||+|| ||+.+|.|||.+|++|++|+++.. 
T Consensus       160 ~~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~-~~l~~~~v~a~~DiSd-GL~~~l~eia~~S~vg~~I~~~~ip  237 (291)
T cd02194         160 DAAAGLALLLGGLKLPEELYEELIERHLRPEPRLELG-RALAEGLATAMIDISD-GLLADLGHIAEASGVGAVIDLDKLP  237 (291)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCEEEEEHHHCC
T ss_conf             7799999996688777225799999864888529999-9998500044521005-7999999999984980998588689


Q ss_pred             ---------CCCCHHHHHHC--CCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             ---------68987888729--883218999968809989999985798499989987
Q gi|254780970|r  657 ---------IEKDPKPFLFG--EDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVS  703 (737)
Q Consensus       657 ---------~~~d~~~~LFs--Es~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt  703 (737)
                               ...++++++++  |++. +|++|++++.+   +.+++.++++++||+||
T Consensus       238 ~~~~~~~~~~~~~~~~~~l~gGedy~-ll~tv~~~~~~---~~~~~~~~~~~~IG~vt  291 (291)
T cd02194         238 LSPALRAAELGEDALELALSGGEDYE-LLFTVPPENAE---AAAAKLGVPVTVIGRVT  291 (291)
T ss_pred             CCHHHHHHHCCCCHHHHHHHCCCCEE-EEEEECHHHHH---HHHHHCCCCEEEEEEEC
T ss_conf             99899987629999999970997407-99997789999---99987398958998869


No 34 
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=100.00  E-value=2.7e-31  Score=233.46  Aligned_cols=280  Identities=26%  Similarity=0.431  Sum_probs=211.9

Q ss_pred             CEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCC--CCCCCC---CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCH
Q ss_conf             489933477368983698399999517887776588--887210---558102257677874368775045787568638
Q gi|254780970|r   66 HVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEP--YQGAAT---GVGGILRDIFTMGARPVAAMNSLRFGAIHHPKT  140 (737)
Q Consensus        66 ~vi~~~~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P--~~GAaT---g~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~~  140 (737)
                      .+....+||++.++++++ .++|+-.+|    .++|  |+|---   .+-|..+|+..|||+|.+++..|..+.--   +
T Consensus        32 ~v~~~~g~D~~~i~l~~~-~la~tTD~~----~i~P~ff~~~diG~lAV~gt~NDlav~GA~P~~l~~~lil~eg~---~  103 (339)
T COG0309          32 NVGLANGEDAAIIDLGDG-VLAFTTDPF----VIDPLFFPGGDIGKLAVHGTANDVAVSGAKPRYLSVGLILPEGL---P  103 (339)
T ss_pred             CCCCCCCCCEEEEECCCC-EEEEEECCE----EECCCCCCCCCEEEEEEEEEHHHHHHCCCCCEEEEEEEECCCCC---C
T ss_conf             548655664113403784-699981880----75466457886289999986225440589860026777358999---8


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHH
Q ss_conf             88998887458866543087211320355215676642211221121135543112256897799965765644410466
Q gi|254780970|r  141 KHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGAS  220 (737)
Q Consensus       141 ~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~  220 (737)
                      ..-+..+.+.+..-.+++|+++|+|+|...+....++.++..++|++..+..++....+|||.||+.|    -.|+||++
T Consensus       104 ~e~l~~i~~si~e~a~~~Gv~IvtGdTkV~~~~~~~~vi~tT~iG~~~~~~~v~~~~~~~GD~vI~tg----~~g~hga~  179 (339)
T COG0309         104 IEDLERILKSIDEEAEEAGVSIVTGDTKVVPGGKDPIVINTTGIGIIDKEILVSPSGARPGDAVIVTG----TIGIHGAS  179 (339)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEECC----CHHHHHHH
T ss_conf             78999999999999998397498267666159987728986467751377601457899888899818----81688999


Q ss_pred             HHHHHHCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCC
Q ss_conf             667772865----3334443326798999888999874011383011034775201112233201477528996202204
Q gi|254780970|r  221 MASEEFGEN----IAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPT  296 (737)
Q Consensus       221 ~sS~~~~~~----~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~  296 (737)
                      .-...+++.    .++|..++   .... +..+..+.+....- |++|||.+.|||++++.|||.+||+|+.|+.++||+
T Consensus       180 ila~~~~~~l~~~l~sD~~~~---~~~~-~~~l~~~~~~~~~~-vtAMhDaTrGGla~aLnEmA~aSgvgi~I~ee~Ipv  254 (339)
T COG0309         180 ILAHRFGEELETELGSDCAPL---AKLV-KALLSVVGEALAAA-VTAMHDATRGGLAGALNEMAEASGVGISIEEEKIPV  254 (339)
T ss_pred             HHHHHCCHHHCCCHHHHHHHH---HHHH-HHHHHCCHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             998752022033235667888---9999-98862005776656-765038753678899999999749849996246666


Q ss_pred             CCC--------CCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHC-CEEECCCCEEECCC-CCC--CCCCCCCCCCCC
Q ss_conf             667--------899989861788850899995467588999888709-71311221210443-100--025864434432
Q gi|254780970|r  297 CEE--------GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWG-LHFSIIGITTNDKL-FRV--IHRGEEVANLPI  364 (737)
Q Consensus       297 ~~~--------~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~-~~~~~iG~vt~~~~-~~v--~~~g~~v~dlp~  364 (737)
                      +++        |++||++. ||.  .++++|+|++.+++++.+++++ .++++||+|++++. ..+  .++++.+++.|.
T Consensus       255 ~~eVr~vce~lGiDPl~~a-nEG--~lv~~V~~~~a~~~l~~L~~~~~~~A~iIGeV~~~~~~v~l~~~~G~~r~l~~P~  331 (339)
T COG0309         255 REEVRGVCELLGLDPLELA-NEG--KLVIAVPPEHAEEVLEALRSHGLKDAAIIGEVVEEKGGVGLETAGGGKRILEPPE  331 (339)
T ss_pred             CHHHHHHHHHHCCCHHHHH-CCC--EEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCEEECCCCC
T ss_conf             4899999998398878872-586--0999978899999999998649954226899832688379995477257668887


Q ss_pred             C
Q ss_conf             1
Q gi|254780970|r  365 K  365 (737)
Q Consensus       365 ~  365 (737)
                      .
T Consensus       332 ~  332 (339)
T COG0309         332 G  332 (339)
T ss_pred             C
T ss_conf             6


No 35 
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis.  HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=99.98  E-value=1e-30  Score=229.61  Aligned_cols=257  Identities=23%  Similarity=0.335  Sum_probs=180.9

Q ss_pred             CCCCCCCCCCCCEEEECCCCCCEEEEECCC---CCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             110000135763142037776227973045---32100001001135678977764102785102232210245666862
Q gi|254780970|r  427 SNSIQLPGGDAGVIRVEGHETKALAFSSDV---TPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEE  503 (737)
Q Consensus       427 g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~---~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e  503 (737)
                      ++.++..|+|||++++..  ++ +++|+|.   +|++.  .+..-+++||+-+++||++||++|+++++++.++.- .+.
T Consensus        19 ~~~~lgigdDaAvi~~~~--~~-lvvttD~~v~~p~~f--~~~diG~~Av~~~~sDIaamGa~P~~~l~sl~lp~~-~~~   92 (293)
T cd02197          19 DNPILEVLEDAAALLVGG--GR-LAFTTDSFVVSPLFF--PGGDIGKLAVCGTVNDLAMMGAKPLYLSLGFILEEG-FPL   92 (293)
T ss_pred             CCCCCCCCCCEEEECCCC--CE-EEEEECCCCCCCCCC--CCCCHHHHHHHCCHHHHHHCCCCCHHHEEEEECCCC-CCH
T ss_conf             986678888769861699--84-999936542277528--984473787521287898659975676375655899-999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCC
Q ss_conf             13469999999985221028866544320011236866676311122223335202331021438980751377665543
Q gi|254780970|r  504 IMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLD  583 (737)
Q Consensus       504 ~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~Lg  583 (737)
                        ..|.+.++|+.++|+++|++++||+.+.+.++....  ....++++|.++. .+.+++..+++||.|+++|..+.+ |
T Consensus        93 --~~l~~i~~Gi~~~~~~~gv~iVGGdT~v~~~~~~~~--l~is~t~iG~v~~-~~~~~~~gA~pGD~iivTg~lG~~-g  166 (293)
T cd02197          93 --EDLERIVKSMAEAAREAGVKIVTGDTKVVPKGKADG--IFINTTGIGVIPR-GVIISPSNIRPGDKIIVSGTIGDH-G  166 (293)
T ss_pred             --HHHHHHHHHHHHHHHHHCCEEEECCEEECCCCCCCC--EEEEEEEEEEECC-CCCCCCCCCCCCCEEEEECCHHHH-H
T ss_conf             --999999999999999719768616627514787785--5998678898568-855035789999999996860788-9


Q ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-----
Q ss_conf             267888861167899964798999999999999999-59806994648657999999998458970899805666-----
Q gi|254780970|r  584 CSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMIN-AKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEI-----  657 (737)
Q Consensus       584 gS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~-~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~-----  657 (737)
                      .++++.. ...........|..   .+...+..+.. ...++||||+|+|||+.+|.|||.+|++|++|+.+..+     
T Consensus       167 ~~il~~r-~~~~~~~~~~~d~~---~~~~~~~~~l~~~~~v~Am~DiT~gGL~~~L~eia~aSgvg~~I~~~~iPv~~~v  242 (293)
T cd02197         167 AAILAAR-EGLGFETDIESDCA---PLNGLVEALLEAGPGIHAMRDPTRGGLAAVLNEIARASGVGIEIEEEAIPVREEV  242 (293)
T ss_pred             HHHHHHH-CCCCCCCHHHHHHH---HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf             9999852-46664401466666---6689999999707874474167975599999999998599399940368888899


Q ss_pred             -------CCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHC--CCCEEEEEEE
Q ss_conf             -------89878887298832189999688099899999857--9849998998
Q gi|254780970|r  658 -------EKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNK--NIPLRYLGKV  702 (737)
Q Consensus       658 -------~~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~--gi~~~~IG~V  702 (737)
                             ..||+.. .  +.|++|++|++++.+++++.++++  |+++++||+|
T Consensus       243 ~~~~e~lg~DPl~~-a--s~G~ll~~v~~e~a~~vl~~l~~~~~G~~A~iIGeV  293 (293)
T cd02197         243 RGACEMLGLDPLYL-A--NEGKFVAIVPPEDAEEVLEALRSHPLGKEAAIIGEV  293 (293)
T ss_pred             HHHHHHHCCCHHHH-H--CCCEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             99999859398788-3--485399998789999999999728889981898669


No 36 
>TIGR01379 thiL thiamine-monophosphate kinase; InterPro: IPR006283   This family represents thiamine-monophosphate kinase, an enzyme that converts thiamine monophosphate into thiamine pyrophosphate (TPP, coenzyme B1), an enzyme cofactor. Thiamine monophosphate may be derived from de novo synthesis or from unphosphorylated thiamine, known as vitamin B1. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step. ; GO: 0009030 thiamin phosphate kinase activity, 0009228 thiamin biosynthetic process.
Probab=99.97  E-value=1.4e-29  Score=221.73  Aligned_cols=261  Identities=23%  Similarity=0.276  Sum_probs=191.9

Q ss_pred             CCCCCCC-CCCCCCCCEEEECCCCCCEEEEECC---CCCCC-HHC-CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC
Q ss_conf             0001100-0013576314203777622797304---53210-000-1001135678977764102785102232210245
Q gi|254780970|r  424 MIQSNSI-QLPGGDAGVIRVEGHETKALAFSSD---VTPRY-VKA-DPFEGTKQAVAECWRNIIATGAKPLAITDNLNFG  497 (737)
Q Consensus       424 ~V~g~tv-~~Pg~DaaVv~~~~~~~~gia~s~g---~~p~~-~~~-dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~  497 (737)
                      .++..++ ...|+|||++....+  .-+++|+|   +.-+| ... .|+..|+.+|+-+++||+||||+|.+++.++.+ 
T Consensus        15 ~~~~~~~~~~~GDDAA~~~~~~~--~~lv~t~D~Lve~~HF~~~~~~Pe~~G~K~~avNlSDlAAmGA~P~~~~~s~~~-   91 (336)
T TIGR01379        15 LVKDDSVALGIGDDAALVSPPEG--EDLVLTTDTLVEGVHFPPDTTPPEDLGWKAVAVNLSDLAAMGATPKWFLLSLGL-   91 (336)
T ss_pred             CCCCCCCCCCCCCCEEEECCCCC--CEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEC-
T ss_conf             14787633247641231157999--638998702324757886778989999999997499997305702322310016-


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCC
Q ss_conf             66686213469999999985221028866544320011236866676311122223335202331021438980751377
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGN  577 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~  577 (737)
                       |++.+.. .+...++|+.+.|..|++++|||      +|+..   -+..+|++|.++.- ..++...+++||.|+++|.
T Consensus        92 -P~~~~~~-~~~~f~~G~~~~~~~Y~~~LiGG------DT~~~---~~~~~T~iG~~~~~-~~~~RsgAk~GD~v~VTG~  159 (336)
T TIGR01379        92 -PSDLDEA-WLEAFYDGLFELAKQYGVDLIGG------DTVKS---LVVTVTAIGEAPKG-RALLRSGAKPGDLVFVTGT  159 (336)
T ss_pred             -CCCCCHH-HHHHHHHHHHHHHHHCCCEEEEC------CCCCE---EEEEEEEEEEECCC-CEEECCCCCCCCEEEEECC
T ss_conf             -8898889-99999999999875539878724------40021---31434578975689-7332367877767899588


Q ss_pred             CCCCCCHHHHHHHHHCC-----CCCCCCC-CCHHHHHHHHH------HHHHHHHCCCEE--EEEECCCCHHHHHHHHHHH
Q ss_conf             66554326788886116-----7899964-79899999999------999999959806--9946486579999999984
Q gi|254780970|r  578 DGCHLDCSMYSLECASS-----NIGPPPK-VDCHLEKNHGF------FVLSMINAKKIT--ACHDISTGGLIITLAEMTI  643 (737)
Q Consensus       578 ~~~~LggS~~~~~~~~~-----~~g~~p~-~d~~~~k~~~~------~v~~li~~g~I~--S~HDiSdGGL~~aL~EMa~  643 (737)
                          +|-|.....+...     ....++. .+....+++..      ..+.|.+....+  |+.|||| ||+..|.++|-
T Consensus       160 ----lG~saaGL~ll~~G~~~~~~~~~~~~~~~~~~~r~l~P~PR~~~G~~l~~~~~a~W~Aa~D~SD-GL~~dL~hIa~  234 (336)
T TIGR01379       160 ----LGDSAAGLELLLKGKEEGKKKEVDEEDDEALLQRHLRPEPRVEEGLALARASLANWVAAIDVSD-GLASDLGHIAE  234 (336)
T ss_pred             ----CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHEHHHHCCCH-HHHHHHHHHHH
T ss_conf             ----3268999999973466402567785147999998638998289999997454332312122047-79999999997


Q ss_pred             CCCCCEEEEECCCC--------------CCCHHHH--HHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             58970899805666--------------8987888--72988321899996880998999998579849998998798
Q gi|254780970|r  644 SSAKGMDIILPIEI--------------EKDPKPF--LFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS  705 (737)
Q Consensus       644 as~~G~~I~L~~~~--------------~~d~~~~--LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~  705 (737)
                      +|+||++|+.+..+              ..++.++  -++|++. +|+|+++++.+.+..++...++++++||+|+..
T Consensus       235 AS~vg~~i~~~~LP~~~~~~~~~~~~~~~~~~~~~aL~gGEDyE-LvfT~~~~~~~~l~~~~~~~~v~~~~IG~v~~g  311 (336)
T TIGR01379       235 ASGVGIRIDLDKLPLSSELKEIADTEELGKQPLEWALSGGEDYE-LVFTVPPERREALLDALKALGVPLTRIGRVTEG  311 (336)
T ss_pred             HCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCEE-EEEECCHHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf             28962998526478708999886306310027999987288332-455158667889999997558766899999864


No 37 
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854    This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=99.97  E-value=9.7e-31  Score=229.69  Aligned_cols=290  Identities=25%  Similarity=0.390  Sum_probs=236.4

Q ss_pred             CHHHHHH-HHH-------CCCCEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCC--CCCCCCC---CCCCCCCCCCC
Q ss_conf             8899975-120-------697489933477368983698399999517887776588--8872105---58102257677
Q gi|254780970|r   53 SKKWLRT-LPT-------TGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEP--YQGAATG---VGGILRDIFTM  119 (737)
Q Consensus        53 ~~~~l~~-~~~-------~~~~vi~~~~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P--~~GAaTg---~gG~iRDi~~~  119 (737)
                      +..+++. |-.       .-.+++.+.-|||+++...++ .++|.-.||    -|+|  |+|=-=|   |=|-++|+.-|
T Consensus        13 ~~~Li~~lF~~R~l~~~R~f~n~~L~~~eDaA~l~~~g~-~la~sTDSf----Vv~PlFFpGGDIGkLAVcGTvNDvav~   87 (345)
T TIGR02124        13 MQQLIEELFLKRPLELKRAFGNEILAAMEDAAVLELSGG-RLAFSTDSF----VVDPLFFPGGDIGKLAVCGTVNDVAVS   87 (345)
T ss_pred             HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCEECCCCC-EEEEECCCE----EECCCCCCCCCCCCEEEECCHHHHHHC
T ss_conf             999988703468611201248750056677413217896-089980763----754633698671117773332467533


Q ss_pred             CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCCCCCCEEEECCCCHH--HHHHCC
Q ss_conf             87436877504578756863888998887458866543087211320355215-676642211221121135--543112
Q gi|254780970|r  120 GARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPC-YNNNIIVNTFAAGIAKTN--AIFSSK  196 (737)
Q Consensus       120 Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~-y~~~~~v~~~~~Gi~~~~--~~~~~~  196 (737)
                      ||||++++.+|=.-.   -=+..-|+.+++-++.-..+-|+++|+|+|..-|. -.+++-+|..++|+++..  ..++.+
T Consensus        88 GA~P~YLs~gfIlEE---Gfp~e~L~~iv~Sm~~~A~~aGV~iV~GDTKVV~kG~~D~iFINTtGiG~~~~~~v~~~~~~  164 (345)
T TIGR02124        88 GAKPLYLSCGFILEE---GFPIEDLERIVKSMAEAARKAGVKIVAGDTKVVEKGKVDGIFINTTGIGVVPSGGVIDISAH  164 (345)
T ss_pred             CCHHHHHCCCEEEEE---CCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCC
T ss_conf             844578507201340---78767899999999999997397689757353345775605881388888747843376535


Q ss_pred             CCCCCCEEEEECCCCCCCCCHHHHHHH-HH---HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCHHCCCCCCCC
Q ss_conf             256897799965765644410466667-77---28653334443326798999888999874011-38301103477520
Q gi|254780970|r  197 ARGIGLPLVYLGAKTGRDGIGGASMAS-EE---FGENIAKKRPTVQVGDPFTGKCLLEACLELMN-TDAVIAIQDMGAAG  271 (737)
Q Consensus       197 ~~~~Gd~ii~~G~~tg~dGi~Ga~~sS-~~---~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~-~~~i~~~~D~gaGG  271 (737)
                      ..+|||.||+    +|.+|-||++.-| ++   |+.+.++|.+++        ..|++.+++..- +--|++|.|.+.||
T Consensus       165 ~~~~GD~Ii~----sG~iG~HG~~Il~~Regl~f~~~i~SDCapL--------~~lv~~ll~~~g~~~~v~~~RD~TRGG  232 (345)
T TIGR02124       165 NIQPGDVIIV----SGSIGDHGAAILAVREGLGFETNIESDCAPL--------NGLVEALLAVGGYEPAVHAMRDATRGG  232 (345)
T ss_pred             CCCCCCEEEE----CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH--------HHHHHHHHHCCCCCCCCEEEECCCCCC
T ss_conf             4145766898----1684067899887650255256733327765--------899999984379871423761678550


Q ss_pred             HHHHHHHHHCCCCCCEEEEEHHHCCCCC--------CCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH--CCEEE-C
Q ss_conf             1112233201477528996202204667--------89998986178885089999546758899988870--97131-1
Q gi|254780970|r  272 LTCSAIEMGNQGNLGITLDLDKVPTCEE--------GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKW--GLHFS-I  340 (737)
Q Consensus       272 l~~a~~Ema~~~~~G~~i~l~~vp~~~~--------~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~--~~~~~-~  340 (737)
                      |+.++.|+|..+|.|++|+.++||++++        |++|+++. ||-  +.+++|+||+.++++++++.+  +.+|+ +
T Consensus       233 LA~vLNE~A~~sg~~i~l~E~~iPV~eeV~gaCE~LGldPl~lA-NEG--~~v~~V~~E~A~~vLe~lk~hp~G~~A~Yi  309 (345)
T TIGR02124       233 LAAVLNEIAESSGVGIELEEEKIPVKEEVKGACELLGLDPLYLA-NEG--KLVLAVPPEAAEKVLEILKSHPLGKDAAYI  309 (345)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHH-CCC--EEEEEECHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             47899999996199279985247883789999986170325420-476--289982837799999998607764332156


Q ss_pred             CCCEEECCCCCCC----CCCCCCCCCCCC
Q ss_conf             2212104431000----258644344321
Q gi|254780970|r  341 IGITTNDKLFRVI----HRGEEVANLPIK  365 (737)
Q Consensus       341 iG~vt~~~~~~v~----~~g~~v~dlp~~  365 (737)
                      ||+|++++.-+|+    |+++.++|+|.-
T Consensus       310 IG~V~e~~~~~V~l~t~~G~~R~ld~p~G  338 (345)
T TIGR02124       310 IGEVVEKKEGLVVLKTAYGGKRILDMPSG  338 (345)
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEECCCC
T ss_conf             30147379877999706884056553567


No 38 
>PRK00943 selenophosphate synthetase; Provisional
Probab=99.97  E-value=1.6e-29  Score=221.30  Aligned_cols=252  Identities=19%  Similarity=0.211  Sum_probs=180.1

Q ss_pred             CCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             35763142037776227973045321000010011356789777641027851022322102456668621346999999
Q gi|254780970|r  434 GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVK  513 (737)
Q Consensus       434 g~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~  513 (737)
                      +.||||+++.  +++.++.|+|+.+... -|||..+++|++.+++||++||++|+.....+.|+...-+.  ..+.+.++
T Consensus        49 ~dDaavi~~~--~~~~lv~T~D~f~piv-~Dp~~~G~IAa~~alsDi~AmGa~P~~aL~~~~~p~~~l~~--e~l~~il~  123 (347)
T PRK00943         49 RDDAAVYDLN--NGQAIVSTTDFFMPIV-DDPFDFGRIAATNAISDVYAMGGKPIMALAILGWPINVLPP--EVAREVLE  123 (347)
T ss_pred             CCCEEEEEEC--CCEEEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCH--HHHHHHHH
T ss_conf             7755899728--9808999804666775-68788899999985768988389488999884302021679--99999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHC
Q ss_conf             99852210288665443200112368666763111222233352023310214389807513776655432678888611
Q gi|254780970|r  514 GIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECAS  593 (737)
Q Consensus       514 gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS~~~~~~~~  593 (737)
                      |+.+.|++.|++++||+      |...+ -|....+++|.++ .++.++...+++||.|++++.-    |......... 
T Consensus       124 g~~~~~~e~gv~ivGGH------T~~~~-e~~ig~~v~G~~~-~~~~~~~~~a~~GD~liLTKpl----Gtgi~~~a~~-  190 (347)
T PRK00943        124 GGRDVCREAGIPLAGGH------SIDAP-EPIFGLAVTGVVH-PERVKRNAGAKAGDVLILTKPL----GIGVLTAAEK-  190 (347)
T ss_pred             HHHHHHHHCCCEEECCC------EEECC-CCEEEEEEEEEEC-CCCCCCCCCCCCCCEEEEECCC----CCHHHHHHHH-
T ss_conf             99999998599053465------67546-6525568986774-6323026888888889982575----0149999987-


Q ss_pred             CCCCCCCCCCHHHHHH----HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHH-------
Q ss_conf             6789996479899999----99999999995980699464865799999999845897089980566689878-------
Q gi|254780970|r  594 SNIGPPPKVDCHLEKN----HGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPK-------  662 (737)
Q Consensus       594 ~~~g~~p~~d~~~~k~----~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~~d~~-------  662 (737)
                        .+..+....+....    +.....++.....++||||+|+|||+.+|.|||.+|++|++|+.+..+-.+..       
T Consensus       191 --~~~~~~~~~~~a~~~m~~ln~~aa~l~~~~~v~A~tDvTgfGL~GhL~Ema~~S~v~~~i~~~~iPv~~~v~~l~~~g  268 (347)
T PRK00943        191 --KSLLDPEHQGLAIEVMCELNTPGARFALLPGVHAMTDVTGFGLLGHLLEMARGSGVQARIDYAAIPRLPGVEELIALG  268 (347)
T ss_pred             --CCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCC
T ss_conf             --368999999999999985358999997534996222145335899999987258965999748876654599999868


Q ss_pred             -------------------------HHHHC-CCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             -------------------------88729-88321899996880998999998579849998998798
Q gi|254780970|r  663 -------------------------PFLFG-EDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS  705 (737)
Q Consensus       663 -------------------------~~LFs-Es~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~  705 (737)
                                               ..||. ++.|.++++|++++.+++++.+++.|+++.+||+|++.
T Consensus       269 ~~~~~~~~N~~~~~~~~~~~~~~~~~ll~DPQTSGGLLiaV~~e~a~~~l~~L~~~G~~aa~IG~V~e~  337 (347)
T PRK00943        269 CVPGGTGRNFASYGHLMGELPREQRALLCDPQTSGGLLVAVAPEAEDEVLATFAEFGIELAAIGELVEA  337 (347)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             987521778987632144566466753438557776799985999999999999679996799999967


No 39 
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=99.97  E-value=6.8e-29  Score=217.04  Aligned_cols=270  Identities=21%  Similarity=0.277  Sum_probs=190.6

Q ss_pred             HHCCCCCCC-CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC
Q ss_conf             311210001-1000013576314203777622797304532100001001135678977764102785102232210245
Q gi|254780970|r  419 EQYDTMIQS-NSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFG  497 (737)
Q Consensus       419 ~qyD~~V~g-~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~  497 (737)
                      ++++....+ ...+.-|+||||+++.  +++.+..+-|..+++...||++.++++|.-.++|+++||++|++++|.+.-.
T Consensus        27 ~~~~~~~~~~~~~l~~GDDAavI~v~--~~~lliaadGi~g~l~~~dPw~aG~csvLVn~~DV~amGG~Pv~~vd~isa~  104 (324)
T COG2144          27 REFLDEFYGAEVILDFGDDAAVIRVG--DGKLLIAADGIWGKLIDADPWWAGYCSVLVNVNDVAAMGGEPVGAVDAISAK  104 (324)
T ss_pred             HHCCHHHCCCCCCCCCCCCEEEEEEC--CCEEEEECCCCCCCCCCCCCHHHHCEEEEEEEHHHHHHCCCCEEEEEEEECC
T ss_conf             62123433555311147834799608--9679996577643234557233302069986013355179614888864348


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCC
Q ss_conf             66686213469999999985221028866544320011236866676311122223335202331021438980751377
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGN  577 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~  577 (737)
                      +   .+   |-.++++||++.++.||+|++||      +|+...-++.+.+...|++ +.+.++++..+++||+|+++++
T Consensus       105 s---~d---~~~ei~eglr~~a~kfgvpivGG------hthpd~~y~vl~v~i~gl~-~~e~Ii~s~~Ak~GD~lI~~~d  171 (324)
T COG2144         105 S---ED---QAREILEGLRKGARKFGVPIVGG------HTHPDTPYCVLDVVIGGLI-AEEPIITSGTAKPGDLLIFVGD  171 (324)
T ss_pred             C---HH---HHHHHHHHHHHHHHHCCCCEECC------CCCCCCCCCEEEEEEECCC-CCCCCCCCCCCCCCCEEEEEEC
T ss_conf             7---89---99999999998888549853467------1588877764446874023-6542303689886877999961


Q ss_pred             CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             66554326788886116789996479899999999999999959806994648657999999998458970899805666
Q gi|254780970|r  578 DGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEI  657 (737)
Q Consensus       578 ~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~  657 (737)
                      -...    .|-.  .-........-....++++++++.++++  ++.|+.|+|.||++.+|++||.+|++|+.++|++.+
T Consensus       172 ~~g~----~~p~--~P~~wDttt~ka~~~~~~~~e~l~e~a~--l~~AgKDvS~gG~iGtl~mlle~S~~ga~vdl~siP  243 (324)
T COG2144         172 LDGK----PYPN--FPLNWDTTTMKAKEKFRAQLELLREGAK--LVKAGKDVSNGGLLGTLLMLLEKSRVGAGVDLDSIP  243 (324)
T ss_pred             CCCC----CCCC--CCCCCCCEEECCHHHHHHHHHHHHHHHH--HHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             4787----4889--8855531231068889989999999999--875404566750789999999862368436523468


Q ss_pred             C---CCHHHHHHCCCCC-CEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC-EEEEECC
Q ss_conf             8---9878887298832-1899996880998999998579849998998798-6898074
Q gi|254780970|r  658 E---KDPKPFLFGEDQG-RYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS-TLSIHNI  712 (737)
Q Consensus       658 ~---~d~~~~LFsEs~G-r~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~-~l~i~~~  712 (737)
                      .   .|..+||-. .+| .|+++|+|++++++...|.+.+++++.||+|..+ .+.|.+.
T Consensus       244 ~p~~vd~~~wlk~-ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~GeVie~~~L~i~~~  302 (324)
T COG2144         244 YPADVDFRQWLKR-YPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIEEPVLRIGDG  302 (324)
T ss_pred             CCCCCCHHHHHHH-CCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECC
T ss_conf             8655547789983-8997479996889999999999875996587888603766897257


No 40 
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=99.97  E-value=3.5e-29  Score=219.02  Aligned_cols=296  Identities=20%  Similarity=0.325  Sum_probs=210.4

Q ss_pred             CCCCCCCCC-HHHHHHH--HHCCCCEEECCCCCEEEEEECCCEEEEEEECCCCCCCCC--CCCC-CCCCCCCCCCCCCCC
Q ss_conf             011074458-8999751--206974899334773689836983999995178877765--8888-721055810225767
Q gi|254780970|r   45 NEHCSYKSS-KKWLRTL--PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYI--EPYQ-GAATGVGGILRDIFT  118 (737)
Q Consensus        45 SEHC~~k~~-~~~l~~~--~~~~~~vi~~~~~~a~vi~~~~~~~~~~k~EtHNhPs~i--~P~~-GAaTg~gG~iRDi~~  118 (737)
                      =||--+|.. +...+.+  ...+-.++..+||||+||+++++. +++-+|-- -|+-+  +||. |.-|=..- ..||.+
T Consensus        13 ~egIlrk~~i~~~v~~~~~~~~~~~~~l~~GDDAavI~v~~~~-lliaadGi-~g~l~~~dPw~aG~csvLVn-~~DV~a   89 (324)
T COG2144          13 FEGILRKNPIKDAVREFLDEFYGAEVILDFGDDAAVIRVGDGK-LLIAADGI-WGKLIDADPWWAGYCSVLVN-VNDVAA   89 (324)
T ss_pred             HHCHHHCCCHHHHHHHCCHHHCCCCCCCCCCCCEEEEEECCCE-EEEECCCC-CCCCCCCCCHHHHCEEEEEE-EHHHHH
T ss_conf             6331312526888862123433555311147834799608967-99965776-43234557233302069986-013355


Q ss_pred             CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCC
Q ss_conf             78743687750457875686388899888745886654308721132035521567664221122112113554311225
Q gi|254780970|r  119 MGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKAR  198 (737)
Q Consensus       119 ~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~  198 (737)
                      ||++|++++|.+.-.+      ..+..++.+|++...-+||+|++||+++.|..|+  . ..+..+|++..+.++++..+
T Consensus        90 mGG~Pv~~vd~isa~s------~d~~~ei~eglr~~a~kfgvpivGGhthpd~~y~--v-l~v~i~gl~~~e~Ii~s~~A  160 (324)
T COG2144          90 MGGEPVGAVDAISAKS------EDQAREILEGLRKGARKFGVPIVGGHTHPDTPYC--V-LDVVIGGLIAEEPIITSGTA  160 (324)
T ss_pred             HCCCCEEEEEEEECCC------HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC--E-EEEEEECCCCCCCCCCCCCC
T ss_conf             1796148888643487------8999999999998888549853467158887776--4-44687402365423036898


Q ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHH
Q ss_conf             68977999657656444104666677728653334443326798999888999874011383011034775201112233
Q gi|254780970|r  199 GIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIE  278 (737)
Q Consensus       199 ~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~E  278 (737)
                      ++||.||++|--.||..=   +   .-++-+...-.      .|..-+..+++..+..+  |+++++|++.||+...+.+
T Consensus       161 k~GD~lI~~~d~~g~~~p---~---~P~~wDttt~k------a~~~~~~~~e~l~e~a~--l~~AgKDvS~gG~iGtl~m  226 (324)
T COG2144         161 KPGDLLIFVGDLDGKPYP---N---FPLNWDTTTMK------AKEKFRAQLELLREGAK--LVKAGKDVSNGGLLGTLLM  226 (324)
T ss_pred             CCCCEEEEEECCCCCCCC---C---CCCCCCCEEEC------CHHHHHHHHHHHHHHHH--HHHHCCCCCCCCHHHHHHH
T ss_conf             868779999614787488---9---88555312310------68889989999999999--8754045667507899999


Q ss_pred             HHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCC-EEEEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCCC
Q ss_conf             20147752899620220466789998986178885-08999954675889998887097131122121044310002586
Q gi|254780970|r  279 MGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQE-RMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGE  357 (737)
Q Consensus       279 ma~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQe-R~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~  357 (737)
                      |.++|.+|+.+||++||-- .+++ |+-|+--+.. -|+++|+|++++++.++|++.+|+++++|+|++++++++..+..
T Consensus       227 lle~S~~ga~vdl~siP~p-~~vd-~~~wlk~ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~GeVie~~~L~i~~~~~  304 (324)
T COG2144         227 LLEKSRVGAGVDLDSIPYP-ADVD-FRQWLKRYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIEEPVLRIGDGEL  304 (324)
T ss_pred             HHHHHCCCCEEEECCCCCC-CCCC-HHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCH
T ss_conf             9986236843652346886-5554-7789983899747999688999999999987599658788860376689725740


Q ss_pred             C--CCCCCCCCCC
Q ss_conf             4--4344321014
Q gi|254780970|r  358 E--VANLPIKALS  368 (737)
Q Consensus       358 ~--v~dlp~~~L~  368 (737)
                      .  +-|+..+.++
T Consensus       305 ~~~~~d~e~~~i~  317 (324)
T COG2144         305 VSEVFDLEKERIT  317 (324)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             4322123221013


No 41 
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854    This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=99.95  E-value=5.3e-27  Score=204.05  Aligned_cols=260  Identities=25%  Similarity=0.378  Sum_probs=196.0

Q ss_pred             CCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHH-----HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
Q ss_conf             0011000013576314203777622797304532100001001-----13567897776410278510223221024566
Q gi|254780970|r  425 IQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFE-----GTKQAVAECWRNIIATGAKPLAITDNLNFGNP  499 (737)
Q Consensus       425 V~g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~-----ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P  499 (737)
                      +-++.++.-..|+|++...+   +-+|||||...    +||..     -+++||+-.+.|++.|||||+++|+.|..   
T Consensus        31 ~f~n~~L~~~eDaA~l~~~g---~~la~sTDSfV----v~PlFFpGGDIGkLAVcGTvNDvav~GA~P~YLs~gfIl---  100 (345)
T TIGR02124        31 AFGNEILAAMEDAAVLELSG---GRLAFSTDSFV----VDPLFFPGGDIGKLAVCGTVNDVAVSGAKPLYLSCGFIL---  100 (345)
T ss_pred             ECCCCCCCCCCCCCEECCCC---CEEEEECCCEE----ECCCCCCCCCCCCEEEECCHHHHHHCCCHHHHHCCCEEE---
T ss_conf             24875005667741321789---60899807637----546336986711177733324675338445785072013---


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEECCCCCCCCCEEECC
Q ss_conf             686213469999999985221028866544--32001123686667631112222333520-233102143898075137
Q gi|254780970|r  500 EKEEIMGQFVHSVKGIREACQILDFPIVSG--NVSFYNETNGQSIFPTPTIAGVGILPDYS-LMTRIDSAHEGDLILMIG  576 (737)
Q Consensus       500 ~~~e~~~ql~~av~gl~d~c~~lgipivgG--kvSl~n~t~~~~I~pTpvi~~vG~v~d~~-~~it~~~k~~Gd~I~liG  576 (737)
                      |+---+-.|.+.++.|+++|++.|++||+|  ||-=..+.++.-|..    |++|.++... ..++.+..++||.|++.|
T Consensus       101 EEGfp~e~L~~iv~Sm~~~A~~aGV~iV~GDTKVV~kG~~D~iFINT----tGiG~~~~~~v~~~~~~~~~~GD~Ii~sG  176 (345)
T TIGR02124       101 EEGFPIEDLERIVKSMAEAARKAGVKIVAGDTKVVEKGKVDGIFINT----TGIGVVPSGGVIDISAHNIQPGDVIIVSG  176 (345)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEE----EEEEEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf             40787678999999999999973976897573533457756058813----88888747843376535414576689816


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC----CEEEEEECCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             766554326788886116789996479899999999999999959----8069946486579999999984589708998
Q gi|254780970|r  577 NDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAK----KITACHDISTGGLIITLAEMTISSAKGMDII  652 (737)
Q Consensus       577 ~~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g----~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~  652 (737)
                      .-++| |.++++.. .+......-.-|++.+..+..   .+.+.+    .|++++|.|+|||+++|.|+|.+|++|+.|+
T Consensus       177 ~iG~H-G~~Il~~R-egl~f~~~i~SDCapL~~lv~---~ll~~~g~~~~v~~~RD~TRGGLA~vLNE~A~~sg~~i~l~  251 (345)
T TIGR02124       177 SIGDH-GAAILAVR-EGLGFETNIESDCAPLNGLVE---ALLAVGGYEPAVHAMRDATRGGLAAVLNEIAESSGVGIELE  251 (345)
T ss_pred             CCHHH-HHHHHHHH-HCCCCCCCCCCHHHHHHHHHH---HHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             84067-89988765-025525673332776589999---99843798714237616785504789999999619927998


Q ss_pred             ---ECCC---------CCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHC--CCCEE-EEEEECCCE
Q ss_conf             ---0566---------689878887298832189999688099899999857--98499-989987986
Q gi|254780970|r  653 ---LPIE---------IEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNK--NIPLR-YLGKVSGST  706 (737)
Q Consensus       653 ---L~~~---------~~~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~--gi~~~-~IG~Vt~~~  706 (737)
                         ||..         .+.||+. |=||  |.+|+.|++|+.++++++++++  |-.+. .||+|+++.
T Consensus       252 E~~iPV~eeV~gaCE~LGldPl~-lANE--G~~v~~V~~E~A~~vLe~lk~hp~G~~A~YiIG~V~e~~  317 (345)
T TIGR02124       252 EEKIPVKEEVKGACELLGLDPLY-LANE--GKLVLAVPPEAAEKVLEILKSHPLGKDAAYIIGEVVEKK  317 (345)
T ss_pred             ECCCCCCHHHHHHHHHHCCCHHH-HHCC--CEEEEEECHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
T ss_conf             52478837899999861703254-2047--628998283779999999860776433215630147379


No 42 
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=99.95  E-value=2e-26  Score=200.15  Aligned_cols=291  Identities=15%  Similarity=0.188  Sum_probs=190.2

Q ss_pred             CCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf             11000013576314203777622797304532100001001135678977764102785102232210245666862134
Q gi|254780970|r  427 SNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMG  506 (737)
Q Consensus       427 g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~  506 (737)
                      .+++..-++|++++...   ++-+++|+|........-|+..++.||.-+++||++|||+|++++.++.+...   -...
T Consensus        29 ~~~~l~~~dDaa~~~~~---~~~iv~ttDg~~~~~~~fP~~~G~~av~~tvnDla~mGA~P~~l~~~~~l~eg---~~~~  102 (346)
T cd02691          29 EVSIVAQDDDAGVDAAD---VEYIVVAIDGIHSRLSDFPFLAGFHATRAALRDVMVMGARPVALLSDIHLADD---GDVG  102 (346)
T ss_pred             CCCCCCCCCCEEEECCC---CCEEEEEECCEEECCCCCCCCCHHHEEEEEHHHHHHCCCCCCEEEEEEEECCC---CCHH
T ss_conf             86444567864675379---95799994777855666851121334765566677648843303899996699---9999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCC---CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCC
Q ss_conf             69999999985221028866544320011236---8666---76311122223335202331021438980751377665
Q gi|254780970|r  507 QFVHSVKGIREACQILDFPIVSGNVSFYNETN---GQSI---FPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGC  580 (737)
Q Consensus       507 ql~~av~gl~d~c~~lgipivgGkvSl~n~t~---~~~I---~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~  580 (737)
                      .|.+.+.+|..+|+++|+|+|+|      +|.   +..+   ..|-.++++|....  ..+....+++||.|++.+..+.
T Consensus       103 ~L~~i~~~m~~aa~~~gV~iV~G------dT~vv~gd~v~g~~i~~~v~~iGv~~~--~~~~~~~ArpGD~IlvsggiGg  174 (346)
T cd02691         103 KLFDFTAGVTAVSEATGVPLVAG------STLRIGGDMVLGDRLVGGVGAVGRSKS--DPSRRKNAEPGDLILMTEGAGG  174 (346)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEC------CCEEECCCCEEEEEEEEEEEEEEECCC--CCCCCCCCCCCCEEEEECCCCC
T ss_conf             99999999999999859989714------736836994664368998888774047--7641147999999999788784


Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC-C
Q ss_conf             543267888861167899964798999999999999999598069946486579999999984589708998056668-9
Q gi|254780970|r  581 HLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIE-K  659 (737)
Q Consensus       581 ~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~-~  659 (737)
                      + +...++. +.+...-.....+.... .....+.+....+.|++++|+|+|||+++|.|||.+|++|+.|+.+..+. .
T Consensus       175 ~-~ia~~a~-~~g~~~~~~et~~~~~~-~~~~~l~~~~l~~~IhaMrD~TrGGLa~~LnEiA~~SgVgi~Idee~I~~pv  251 (346)
T cd02691         175 G-TITTTAI-YHGMPDVVEETLNVDFI-KACEALRDSGLVSKVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRSLI  251 (346)
T ss_pred             H-HHHHHHH-HCCCCCCCHHCCCHHHH-HHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEHHHCCCCC
T ss_conf             1-7889998-71464321000120467-8899999853104733877686245888999999866975999767704656


Q ss_pred             CH--H---HHH----HCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECC-CE-EEEECCEECCH-HHHHHHHHHH
Q ss_conf             87--8---887----298832189999688099899999857984999899879-86-89807412149-9999999999
Q gi|254780970|r  660 DP--K---PFL----FGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSG-ST-LSIHNILNIPV-ATLQTKYESW  727 (737)
Q Consensus       660 d~--~---~~L----FsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~-~~-l~i~~~~~~~i-~~l~~~w~~~  727 (737)
                      +|  .   +.|    ++.+..++++.+++++.+++++.++++|+++.+||+|+. +. ..+.+.-..++ -..|+.-+.+
T Consensus       252 ~p~V~~~cE~LgiDPL~vaneg~Lii~p~e~~~~i~~~l~~~Gv~a~~IG~V~~g~~~~l~~~g~~~~~~p~fre~~yt~  331 (346)
T cd02691         252 NPKVLKMLEELGIDPLGVSLDSLMIIAPEEDAVDIIRTLREAGVRADEVGRVEEGRGVPLVVTGEGRELKPAFRESAYTP  331 (346)
T ss_pred             CHHHHHHHHHHCCCHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf             88999999985987010255626999667788999999987699738999998489617863896123672333568853


Q ss_pred             HHHHHCC
Q ss_conf             9987245
Q gi|254780970|r  728 FPEFISE  734 (737)
Q Consensus       728 l~~~~~~  734 (737)
                      .+|++.+
T Consensus       332 ~k~~~~~  338 (346)
T cd02691         332 IKKVVGE  338 (346)
T ss_pred             HHHHCCC
T ss_conf             5444177


No 43 
>PRK00943 selenophosphate synthetase; Provisional
Probab=99.94  E-value=7.4e-27  Score=203.07  Aligned_cols=282  Identities=19%  Similarity=0.306  Sum_probs=199.3

Q ss_pred             CCCCCCHHH----HHHHHH--CCCCEEECC--CCCEEEEEECCCEEEEEEECCCCCCCCCCCCC-C--CCCCCCCCCCCC
Q ss_conf             074458899----975120--697489933--47736898369839999951788777658888-7--210558102257
Q gi|254780970|r   48 CSYKSSKKW----LRTLPT--TGKHVIQGP--GENAGVVDIGGGDCVVFKMESHNHPSYIEPYQ-G--AATGVGGILRDI  116 (737)
Q Consensus        48 C~~k~~~~~----l~~~~~--~~~~vi~~~--~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P~~-G--AaTg~gG~iRDi  116 (737)
                      |.-|-....    |+.++.  ..++++.|+  +|||+|+++.++..++.++... .|--=+||. |  |+.   +.+.|+
T Consensus        17 Cg~Kv~~~~L~~~L~~~~~~~~~~~~lvg~~~~dDaavi~~~~~~~lv~T~D~f-~piv~Dp~~~G~IAa~---~alsDi   92 (347)
T PRK00943         17 CGCKISPKVLETILKGEQAKFLDPDLLVGNETRDDAAVYDLNNGQAIVSTTDFF-MPIVDDPFDFGRIAAT---NAISDV   92 (347)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEEECCC-CCCCCCHHHHHHHHHH---HHHHHH
T ss_conf             227569899999997364557894301179987755899728980899980466-6775687888999999---857689


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCC
Q ss_conf             67787436877504578756863888998887458866543087211320355215676642211221121135543112
Q gi|254780970|r  117 FTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSK  196 (737)
Q Consensus       117 ~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~  196 (737)
                      .+||++|+..+..+.|+....  ..+.+..+.+|+.+-.++.|++++|||+..++    .|.......|+++.+++.+..
T Consensus        93 ~AmGa~P~~aL~~~~~p~~~l--~~e~l~~il~g~~~~~~e~gv~ivGGHT~~~~----e~~ig~~v~G~~~~~~~~~~~  166 (347)
T PRK00943         93 YAMGGKPIMALAILGWPINVL--PPEVAREVLEGGRDVCREAGIPLAGGHSIDAP----EPIFGLAVTGVVHPERVKRNA  166 (347)
T ss_pred             HHCCCCHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHHCCCEEECCCEEECC----CCEEEEEEEEEECCCCCCCCC
T ss_conf             883894889998843020216--79999999999999999859905346567546----652556898677463230268


Q ss_pred             CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHH
Q ss_conf             25689779996576564441046666777286533344433267989998889998740113830110347752011122
Q gi|254780970|r  197 ARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSA  276 (737)
Q Consensus       197 ~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~  276 (737)
                      ..+|||.||+.+    -.|.|....+.+.-.-..+....++    -.|.+ +.....++..+..+++|||++.+||+..+
T Consensus       167 ~a~~GD~liLTK----plGtgi~~~a~~~~~~~~~~~~~a~----~~m~~-ln~~aa~l~~~~~v~A~tDvTgfGL~GhL  237 (347)
T PRK00943        167 GAKAGDVLILTK----PLGIGVLTAAEKKSLLDPEHQGLAI----EVMCE-LNTPGARFALLPGVHAMTDVTGFGLLGHL  237 (347)
T ss_pred             CCCCCCEEEEEC----CCCCHHHHHHHHCCCCCHHHHHHHH----HHHHH-CCHHHHHHHHHCCCCEEECCCCCHHHHHH
T ss_conf             888888899825----7501499999873689999999999----99985-35899999753499622214533589999


Q ss_pred             HHHHCCCCCCEEEEEHHHCCCCCCC--------------------------CHH--HHHH-CCCCCEEEEEEECCCHHHH
Q ss_conf             3320147752899620220466789--------------------------998--9861-7888508999954675889
Q gi|254780970|r  277 IEMGNQGNLGITLDLDKVPTCEEGM--------------------------TAY--EMML-SESQERMLMILNPEKQHKA  327 (737)
Q Consensus       277 ~Ema~~~~~G~~i~l~~vp~~~~~l--------------------------~~~--ei~~-sEsQeR~~~~v~~~~~~~~  327 (737)
                      .||+..+++|++|++++||+.+.-.                          +.+  .+++ -++-.-++++|+|++.+++
T Consensus       238 ~Ema~~S~v~~~i~~~~iPv~~~v~~l~~~g~~~~~~~~N~~~~~~~~~~~~~~~~~ll~DPQTSGGLLiaV~~e~a~~~  317 (347)
T PRK00943        238 LEMARGSGVQARIDYAAIPRLPGVEELIALGCVPGGTGRNFASYGHLMGELPREQRALLCDPQTSGGLLVAVAPEAEDEV  317 (347)
T ss_pred             HHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEECHHHHHHH
T ss_conf             99872589659997488766545999998689875217789876321445664667534385577767999859999999


Q ss_pred             HHHHHHHCCEEECCCCEEECC
Q ss_conf             998887097131122121044
Q gi|254780970|r  328 QEILNKWGLHFSIIGITTNDK  348 (737)
Q Consensus       328 ~~i~~~~~~~~~~iG~vt~~~  348 (737)
                      ++.+++.+.++++||+||+..
T Consensus       318 l~~L~~~G~~aa~IG~V~e~~  338 (347)
T PRK00943        318 LATFAEFGIELAAIGELVEAR  338 (347)
T ss_pred             HHHHHHCCCCCEEEEEEEECC
T ss_conf             999996799967999999679


No 44 
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=99.94  E-value=3.7e-25  Score=191.47  Aligned_cols=262  Identities=22%  Similarity=0.269  Sum_probs=184.8

Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCC---C-CCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             565311210001100001357631420377762279730453---2-100001001135678977764102785102232
Q gi|254780970|r  416 WVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVT---P-RYVKADPFEGTKQAVAECWRNIIATGAKPLAIT  491 (737)
Q Consensus       416 ~i~~qyD~~V~g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~---p-~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait  491 (737)
                      .|-+.+.+..+.+.....|+|||++.+...  ..+++|+|..   . ......|+..|+.+++-+++||+||||+|.+++
T Consensus         8 lI~~~~~~~~~~~~~~~~GDDaA~v~~~~~--~~lvvttD~lv~~~hF~~~~~p~d~G~Ka~a~NlSDlAAMGa~P~~~~   85 (317)
T COG0611           8 LIKRYFKRRQREDVVLGIGDDAALVDAPEG--QRLVVTTDMLVEGTHFPPDMTPEDLGWKALAVNLSDLAAMGARPKAFL   85 (317)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCEEEEECCCC--CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHE
T ss_conf             999998403765533257776479815888--648999612125355699999999878999988889997488765342


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             21024566686213469999999985221028866544320011236866676311122223335202331021438980
Q gi|254780970|r  492 DNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDL  571 (737)
Q Consensus       492 ~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~  571 (737)
                      .++.+|. +-++.  .+....+|+.++|+.|++++|||      +|+..  +-+..++++|.++... .+....+++||.
T Consensus        86 lsl~lP~-~~d~~--~~~~~~~Gi~e~~~~y~~~lIGG------Dt~~~--~l~is~t~iG~~~~~~-~l~R~gAkpGD~  153 (317)
T COG0611          86 LSLGLPP-DLDEE--WLEALADGIFEAAKKYGVKLIGG------DTNRG--PLSISVTAIGVLPKGR-ALLRSGAKPGDL  153 (317)
T ss_pred             EEEECCC-CCCHH--HHHHHHHHHHHHHHHCCCEEECC------CCCCC--CEEEEEEEEEECCCCC-CEECCCCCCCCE
T ss_conf             6552899-99999--99999999999999829808643------36787--3589999999617874-100469999999


Q ss_pred             EEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH------HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             75137766554326788886116789996479899999999------999999959806994648657999999998458
Q gi|254780970|r  572 ILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGF------FVLSMINAKKITACHDISTGGLIITLAEMTISS  645 (737)
Q Consensus       572 I~liG~~~~~LggS~~~~~~~~~~~g~~p~~d~~~~k~~~~------~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as  645 (737)
                      |+++|..+.    |.....+...  ...+.......+++..      .-+.+..  ..+|+.|+|| ||+..|.+++.+|
T Consensus       154 v~vtG~lG~----saagl~ll~~--~~~~~~~~~l~~r~~~P~Prv~~g~~l~~--~a~aa~DiSD-GL~~dL~~i~~aS  224 (317)
T COG0611         154 VAVTGTLGR----SAAGLELLLN--VLGPEDEEELIERHLRPTPRVELGLALAK--LASAAMDISD-GLAADLGHIARAS  224 (317)
T ss_pred             EEECCCCCH----HHHHHHHHHC--CCCCCHHHHHHHHHCCCCCCHHHHHHHHH--HHHHHEECCH-HHHHHHHHHHHHC
T ss_conf             999188766----4899999961--46753038999984499997567899998--8777512306-5999999999982


Q ss_pred             CCCEEEEECCCC-----------CCCHHHH--HHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             970899805666-----------8987888--729883218999968809989999985798499989987
Q gi|254780970|r  646 AKGMDIILPIEI-----------EKDPKPF--LFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVS  703 (737)
Q Consensus       646 ~~G~~I~L~~~~-----------~~d~~~~--LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt  703 (737)
                      +||++|+....+           ..+++++  ..+|++. +++++++++.+.++.+++..+  +++||+++
T Consensus       225 ~vg~~I~~~~lp~~~~~~~~~~~~~~~~~~aL~gGEDyE-L~ft~p~~~~~~~~~~~~~~~--~~~IG~v~  292 (317)
T COG0611         225 GVGIVIDEDLLPLSDAVLEALDELGDPLEWALSGGEDYE-LVFTVPEENREALLDALRSLG--VTIIGRVT  292 (317)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHCCCCCEE-EEEEECCHHHHHHHHHHHHCC--CEEEEEEE
T ss_conf             981999843378867789877544778999863687448-999837024799999987549--66999996


No 45 
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.94  E-value=9.3e-26  Score=195.54  Aligned_cols=285  Identities=18%  Similarity=0.272  Sum_probs=214.2

Q ss_pred             CCCCCEEEEEE--CCCEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEE-EEEECCC----CCCCCCCHH
Q ss_conf             33477368983--6983999995178877-76588887210558102257677874368-7750457----875686388
Q gi|254780970|r   70 GPGENAGVVDI--GGGDCVVFKMESHNHP-SYIEPYQGAATGVGGILRDIFTMGARPVA-AMNSLRF----GAIHHPKTK  141 (737)
Q Consensus        70 ~~~~~a~vi~~--~~~~~~~~k~EtHNhP-s~i~P~~GAaTg~gG~iRDi~~~Ga~p~a-~~~~l~~----g~~~~p~~~  141 (737)
                      -|.-|++|+..  +.....++.+- +|-| +.++||.||.--|+-.+|++.+.|...+. +--+.+|    |+|..   .
T Consensus       674 ~PvaD~aV~~~~~~~~~G~Ama~G-e~P~~a~~dP~agar~AVaEAltNLvaa~i~~l~~i~LSaNWM~a~g~pgE---~  749 (1294)
T PRK05297        674 VPVADCAVTAASYDGYAGEAMSMG-ERTPVALLDAAASARMAVGEALTNIAAAPIGDLKRIKLSANWMAAAGHPGE---D  749 (1294)
T ss_pred             CCCCCCEEEEECCCCCCEEEEEEC-CCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEHHHCCCCCCCCH---H
T ss_conf             576772278513789726999834-788205039889999999999998663456667663744100445799853---6


Q ss_pred             HHHHHHHHHHH-HHHHHCCCCCCCCEEEEE--CCCC---------CCCCCCEEEECCC-CHHHHHHCCCCCCCCEEEEEC
Q ss_conf             89988874588-665430872113203552--1567---------6642211221121-135543112256897799965
Q gi|254780970|r  142 HLLSGVVAGIA-GYSNSFGVPTVGGEVEFL--PCYN---------NNIIVNTFAAGIA-KTNAIFSSKARGIGLPLVYLG  208 (737)
Q Consensus       142 ~~~~~~~~G~~-~ygN~~G~P~v~G~~~~~--~~y~---------~~~~v~~~~~Gi~-~~~~~~~~~~~~~Gd~ii~~G  208 (737)
                      .-+-++++.++ ++|-++|+|+++|..+..  ..|+         -++.+.+.+.|.+ +.++.++..-+++|+.|+++.
T Consensus       750 a~Ly~av~Ai~~e~c~~Lgi~ip~GKDSlSm~~~~~e~~~~~~v~~P~TLVisa~a~v~Dv~~~vTPelK~~gs~L~lId  829 (1294)
T PRK05297        750 AGLYDAVKAVGMELCPALGITIPVGKDSLSMKTKWQEGGEDKEVTSPLSLIISAFAPVEDVRKTLTPQLRTDDTVLLLID  829 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEECCCCCEEEEEEEEECCCCCCCCCCEECCCCEEEEEE
T ss_conf             89999999999988998398634576666755265218975243378877999999714711032644315998799997


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEE
Q ss_conf             76564441046666777286533344433267989998889998740113830110347752011122332014775289
Q gi|254780970|r  209 AKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGIT  288 (737)
Q Consensus       209 ~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~  288 (737)
                      -..++..|||++++. .++. .....|.  +.||..-|++.+++.+++.+++|.++||++.|||..++.|||..+++|++
T Consensus       830 l~~~~~~LGGS~laq-v~~~-~g~~~Pd--vd~~~~lk~~f~~iq~Li~~glI~S~HDvSDGGL~~alaEMaFag~~G~~  905 (1294)
T PRK05297        830 LGRGKNRLGGSALAQ-VYNQ-LGDEAPD--VDDPEDLKGFFNAIQALVAEGLLLAYHDRSDGGLFATLAEMAFAGHCGLD  905 (1294)
T ss_pred             CCCCCCCCHHHHHHH-HHCC-CCCCCCC--CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf             689967521449999-8565-6798969--77899999999999999977987898317778099999999846785148


Q ss_pred             EEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCE--EECCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             9620220466789998986178885089999546758899988870971--31122121044310002586443443210
Q gi|254780970|r  289 LDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLH--FSIIGITTNDKLFRVIHRGEEVANLPIKA  366 (737)
Q Consensus       289 i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~--~~~iG~vt~~~~~~v~~~g~~v~dlp~~~  366 (737)
                      |+|+...     -++.+.++||.-. .++.|++++++.+.+++++.++.  +.+||+++++.++.+.++++.+.+.++..
T Consensus       906 I~l~~~~-----~d~~~~LFsEe~G-~Viqv~~~~~~~V~~~l~~~gl~~~~~~IG~~~~~~~i~I~~~~~~i~~~~~~~  979 (1294)
T PRK05297        906 IDLDALG-----DDLLAALFNEELG-AVIQVRAADRDAVEAILAEAGLSDCSHVIGKPNAGDRIEITRNGKTVFSESRTE  979 (1294)
T ss_pred             EECCCCC-----HHHHHHHHCCCCE-EEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCEEEEHHHHHH
T ss_conf             9667652-----3578887451753-899971342899999998759852048975376787289998999873623999


Q ss_pred             CC
Q ss_conf             14
Q gi|254780970|r  367 LS  368 (737)
Q Consensus       367 L~  368 (737)
                      |.
T Consensus       980 L~  981 (1294)
T PRK05297        980 LR  981 (1294)
T ss_pred             HH
T ss_conf             99


No 46 
>pfam02769 AIRS_C AIR synthase related protein, C-terminal domain. This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The function of the C-terminal domain of AIR synthase is unclear, but the cleft formed between N and C domains is postulated as a sulphate binding site.
Probab=99.93  E-value=2.5e-25  Score=192.62  Aligned_cols=149  Identities=31%  Similarity=0.456  Sum_probs=136.1

Q ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHH
Q ss_conf             68977999657656444104666677728653334443326798999888999874011383011034775201112233
Q gi|254780970|r  199 GIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIE  278 (737)
Q Consensus       199 ~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~E  278 (737)
                      ++||.||++|.    +|+||+++++.......   ...+|++|+++++++++.++++...++|++|||+++|||++++.|
T Consensus         1 k~GD~ii~~g~----~g~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~i~a~~Dis~GGL~~~l~e   73 (150)
T pfam02769         1 KPGDVLILLGS----SGLGGSGLSLVRKGLEE---DGAVPLGDPLLEPTLIYVVLLLAALGLVKAAHDITGGGLAGALAE   73 (150)
T ss_pred             CCCCEEEEECC----CCHHHHHHHHHHHHHCC---CCCCCCCCHHHCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf             99989999899----77289999999731100---599842483206268999999886699679985599739999987


Q ss_pred             HHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCCCCCC
Q ss_conf             2014775289962022046678999898617888508999954675889998887097131122121044310002
Q gi|254780970|r  279 MGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIH  354 (737)
Q Consensus       279 ma~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~  354 (737)
                      |+.++++|++|+++++|..+..++++|.|++|+|+|++++|+|++.+++.++++++++++.+||+||+++.+.+..
T Consensus        74 ~~~~~~~g~~i~~~~~~~~~~~~~~~e~l~~e~~G~~~v~v~~~~~~~v~~~~~~~~~~~~~IG~v~~~~~~~~~~  149 (150)
T pfam02769        74 MAPASGVGAEIDLDKVPIFDELLLPLEMLFSENQGRGLVVVVPEEAEAVLAILEEEGLPAAVIGEVTAGGGLELVV  149 (150)
T ss_pred             HHHCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEE
T ss_conf             6332561689756778603555654551232478638999868899999999998798949999999089799997


No 47 
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.93  E-value=9.2e-25  Score=188.72  Aligned_cols=264  Identities=23%  Similarity=0.301  Sum_probs=184.7

Q ss_pred             CCCCCCCCCCCCEEEECCCCCCEEEEECCCC---CCCHHCCCH-HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             1100001357631420377762279730453---210000100-113567897776410278510223221024566686
Q gi|254780970|r  427 SNSIQLPGGDAGVIRVEGHETKALAFSSDVT---PRYVKADPF-EGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKE  502 (737)
Q Consensus       427 g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~~---p~~~~~dP~-~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~  502 (737)
                      +..-..-+.|++.+.+...   -+|+|+|..   |.+.   |. ..+++||+-+++|++.+||+|.+++..++.+---.-
T Consensus        31 ~~v~~~~g~D~~~i~l~~~---~la~tTD~~~i~P~ff---~~~diG~lAV~gt~NDlav~GA~P~~l~~~lil~eg~~~  104 (339)
T COG0309          31 VNVGLANGEDAAIIDLGDG---VLAFTTDPFVIDPLFF---PGGDIGKLAVHGTANDVAVSGAKPRYLSVGLILPEGLPI  104 (339)
T ss_pred             CCCCCCCCCCEEEEECCCC---EEEEEECCEEECCCCC---CCCCEEEEEEEEEHHHHHHCCCCCEEEEEEEECCCCCCH
T ss_conf             6548655664113403784---6999818807546645---788628999998622544058986002677735899987


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCC
Q ss_conf             21346999999998522102886654432001123686667631112222333520233102143898075137766554
Q gi|254780970|r  503 EIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHL  582 (737)
Q Consensus       503 e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~L  582 (737)
                         -.|.+.++.|.+.|+++|++|++|+.--|..+   +.+.-...+++|.+.. ...+++...++||.|++.|..+.| 
T Consensus       105 ---e~l~~i~~si~e~a~~~Gv~IvtGdTkV~~~~---~~~~vi~tT~iG~~~~-~~~v~~~~~~~GD~vI~tg~~g~h-  176 (339)
T COG0309         105 ---EDLERILKSIDEEAEEAGVSIVTGDTKVVPGG---KDPIVINTTGIGIIDK-EILVSPSGARPGDAVIVTGTIGIH-  176 (339)
T ss_pred             ---HHHHHHHHHHHHHHHHCCCEEECCCCEEECCC---CCCCEEEEEEEEEECC-CCCCCCCCCCCCCEEEECCCHHHH-
T ss_conf             ---89999999999999983974982676661599---8772898646775137-760145789988889981881688-


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             32678888611678999647989999999999999995---980699464865799999999845897089980566689
Q gi|254780970|r  583 DCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINA---KKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEK  659 (737)
Q Consensus       583 ggS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~~---g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~~  659 (737)
                      |.|+++..+........ ..|.....+.+.........   -.|+|+||.++|||+.+|.|||.+|++|+.|+-+..+-.
T Consensus       177 ga~ila~~~~~~l~~~l-~sD~~~~~~~~~~~l~~~~~~~~~~vtAMhDaTrGGla~aLnEmA~aSgvgi~I~ee~Ipv~  255 (339)
T COG0309         177 GASILAHRFGEELETEL-GSDCAPLAKLVKALLSVVGEALAAAVTAMHDATRGGLAGALNEMAEASGVGISIEEEKIPVR  255 (339)
T ss_pred             HHHHHHHHCCHHHCCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             99999875202203323-56678889999988620057766567650387536788999999997498499962466664


Q ss_pred             CH---HHHHHCC------CCCCEEEEECHHHHHHHHHHHHHCC-CCEEEEEEECCC
Q ss_conf             87---8887298------8321899996880998999998579-849998998798
Q gi|254780970|r  660 DP---KPFLFGE------DQGRYVVCISPENQDLVMSEANNKN-IPLRYLGKVSGS  705 (737)
Q Consensus       660 d~---~~~LFsE------s~Gr~ii~V~~~~~~~~~~~~~~~g-i~~~~IG~Vt~~  705 (737)
                      +.   .+.+|+-      +.|.+|+.|++++.+++++++++++ +++..||+|+.+
T Consensus       256 ~eVr~vce~lGiDPl~~anEG~lv~~V~~~~a~~~l~~L~~~~~~~A~iIGeV~~~  311 (339)
T COG0309         256 EEVRGVCELLGLDPLELANEGKLVIAVPPEHAEEVLEALRSHGLKDAAIIGEVVEE  311 (339)
T ss_pred             HHHHHHHHHHCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf             89999999839887887258609999788999999999986499542268998326


No 48 
>TIGR01379 thiL thiamine-monophosphate kinase; InterPro: IPR006283   This family represents thiamine-monophosphate kinase, an enzyme that converts thiamine monophosphate into thiamine pyrophosphate (TPP, coenzyme B1), an enzyme cofactor. Thiamine monophosphate may be derived from de novo synthesis or from unphosphorylated thiamine, known as vitamin B1. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step. ; GO: 0009030 thiamin phosphate kinase activity, 0009228 thiamin biosynthetic process.
Probab=99.92  E-value=3.3e-24  Score=184.91  Aligned_cols=282  Identities=24%  Similarity=0.303  Sum_probs=201.1

Q ss_pred             HHCCCCEEECCCCCEEEEEECCCEEEEEE----ECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             20697489933477368983698399999----5178877765-888872105581022576778743687750457875
Q gi|254780970|r   61 PTTGKHVIQGPGENAGVVDIGGGDCVVFK----MESHNHPSYI-EPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAI  135 (737)
Q Consensus        61 ~~~~~~vi~~~~~~a~vi~~~~~~~~~~k----~EtHNhPs~i-~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~  135 (737)
                      ....+.|+.+.|||||+|+..++.-++++    +|.=-||..+ .|+.=+=-=+.=.+=|+.+|||+|.+.+-++..+. 
T Consensus        15 ~~~~~~~~~~~GDDAA~~~~~~~~~lv~t~D~Lve~~HF~~~~~~Pe~~G~K~~avNlSDlAAmGA~P~~~~~s~~~P~-   93 (336)
T TIGR01379        15 LVKDDSVALGIGDDAALVSPPEGEDLVLTTDTLVEGVHFPPDTTPPEDLGWKAVAVNLSDLAAMGATPKWFLLSLGLPS-   93 (336)
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCC-
T ss_conf             1478763324764123115799963899870232475788677898999999999749999730570232231001688-


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf             68638889988874588665430872113203552156766422112211211355431122568977999657656444
Q gi|254780970|r  136 HHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDG  215 (737)
Q Consensus       136 ~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dG  215 (737)
                       +.+..| ++....|+..-++++|++.|||+|..-      ..+.+.++|.++.+..+....++|||.|.+.|    ..|
T Consensus        94 -~~~~~~-~~~f~~G~~~~~~~Y~~~LiGGDT~~~------~~~~~T~iG~~~~~~~~~RsgAk~GD~v~VTG----~lG  161 (336)
T TIGR01379        94 -DLDEAW-LEAFYDGLFELAKQYGVDLIGGDTVKS------LVVTVTAIGEAPKGRALLRSGAKPGDLVFVTG----TLG  161 (336)
T ss_pred             -CCCHHH-HHHHHHHHHHHHHHCCCEEEECCCCCE------EEEEEEEEEEECCCCEEECCCCCCCCEEEEEC----CCC
T ss_conf             -988899-999999999987553987872440021------31434578975689733236787776789958----832


Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCCC-CCHHH-HHHH-----HHHHHHHCCCCCCH--HCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             104666677728653334443326-79899-9888-----99987401138301--103477520111223320147752
Q gi|254780970|r  216 IGGASMASEEFGENIAKKRPTVQV-GDPFT-GKCL-----LEACLELMNTDAVI--AIQDMGAAGLTCSAIEMGNQGNLG  286 (737)
Q Consensus       216 i~Ga~~sS~~~~~~~~~~~~~VQ~-gdp~~-ek~~-----~~~~~~~~~~~~i~--~~~D~gaGGl~~a~~Ema~~~~~G  286 (737)
                      -..+...--..++....+ ..+.. .+.++ ||.+     ++.-..+......+  ++.|+|+| |+..+.+++.+|++|
T Consensus       162 ~saaGL~ll~~G~~~~~~-~~~~~~~~~~~~~r~l~P~PR~~~G~~l~~~~~a~W~Aa~D~SDG-L~~dL~hIa~AS~vg  239 (336)
T TIGR01379       162 DSAAGLELLLKGKEEGKK-KEVDEEDDEALLQRHLRPEPRVEEGLALARASLANWVAAIDVSDG-LASDLGHIAEASGVG  239 (336)
T ss_pred             HHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHEHHHHCCCHH-HHHHHHHHHHHCCCE
T ss_conf             689999999734664025-677851479999986389982899999974543323121220477-999999999728962


Q ss_pred             EEEEEHHHCCCC----------CCCCHHHHHHC--C-CCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCC--C
Q ss_conf             899620220466----------78999898617--8-8850899995467588999888709713112212104431--0
Q gi|254780970|r  287 ITLDLDKVPTCE----------EGMTAYEMMLS--E-SQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLF--R  351 (737)
Q Consensus       287 ~~i~l~~vp~~~----------~~l~~~ei~~s--E-sQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~--~  351 (737)
                      ++|+++++|+.+          ...+|+|..++  | +|  .+++++|++.+.++.++++.++++++||+||+....  .
T Consensus       240 ~~i~~~~LP~~~~~~~~~~~~~~~~~~~~~aL~gGEDyE--LvfT~~~~~~~~l~~~~~~~~v~~~~IG~v~~g~~~~~~  317 (336)
T TIGR01379       240 IRIDLDKLPLSSELKEIADTEELGKQPLEWALSGGEDYE--LVFTVPPERREALLDALKALGVPLTRIGRVTEGEGGSVV  317 (336)
T ss_pred             EEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCEE--EEEECCHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEE
T ss_conf             998526478708999886306310027999987288332--455158667889999997558766899999864870599


Q ss_pred             CCCCCCCC
Q ss_conf             00258644
Q gi|254780970|r  352 VIHRGEEV  359 (737)
Q Consensus       352 v~~~g~~v  359 (737)
                      +..+|+++
T Consensus       318 ~~~~g~~~  325 (336)
T TIGR01379       318 LLADGETV  325 (336)
T ss_pred             EEECCCEE
T ss_conf             98668557


No 49 
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=99.86  E-value=2e-20  Score=159.01  Aligned_cols=271  Identities=22%  Similarity=0.292  Sum_probs=187.0

Q ss_pred             CCCEEECCCCCEEEEEECCCEEEEEE----ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CCCCC
Q ss_conf             97489933477368983698399999----51788777658888721055810225767787436877504578-75686
Q gi|254780970|r   64 GKHVIQGPGENAGVVDIGGGDCVVFK----MESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFG-AIHHP  138 (737)
Q Consensus        64 ~~~vi~~~~~~a~vi~~~~~~~~~~k----~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g-~~~~p  138 (737)
                      ...+..+.||||++++..++..++++    +|.--+|....|+.=+=--+.-.+-|+.+|||+|.+.+-+|..+ +.+  
T Consensus        18 ~~~~~~~~GDDaA~v~~~~~~~lvvttD~lv~~~hF~~~~~p~d~G~Ka~a~NlSDlAAMGa~P~~~~lsl~lP~~~d--   95 (317)
T COG0611          18 REDVVLGIGDDAALVDAPEGQRLVVTTDMLVEGTHFPPDMTPEDLGWKALAVNLSDLAAMGARPKAFLLSLGLPPDLD--   95 (317)
T ss_pred             CCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCC--
T ss_conf             655332577764798158886489996121253556999999998789999888899974887653426552899999--


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHH
Q ss_conf             38889988874588665430872113203552156766422112211211355431122568977999657656444104
Q gi|254780970|r  139 KTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGG  218 (737)
Q Consensus       139 ~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~G  218 (737)
                        ...++....|+.+..+.+|++.|||++-.     ++..+.+.++|.++++.......++|||.|++.|    ..|-..
T Consensus        96 --~~~~~~~~~Gi~e~~~~y~~~lIGGDt~~-----~~l~is~t~iG~~~~~~~l~R~gAkpGD~v~vtG----~lG~sa  164 (317)
T COG0611          96 --EEWLEALADGIFEAAKKYGVKLIGGDTNR-----GPLSISVTAIGVLPKGRALLRSGAKPGDLVAVTG----TLGRSA  164 (317)
T ss_pred             --HHHHHHHHHHHHHHHHHCCCEEECCCCCC-----CCEEEEEEEEEECCCCCCEECCCCCCCCEEEECC----CCCHHH
T ss_conf             --99999999999999998298086433678-----7358999999961787410046999999999918----876648


Q ss_pred             HHHHHHHHCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHC
Q ss_conf             666677728653334---44332679899988899987401138301103477520111223320147752899620220
Q gi|254780970|r  219 ASMASEEFGENIAKK---RPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVP  295 (737)
Q Consensus       219 a~~sS~~~~~~~~~~---~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp  295 (737)
                      +.+.........+..   ....+++-|.     ++.-+.+..  ...++.|+++| |+..+.+++.+|++|++|+.+++|
T Consensus       165 agl~ll~~~~~~~~~~~l~~r~~~P~Pr-----v~~g~~l~~--~a~aa~DiSDG-L~~dL~~i~~aS~vg~~I~~~~lp  236 (317)
T COG0611         165 AGLELLLNVLGPEDEEELIERHLRPTPR-----VELGLALAK--LASAAMDISDG-LAADLGHIARASGVGIVIDEDLLP  236 (317)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCCCCC-----HHHHHHHHH--HHHHHEECCHH-HHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             9999996146753038999984499997-----567899998--87775123065-999999999982981999843378


Q ss_pred             CCCC-------CCCHHHHHHCCCCC--EEEEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCC
Q ss_conf             4667-------89998986178885--089999546758899988870971311221210443100025864
Q gi|254780970|r  296 TCEE-------GMTAYEMMLSESQE--RMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEE  358 (737)
Q Consensus       296 ~~~~-------~l~~~ei~~sEsQe--R~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~  358 (737)
                      +.+.       ..+|+++.++ +-|  -.++++++++.+.++..|++.+  +++||++++.....+..+|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~aL~-gGEDyEL~ft~p~~~~~~~~~~~~~~~--~~~IG~v~~~~g~~~~~dgk~  305 (317)
T COG0611         237 LSDAVLEALDELGDPLEWALS-GGEDYELVFTVPEENREALLDALRSLG--VTIIGRVTEGEGVVVLVDGKE  305 (317)
T ss_pred             CCHHHHHHHHCCCCHHHHHHC-CCCCEEEEEEECCHHHHHHHHHHHHCC--CEEEEEEEECCCEEEEECCCE
T ss_conf             867789877544778999863-687448999837024799999987549--669999962587389841856


No 50 
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=99.86  E-value=4.3e-20  Score=156.68  Aligned_cols=222  Identities=22%  Similarity=0.316  Sum_probs=104.6

Q ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCC-CCCCEEEECCCCHH
Q ss_conf             225767787436877504578756863888998887458866543087211320355215-6766-42211221121135
Q gi|254780970|r  113 LRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPC-YNNN-IIVNTFAAGIAKTN  190 (737)
Q Consensus       113 iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~-y~~~-~~v~~~~~Gi~~~~  190 (737)
                      ++|++++||+|++.+|.+-.+.++.    ..+.++++|++..|.+.|+|.+||+|...|+ |..+ .-+.++|+|+++++
T Consensus        54 VNDi~~~GA~Pl~flDY~a~~~l~~----~~~~~iv~Gi~~~c~~~~~~liGGETAemPg~y~~~~~DlaG~~vGiv~k~  129 (297)
T cd02196          54 VNDILCQGAEPLFFLDYIATGKLDP----EVAAEIVKGIAEGCRQAGCALLGGETAEMPGVYAEGEYDLAGFAVGVVEKD  129 (297)
T ss_pred             CCCHHCCCCEEEEEEEEEECCCCCH----HHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEEEEEEEEEECH
T ss_conf             4201115866135667740278899----999999999999999839967754520144656899776756899999710


Q ss_pred             HHHHCCCCCCCCEEEEECCCCCCCCCHHHHHH--HHHHCCCCC-CCCCC----CCCCCHHHH--HHHHHHHHHHCCCCCC
Q ss_conf             54311225689779996576564441046666--777286533-34443----326798999--8889998740113830
Q gi|254780970|r  191 AIFSSKARGIGLPLVYLGAKTGRDGIGGASMA--SEEFGENIA-KKRPT----VQVGDPFTG--KCLLEACLELMNTDAV  261 (737)
Q Consensus       191 ~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~s--S~~~~~~~~-~~~~~----VQ~gdp~~e--k~~~~~~~~~~~~~~i  261 (737)
                      +++.....++||.||-+.    ..|+|..-||  .+.+.+... .+.+.    -..++..++  |.-.+.++++.++..|
T Consensus       130 ~ii~~~~i~~GDviIgl~----SsG~HsNGySLiRkil~~~~~~~~~~~~~~~~tl~~~LL~PtriY~~~v~~l~~~~~i  205 (297)
T cd02196         130 KIIDGSKIKPGDVLIGLP----SSGLHSNGYSLVRKILFEEGLDYDDPEPGLGKTLGEELLTPTRIYVKPILPLLEKVLV  205 (297)
T ss_pred             HCCCCCCCCCCCEEEEEC----CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             135602377898899956----8876543288999998744665446685455609999710478888999999740771


Q ss_pred             HHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCC--------CCCCHHHHHH--CCCCCEEEEEEECCCHHHHHHHH
Q ss_conf             1103477520111223320147752899620220466--------7899989861--78885089999546758899988
Q gi|254780970|r  262 IAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE--------EGMTAYEMML--SESQERMLMILNPEKQHKAQEIL  331 (737)
Q Consensus       262 ~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~--------~~l~~~ei~~--sEsQeR~~~~v~~~~~~~~~~i~  331 (737)
                      +++.+++.|||...+..+.. .+++++||+++.|..+        -++++.|.+=  |-. =.|+++|+|++.+++.+++
T Consensus       206 ~g~aHITGGGl~~Nl~Rvlp-~~l~a~Id~~~~~~p~iF~~i~~~g~i~~~Em~~tFNmG-iGmvliv~~~~~~~v~~~l  283 (297)
T cd02196         206 KGMAHITGGGLPENLPRVLP-EGLGAVIDLGSWEIPPIFKWIQKAGNVSEEEMYRTFNMG-IGMVLIVSEEDADEVLEIL  283 (297)
T ss_pred             CEEEECCCCCHHHCHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHCCCC-CEEEEEECHHHHHHHHHHH
T ss_conf             13762378514313133256-880599855667998899999985898999999754787-2299998389999999999


Q ss_pred             HHHCCEEECCCCE
Q ss_conf             8709713112212
Q gi|254780970|r  332 NKWGLHFSIIGIT  344 (737)
Q Consensus       332 ~~~~~~~~~iG~v  344 (737)
                      ++++.++.+||+|
T Consensus       284 ~~~g~~a~vIG~V  296 (297)
T cd02196         284 EKLGEKAYVIGEV  296 (297)
T ss_pred             HHCCCCCEEEEEE
T ss_conf             9769981898787


No 51 
>pfam02769 AIRS_C AIR synthase related protein, C-terminal domain. This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The function of the C-terminal domain of AIR synthase is unclear, but the cleft formed between N and C domains is postulated as a sulphate binding site.
Probab=99.85  E-value=2.7e-20  Score=158.15  Aligned_cols=138  Identities=31%  Similarity=0.420  Sum_probs=119.8

Q ss_pred             CCCCCEEECCCCCCCCCHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             38980751377665543267888861167-89996479899999999999999959806994648657999999998458
Q gi|254780970|r  567 HEGDLILMIGNDGCHLDCSMYSLECASSN-IGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISS  645 (737)
Q Consensus       567 ~~Gd~I~liG~~~~~LggS~~~~~~~~~~-~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as  645 (737)
                      ++||.|+++|.  ..++|+.|+....... .+.++..|+..++++++.++.++..++|+|+||||+|||+.+|.|||+++
T Consensus         1 k~GD~ii~~g~--~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~a~~Dis~GGL~~~l~e~~~~~   78 (150)
T pfam02769         1 KPGDVLILLGS--SGLGGSGLSLVRKGLEEDGAVPLGDPLLEPTLIYVVLLLAALGLVKAAHDITGGGLAGALAEMAPAS   78 (150)
T ss_pred             CCCCEEEEECC--CCHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf             99989999899--7728999999973110059984248320626899999988669967998559973999998763325


Q ss_pred             CCCEEEEECCCCC----CCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCE
Q ss_conf             9708998056668----987888729883218999968809989999985798499989987986
Q gi|254780970|r  646 AKGMDIILPIEIE----KDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGST  706 (737)
Q Consensus       646 ~~G~~I~L~~~~~----~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~~  706 (737)
                      ++|++|+++..+.    .++.+.||+|++|++++.|++++.+++++.+++.++++++||+|+++.
T Consensus        79 ~~g~~i~~~~~~~~~~~~~~~e~l~~e~~G~~~v~v~~~~~~~v~~~~~~~~~~~~~IG~v~~~~  143 (150)
T pfam02769        79 GVGAEIDLDKVPIFDELLLPLEMLFSENQGRGLVVVVPEEAEAVLAILEEEGLPAAVIGEVTAGG  143 (150)
T ss_pred             CEEEEEECCCCCCCCCCCCHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf             61689756778603555654551232478638999868899999999998798949999999089


No 52 
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=99.83  E-value=1e-18  Score=147.26  Aligned_cols=257  Identities=20%  Similarity=0.226  Sum_probs=177.9

Q ss_pred             CCCCCEEEECC--CCCCEEEEECCCCCCCHHCC----C-HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf             35763142037--77622797304532100001----0-01135678977764102785102232210245666862134
Q gi|254780970|r  434 GGDAGVIRVEG--HETKALAFSSDVTPRYVKAD----P-FEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMG  506 (737)
Q Consensus       434 g~DaaVv~~~~--~~~~gia~s~g~~p~~~~~d----P-~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~  506 (737)
                      |+=+++..+..  ..+..+++++|.-.....+-    - ..-++-.|+-++.||+|+||+|++++|.+-.+.. +++   
T Consensus         4 G~F~g~~~~~~~~~~~p~lv~~tDGVGTK~~la~~~~~~~~iG~DlVam~VNDi~~~GA~Pl~flDY~a~~~l-~~~---   79 (297)
T cd02196           4 GGFAGLFDLGLGGYKDPVLVSGTDGVGTKLKLAQEMGKHDTIGIDLVAMCVNDILCQGAEPLFFLDYIATGKL-DPE---   79 (297)
T ss_pred             CCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHCCCCEEEEEEEEEECCCC-CHH---
T ss_conf             6544645347568999679981788638999999957754530334551142011158661356677402788-999---


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCC----CCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCC
Q ss_conf             69999999985221028866544320011236866-6763----111222233352023310214389807513776655
Q gi|254780970|r  507 QFVHSVKGIREACQILDFPIVSGNVSFYNETNGQS-IFPT----PTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCH  581 (737)
Q Consensus       507 ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~-I~pT----pvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~  581 (737)
                      .+.+.++|+.++|++.+++++||      ||...+ +.+.    +.-+++|.++ .++.++....++||.|+-+.+++.|
T Consensus        80 ~~~~iv~Gi~~~c~~~~~~liGG------ETAemPg~y~~~~~DlaG~~vGiv~-k~~ii~~~~i~~GDviIgl~SsG~H  152 (297)
T cd02196          80 VAAEIVKGIAEGCRQAGCALLGG------ETAEMPGVYAEGEYDLAGFAVGVVE-KDKIIDGSKIKPGDVLIGLPSSGLH  152 (297)
T ss_pred             HHHHHHHHHHHHHHHCCCCEECC------CCCCCCCCCCCCCEEEEEEEEEEEE-CHHCCCCCCCCCCCEEEEECCCCCC
T ss_conf             99999999999999839967754------5201446568997767568999997-1013560237789889995688765


Q ss_pred             CCHHHHHH-HHHCCC--CCC-CCCCCH-------HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEE
Q ss_conf             43267888-861167--899-964798-------9999999999999995980699464865799999999845897089
Q gi|254780970|r  582 LDCSMYSL-ECASSN--IGP-PPKVDC-------HLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMD  650 (737)
Q Consensus       582 LggS~~~~-~~~~~~--~g~-~p~~d~-------~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~  650 (737)
                      -.|-.+.+ .+....  ... .|..+.       +.-+-....++++++...|+++.+||.|||...|.++ +.++++++
T Consensus       153 sNGySLiRkil~~~~~~~~~~~~~~~~tl~~~LL~PtriY~~~v~~l~~~~~i~g~aHITGGGl~~Nl~Rv-lp~~l~a~  231 (297)
T cd02196         153 SNGYSLVRKILFEEGLDYDDPEPGLGKTLGEELLTPTRIYVKPILPLLEKVLVKGMAHITGGGLPENLPRV-LPEGLGAV  231 (297)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHCHHHH-CCCCCEEE
T ss_conf             43288999998744665446685455609999710478888999999740771137623785143131332-56880599


Q ss_pred             EEECCCCCCCHHHH--------------HHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             98056668987888--------------729883218999968809989999985798499989987
Q gi|254780970|r  651 IILPIEIEKDPKPF--------------LFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVS  703 (737)
Q Consensus       651 I~L~~~~~~d~~~~--------------LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt  703 (737)
                      |+.+..+......+              -|+...| |++.|++++.+++++.+++++.++++||+|.
T Consensus       232 Id~~~~~~p~iF~~i~~~g~i~~~Em~~tFNmGiG-mvliv~~~~~~~v~~~l~~~g~~a~vIG~Vv  297 (297)
T cd02196         232 IDLGSWEIPPIFKWIQKAGNVSEEEMYRTFNMGIG-MVLIVSEEDADEVLEILEKLGEKAYVIGEVV  297 (297)
T ss_pred             EECCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCE-EEEEECHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             85566799889999998589899999975478722-9999838999999999997699818987879


No 53 
>TIGR00476 selD selenide, water dikinase; InterPro: IPR004536 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide, water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence scoring above the trusted cut-off but not aligning to the beginning of the HMM is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence.; GO: 0004756 selenide water dikinase activity, 0005524 ATP binding.
Probab=99.82  E-value=4.8e-19  Score=149.53  Aligned_cols=252  Identities=21%  Similarity=0.270  Sum_probs=173.7

Q ss_pred             CCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC--CHHHHHHHH
Q ss_conf             357631420377762279730453210000100113567897776410278510223221024566686--213469999
Q gi|254780970|r  434 GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKE--EIMGQFVHS  511 (737)
Q Consensus       434 g~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~--e~~~ql~~a  511 (737)
                      .+||+|....  ++.-++-|+|...+.+. |||..||.|-+.|++||+|||..|+....-++|.+-.=+  |+--=+.+.
T Consensus        57 mDdA~v~~~~--nG~~~v~T~D~~~PiVd-dPY~~G~IAaaN~~SDiYAMG~~~i~~~l~~~~~~~kL~drer~~v~Rev  133 (372)
T TIGR00476        57 MDDAAVYERH--NGLSLVKTVDVITPIVD-DPYLFGRIAAANALSDIYAMGGLPIVALLILVGVSNKLSDRERIEVVREV  133 (372)
T ss_pred             CCCCEEEECC--CCEEEEEEEEEEEEEEC-CHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCCCHHHHH
T ss_conf             3431135317--98899996338983256-83554489987567777743773210143330356668754442010687


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHH
Q ss_conf             99998522102886654432001123686667631112--2223335202331021438980751377665543267888
Q gi|254780970|r  512 VKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIA--GVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSL  589 (737)
Q Consensus       512 v~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~--~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS~~~~  589 (737)
                      ++|..|+||+.++.++||+      |-.   .|-|+++  +.|+++. .+.++++.+++||+|+|   |++ ||-...-.
T Consensus       134 ~~G~~d~~reakt~~~GGh------til---~pwp~~Gg~vtgv~~~-~~~~~~~~a~~G~~L~L---TKP-LGtqv~~~  199 (372)
T TIGR00476       134 IKGFKDACREAKTALVGGH------TIL---NPWPVFGGAVTGVCPE-EEVITKSGAQVGDVLIL---TKP-LGTQVLVA  199 (372)
T ss_pred             HHHHHHHHHHCCEEEECCE------EEC---CCCCCCCCEEEEECCC-CCEECCCCCCCCCEEEE---ECC-CHHHHHHH
T ss_conf             7658888876890797362------112---7620005406310278-84752588742416785---175-16899998


Q ss_pred             HHHC----CCC-----CC-CCCCCHHHHHH------HH-------HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             8611----678-----99-96479899999------99-------99999999598069946486579999999984589
Q gi|254780970|r  590 ECAS----SNI-----GP-PPKVDCHLEKN------HG-------FFVLSMINAKKITACHDISTGGLIITLAEMTISSA  646 (737)
Q Consensus       590 ~~~~----~~~-----g~-~p~~d~~~~k~------~~-------~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~  646 (737)
                      ....    ...     +- -++.|+...++      +.       ..-.+++....+.|+.||+..||++|+.|||-.++
T Consensus       200 ~~~~~~~~~~~nkik~~i~~ee~~~~~~~A~e~M~~~Nryalkal~~A~~~~~~~~~~A~TDvTGFGlLGH~~~~ak~~~  279 (372)
T TIGR00476       200 VEKKLDIFKDLNKIKLSILKEERELIINEAIENMARLNRYALKALRKAAELMNSKDAKALTDVTGFGLLGHAQEMAKNSN  279 (372)
T ss_pred             HHHCCCCHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCC
T ss_conf             76311200110414678607527889989999999888999999999887664418715311456545688999874078


Q ss_pred             CCEEEEE---CCCCCC------------------------------CHHHHHHCC--CCCCEEEEECHHHHHHHHH-HHH
Q ss_conf             7089980---566689------------------------------878887298--8321899996880998999-998
Q gi|254780970|r  647 KGMDIIL---PIEIEK------------------------------DPKPFLFGE--DQGRYVVCISPENQDLVMS-EAN  690 (737)
Q Consensus       647 ~G~~I~L---~~~~~~------------------------------d~~~~LFsE--s~Gr~ii~V~~~~~~~~~~-~~~  690 (737)
                      +.++|+.   |.....                              +....||++  ..+.|+++|.++..+.+.+ ...
T Consensus       280 ~~~~~~~e~lP~l~~~~~~~k~~~~~~G~~~g~~~~~~G~L~~~~~~~~~~ll~~~~~S~~y~~~~~~~~~~~v~~G~~~  359 (372)
T TIGR00476       280 VEARIVYEKLPVLKKVEELSKLKGVPLGAIEGLETAGSGLLLSELPREKAALLCDPVKSGGYLFEVQKEVKEKVEKGTAK  359 (372)
T ss_pred             CEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             66999953088735457889863243312135421267422135707898642610105135776668885111010134


Q ss_pred             HCCCCEEEEEEE
Q ss_conf             579849998998
Q gi|254780970|r  691 NKNIPLRYLGKV  702 (737)
Q Consensus       691 ~~gi~~~~IG~V  702 (737)
                      +.+|....|||+
T Consensus       360 ~~~v~~~~IgE~  371 (372)
T TIGR00476       360 EKEVELIEIGEV  371 (372)
T ss_pred             HHHCCEEEEEEE
T ss_conf             330450254310


No 54 
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=99.79  E-value=1.7e-17  Score=138.83  Aligned_cols=265  Identities=20%  Similarity=0.334  Sum_probs=153.8

Q ss_pred             CCCCEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCC---------------------CCCCCCCCCCC
Q ss_conf             697489933477368983698399999517887776588887210558---------------------10225767787
Q gi|254780970|r   63 TGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVG---------------------GILRDIFTMGA  121 (737)
Q Consensus        63 ~~~~vi~~~~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P~~GAaTg~g---------------------G~iRDi~~~Ga  121 (737)
                      ..+.|+.+.|.=||.+++..++         .+|--+.-    .-|||                     =.++|++|+||
T Consensus        30 ~~~~v~~~iGgF~gl~~~~~~~---------~~p~Lv~~----tDGVGTK~~iA~~~~~~~tiG~DlVam~vNDil~~GA   96 (338)
T PRK05385         30 FRPEVLGGLGGFGGLFDLPAGY---------KEPVLVSG----TDGVGTKLKLAIDLGKHDTIGIDLVAMCVNDLLVQGA   96 (338)
T ss_pred             CCCCCCCCCCCCCEEEECCCCC---------CCCEEEEC----CCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCEEECCC
T ss_conf             7977546876620445554468---------99679971----8887189999999576143306789752777666286


Q ss_pred             EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCC-CCCCEEEECCCCHHHHHHCCCCC
Q ss_conf             436877504578756863888998887458866543087211320355215-6766-42211221121135543112256
Q gi|254780970|r  122 RPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPC-YNNN-IIVNTFAAGIAKTNAIFSSKARG  199 (737)
Q Consensus       122 ~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~-y~~~-~~v~~~~~Gi~~~~~~~~~~~~~  199 (737)
                      +|++.+|.+-.|.++..    ...++++|++..|.+.|.+.+||+|.-.|+ |..+ .-.-.+|+|++++++++..+..+
T Consensus        97 ~Pl~flDY~a~~~l~~~----~~~~iv~Gi~~~c~~~~~~LiGGETAemPg~y~~~~~DLaG~~VGivek~~ii~~~~i~  172 (338)
T PRK05385         97 EPLFFLDYIATGKLDPE----VAAEVVKGIAEGCEQAGCALIGGETAEMPGMYHEGDYDLAGFAVGVVEKDEIIDGSKVK  172 (338)
T ss_pred             EEEEEEEEECCCCCCHH----HHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCC
T ss_conf             73234555120788989----99999999999999809804365210133435689773633799998142234566689


Q ss_pred             CCCEEEEECCCCCCCCCHHHHHH--HHHHCCC---CCCCCCCCC--CCCHHHH--HHHHHHHHHHCCCCCCHHCCCCCCC
Q ss_conf             89779996576564441046666--7772865---333444332--6798999--8889998740113830110347752
Q gi|254780970|r  200 IGLPLVYLGAKTGRDGIGGASMA--SEEFGEN---IAKKRPTVQ--VGDPFTG--KCLLEACLELMNTDAVIAIQDMGAA  270 (737)
Q Consensus       200 ~Gd~ii~~G~~tg~dGi~Ga~~s--S~~~~~~---~~~~~~~VQ--~gdp~~e--k~~~~~~~~~~~~~~i~~~~D~gaG  270 (737)
                      +||.||-+-+    .|+|-.-||  -+.+.+.   ..+..+.-+  .++..++  |.-.+.++++.+++.|+++-.++.|
T Consensus       173 ~GDviiGl~S----sG~HsNGySLiRki~~~~~~~~~~~~~~~~~tlge~LL~PTriY~~~i~~l~~~~~Ikg~aHITGG  248 (338)
T PRK05385        173 EGDVLIGLAS----SGLHSNGYSLVRKILEVAGLDLDDTLPELGKTLGEELLEPTRIYVKPVLALLKEGDVKGMAHITGG  248 (338)
T ss_pred             CCCEEEEEEC----CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf             9988999607----986655078999999874998232565346869998635067767999999862781399982588


Q ss_pred             CHHHHHHHHHCCCCCCEEEEEHHHCCC-------CC-CCCHHHHHHCC-CCCEEEEEEECCCHHHHHHHHHHHCCEEECC
Q ss_conf             011122332014775289962022046-------67-89998986178-8850899995467588999888709713112
Q gi|254780970|r  271 GLTCSAIEMGNQGNLGITLDLDKVPTC-------EE-GMTAYEMMLSE-SQERMLMILNPEKQHKAQEILNKWGLHFSII  341 (737)
Q Consensus       271 Gl~~a~~Ema~~~~~G~~i~l~~vp~~-------~~-~l~~~ei~~sE-sQeR~~~~v~~~~~~~~~~i~~~~~~~~~~i  341 (737)
                      ||.-.++-+.. .+++++|+++..|.-       +. +++..|.+=-= --=.|+++|+|++.+++.+++++.+.++.+|
T Consensus       249 Gl~~Nl~Rilp-~~l~a~Id~~~w~~P~iF~~i~~~G~i~~~EM~rtFNmGIGmvliV~~~~~~~v~~~l~~~g~~a~~I  327 (338)
T PRK05385        249 GFIENLPRVLP-EGLGAEIDKGSWPVPPIFKWLQKAGNVEEEEMYRTFNMGIGMVLIVPEEDADAALALLEARGEDAWVI  327 (338)
T ss_pred             CCCCCCCCCCC-CCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCEEE
T ss_conf             50036541157-88069996677999889999998489899999874358222699983899999999999769984898


Q ss_pred             CCEEECCC
Q ss_conf             21210443
Q gi|254780970|r  342 GITTNDKL  349 (737)
Q Consensus       342 G~vt~~~~  349 (737)
                      |+|++..+
T Consensus       328 G~V~~g~~  335 (338)
T PRK05385        328 GEVKEGEE  335 (338)
T ss_pred             EEEEECCC
T ss_conf             99997986


No 55 
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase; InterPro: IPR010073   This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I) perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit .; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=99.76  E-value=5.7e-18  Score=142.14  Aligned_cols=385  Identities=17%  Similarity=0.222  Sum_probs=257.1

Q ss_pred             EEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHH-HH-----HCCEEECCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             620220466789998986178885089999546758899988-87-----097131122121044310002586443443
Q gi|254780970|r  290 DLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEIL-NK-----WGLHFSIIGITTNDKLFRVIHRGEEVANLP  363 (737)
Q Consensus       290 ~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~-~~-----~~~~~~~iG~vt~~~~~~v~~~g~~v~dlp  363 (737)
                      .|..|++=+.|=.++|-.=    -+|-|+...+++|-+.+.| ..     .+||..-+.+-..+.--+=.|+++.++|=.
T Consensus       171 ~l~~v~vl~~GR~ALE~AN----~elGLAL~~de~DYl~~~fr~~L~RnP~dVEL~mfAQaNSEHcRHkiFna~~~idG~  246 (1401)
T TIGR01735       171 KLTTVDVLGGGRKALEKAN----QELGLALDEDEIDYLTKRFRQELKRNPSDVELMMFAQANSEHCRHKIFNADWIIDGK  246 (1401)
T ss_pred             CCCCCCHHHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCEEECCC
T ss_conf             7750011244489999998----985304575688999999999837898724688775303101000311253377881


Q ss_pred             -C-CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC--CCCCCCCCE
Q ss_conf             -2-101466501145553156555101234687255889999985073210103565311210001100--001357631
Q gi|254780970|r  364 -I-KALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMIQSNSI--QLPGGDAGV  439 (737)
Q Consensus       364 -~-~~L~~~~P~~~r~~~~~~~~~~~~~~~~~~~~d~~~~l~~vL~~pnV~SK~~i~~qyD~~V~g~tv--~~Pg~DaaV  439 (737)
                       + +-||.    +-    +.. .+...+..+..-.|=..+                       +.|..|  ..|-.+-.+
T Consensus       247 ~q~kSLF~----mI----k~T-~e~~~~~~v~aykDNssv-----------------------I~G~~v~r~rP~~~t~~  294 (1401)
T TIGR01735       247 KQDKSLFQ----MI----KST-HEANPENTVSAYKDNSSV-----------------------IEGHKVGRLRPDPPTRV  294 (1401)
T ss_pred             HHCCHHHH----HH----HHH-HHCCCCCEEEEEECCHHH-----------------------HCCCCEECCCCCCCCCC
T ss_conf             21103789----88----988-733999608988311246-----------------------54742000078887660


Q ss_pred             E-EECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCC--CCCHHHHHHHCCCCC------------C--CCC
Q ss_conf             4-2037776227973045321000010011356789777641027--851022322102456------------6--686
Q gi|254780970|r  440 I-RVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIAT--GAKPLAITDNLNFGN------------P--EKE  502 (737)
Q Consensus       440 v-~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~--Ga~Plait~~lnf~~------------P--~~~  502 (737)
                      - +.......-|.|+..-..+-+.+.||-||...-+.=+||-=|.  |++|.|-+--++++|            |  ..|
T Consensus       295 ~y~~~~~~~~~i~~kvETHNhPTAiaPFpGA~TGaGGeIRDegATGRGa~pkAGl~Gf~VsNL~IPg~~~PWE~~S~~~P  374 (1401)
T TIGR01735       295 EYRQHQEDDVHILMKVETHNHPTAIAPFPGASTGAGGEIRDEGATGRGAKPKAGLTGFCVSNLNIPGLEQPWEDPSFQKP  374 (1401)
T ss_pred             HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf             24443126721899851378886467767888787873643664488771433345610202517788878875421365


Q ss_pred             CHHHH----HHHHHHHHHHHHHHCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             21346----99999999852210288665443-------20011236866676311122223335202331021438980
Q gi|254780970|r  503 EIMGQ----FVHSVKGIREACQILDFPIVSGN-------VSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDL  571 (737)
Q Consensus       503 e~~~q----l~~av~gl~d~c~~lgipivgGk-------vSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~  571 (737)
                      +.++.    +.++=-|-+++-++||=|.+-|=       ++...+-.-.-.+|=...+++|.++.  ..++-+--.+|..
T Consensus       375 ~~~aspLdImieap~G~aafnNeFGrP~L~GYfRtfe~~~~~P~~~~R~y~KPIMlaGGiG~I~~--~hi~K~e~~~G~~  452 (1401)
T TIGR01735       375 ERIASPLDIMIEAPLGAAAFNNEFGRPALLGYFRTFELKVSLPGGEVRGYHKPIMLAGGIGSIDA--EHIQKGEIEVGAL  452 (1401)
T ss_pred             CCCCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHH--HCCCCCCCCCCCE
T ss_conf             22457678764067652432776577302223320333211677554443351244310100012--1210578788868


Q ss_pred             EEECCCCCCC--CCHHHHHH-HHHC-----CCCCCCCCCCHHHHHHHHHHHHHHHHCCC---EEEEEECCCCHHHHHHHH
Q ss_conf             7513776655--43267888-8611-----67899964798999999999999999598---069946486579999999
Q gi|254780970|r  572 ILMIGNDGCH--LDCSMYSL-ECAS-----SNIGPPPKVDCHLEKNHGFFVLSMINAKK---ITACHDISTGGLIITLAE  640 (737)
Q Consensus       572 I~liG~~~~~--LggS~~~~-~~~~-----~~~g~~p~~d~~~~k~~~~~v~~li~~g~---I~S~HDiSdGGL~~aL~E  640 (737)
                      |+.+|.+...  |||..-+- +..+     ...+.+.+-|++.+++.++.|..-++-|.   |.|.||+.-|||--++-|
T Consensus       453 ~i~lGGPam~IGlGGGAASSvm~~G~n~~~LDF~sVQR~nPEMerr~qeVId~C~~lG~~NPI~siHDvGAGGlsNa~pE  532 (1401)
T TIGR01735       453 LIVLGGPAMLIGLGGGAASSVMVSGTNDADLDFASVQRGNPEMERRCQEVIDRCVQLGEKNPIISIHDVGAGGLSNALPE  532 (1401)
T ss_pred             EEEECCCEEECCCCCCCHHCEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHH
T ss_conf             99857862254565410000010578815524333577886887688899999985879868467712575720010010


Q ss_pred             HHHCCCCCEEEEECC----CCCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC-EEEEECC
Q ss_conf             984589708998056----66898788872988321899996880998999998579849998998798-6898074
Q gi|254780970|r  641 MTISSAKGMDIILPI----EIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS-TLSIHNI  712 (737)
Q Consensus       641 Ma~as~~G~~I~L~~----~~~~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~-~l~i~~~  712 (737)
                      +.--++.|+.|+|..    .....|++++.+|+|.|+++.|.+++.+.|..+|+..-+|+.+||++|++ .+++.+.
T Consensus       533 L~~d~~~Ga~i~lr~v~~~d~~lspLEIWcnEsQEryvL~v~~~~l~~f~~iC~RERcPfAvvG~at~~~~l~l~D~  609 (1401)
T TIGR01735       533 LINDGGRGAVIDLRAVPLDDPGLSPLEIWCNESQERYVLLVKAEDLEIFTAICERERCPFAVVGTATGDRRLILVDD  609 (1401)
T ss_pred             HCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEC
T ss_conf             00614478558884652588887767663004555577632720079999885640698378987866824899737


No 56 
>TIGR00878 purM phosphoribosylformylglycinamidine cyclo-ligase; InterPro: IPR004733   The purine biosynthetic pathway in procaryotes enlists eleven enzymes, six of which use ATP. Enzymes 5 and 6 of this pathway, formylglycinamide ribonucleotide (FGAR) amidotransferase (PurL) and aminoimidazole ribonucleotide (AIR) synthetase (PurM) utilise ATP to activate the oxygen of an amide within their substrate toward nucleophilic attack by a nitrogen. AIR synthetase uses the product of PurL, formylglycinamidine ribonucleotide (FGAM) and ATP to make AIR, ADP and P(i).; GO: 0004641 phosphoribosylformylglycinamidine cyclo-ligase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=99.76  E-value=4.5e-18  Score=142.84  Aligned_cols=247  Identities=23%  Similarity=0.264  Sum_probs=134.2

Q ss_pred             CCCCEEEECC-CCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH---------------HHHHCCCCCHHHHHHHCCCCC
Q ss_conf             5763142037-776227973045321000010011356789777---------------641027851022322102456
Q gi|254780970|r  435 GDAGVIRVEG-HETKALAFSSDVTPRYVKADPFEGTKQAVAECW---------------RNIIATGAKPLAITDNLNFGN  498 (737)
Q Consensus       435 ~DaaVv~~~~-~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal---------------~Nl~a~Ga~Plait~~lnf~~  498 (737)
                      +=||++++.. .....|++|+|.          -|+++.||+++               .||+|.||+|+++.|-+.-+.
T Consensus        43 gFagl~~l~~~Y~~~~L~~~TDG----------VGTKl~vA~~~~khDTiGIDlVAMnVNDl~~~GAEPl~flDYlAvGk  112 (338)
T TIGR00878        43 GFAGLFDLGDKYKEPVLVSGTDG----------VGTKLKVAEAMDKHDTIGIDLVAMNVNDLLVQGAEPLFFLDYLAVGK  112 (338)
T ss_pred             CCEEEECCCCCCCCEEEEEECCC----------HHHHHHHHHHCCCCCCEEEEEEEEECCCEEEECCCHHHHHHHHHHCC
T ss_conf             52135115224752389984286----------66899999972889833012488532868884777578764666068


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CC---CCCCCCCCCCCCCEEEEECCCCCCCCCEE
Q ss_conf             66862134699999999852210288665443200112368666--76---31112222333520233102143898075
Q gi|254780970|r  499 PEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSI--FP---TPTIAGVGILPDYSLMTRIDSAHEGDLIL  573 (737)
Q Consensus       499 P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I--~p---Tpvi~~vG~v~d~~~~it~~~k~~Gd~I~  573 (737)
                      |+ ++   .+.+.++|+.+-|+.-|+.++||      ||-.-+-  ++   =+--+++|.|+ .+.++|...-++||+|+
T Consensus       113 ~d-~~---~~~~i~~G~~eGC~~ag~aLvGG------ETAemPG~y~~g~YDlAGt~VG~Ve-kd~iitG~~v~~GDv~i  181 (338)
T TIGR00878       113 LD-PE---VASQIVKGIAEGCKQAGCALVGG------ETAEMPGLYRGGEYDLAGTAVGVVE-KDEIITGEKVKPGDVLI  181 (338)
T ss_pred             CC-HH---HHHHHHHHHHHHHHHHCCEEECC------CCCCCCCCCCCCCEEECCEEEEEEE-ECCCCCCCCCCCCCEEE
T ss_conf             88-89---99999999998888717325447------5225778888865000131899996-21278823206787899


Q ss_pred             ECCCCCCCCCH-HHHHHHHHCCCCCCCCCCCHHHHH-----------HHHHHHHHHHHCCC-EEEEEECCCCHHHHHHHH
Q ss_conf             13776655432-678888611678999647989999-----------99999999999598-069946486579999999
Q gi|254780970|r  574 MIGNDGCHLDC-SMYSLECASSNIGPPPKVDCHLEK-----------NHGFFVLSMINAKK-ITACHDISTGGLIITLAE  640 (737)
Q Consensus       574 liG~~~~~Lgg-S~~~~~~~~~~~g~~p~~d~~~~k-----------~~~~~v~~li~~g~-I~S~HDiSdGGL~~aL~E  640 (737)
                      =+++++.|=.| |+.-+.+.....-..+.-....-|           =..+-+++++++.. |+..=-|+.|||.-.|.+
T Consensus       182 gl~SSG~HSNG~SLvRKvl~~~~~~~~~~~~~~~gk~lgE~LL~PTRIYVKpiL~li~~~~ev~GlAHiTGGGl~eNl~r  261 (338)
T TIGR00878       182 GLGSSGIHSNGLSLVRKVLEDNAALDYEDTVEEEGKTLGEELLEPTRIYVKPILALIKSEKEVHGLAHITGGGLLENLLR  261 (338)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHH
T ss_conf             83178731122677656664303588777457567231442238962044789999737786047775516403456998


Q ss_pred             HHHCCCCCEEEEECCCCCCCHHHHH--------------HCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             9845897089980566689878887--------------298832189999688099899999857984999899879
Q gi|254780970|r  641 MTISSAKGMDIILPIEIEKDPKPFL--------------FGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSG  704 (737)
Q Consensus       641 Ma~as~~G~~I~L~~~~~~d~~~~L--------------FsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~  704 (737)
                      + +..++.+.||-+..+......+|              ||.--| |++.|++|+.+++++.+.+++..+++||+|..
T Consensus       262 ~-L~~~~~a~~D~~~~~~~piF~~i~~~G~V~~~EM~RTFNMGVG-f~viv~~e~~~~al~~l~~~g~~a~~iG~V~~  337 (338)
T TIGR00878       262 R-LPDGLKAVIDKGSWPQPPIFKWIQELGNVEEEEMFRTFNMGVG-FVVIVPEEEVDKALALLEEKGEKAWVIGEVIK  337 (338)
T ss_pred             H-CCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCC-EEEEECCHHHHHHHHHHHHCCCEEEEECEEEE
T ss_conf             6-5899789985689883168899986089875555431277510-69981816589999986306960344134750


No 57 
>TIGR00878 purM phosphoribosylformylglycinamidine cyclo-ligase; InterPro: IPR004733   The purine biosynthetic pathway in procaryotes enlists eleven enzymes, six of which use ATP. Enzymes 5 and 6 of this pathway, formylglycinamide ribonucleotide (FGAR) amidotransferase (PurL) and aminoimidazole ribonucleotide (AIR) synthetase (PurM) utilise ATP to activate the oxygen of an amide within their substrate toward nucleophilic attack by a nitrogen. AIR synthetase uses the product of PurL, formylglycinamidine ribonucleotide (FGAM) and ATP to make AIR, ADP and P(i).; GO: 0004641 phosphoribosylformylglycinamidine cyclo-ligase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=99.76  E-value=1.6e-16  Score=132.33  Aligned_cols=261  Identities=26%  Similarity=0.377  Sum_probs=190.1

Q ss_pred             HHCCCCEEECCCCCEEEEEECCCE---EEEEEECCCCCCCCCCCCCCCCCCCC---------------CC------CCCC
Q ss_conf             206974899334773689836983---99999517887776588887210558---------------10------2257
Q gi|254780970|r   61 PTTGKHVIQGPGENAGVVDIGGGD---CVVFKMESHNHPSYIEPYQGAATGVG---------------GI------LRDI  116 (737)
Q Consensus        61 ~~~~~~vi~~~~~~a~vi~~~~~~---~~~~k~EtHNhPs~i~P~~GAaTg~g---------------G~------iRDi  116 (737)
                      .+..+.+..+.|-=||.+++.+.|   .++.                +.-|||               |+      ++|+
T Consensus        31 ~~~~~~~~~~~GgFagl~~l~~~Y~~~~L~~----------------~TDGVGTKl~vA~~~~khDTiGIDlVAMnVNDl   94 (338)
T TIGR00878        31 KTRRPGVMGGLGGFAGLFDLGDKYKEPVLVS----------------GTDGVGTKLKVAEAMDKHDTIGIDLVAMNVNDL   94 (338)
T ss_pred             HHCCCCCCCCCCCCEEEECCCCCCCCEEEEE----------------ECCCHHHHHHHHHHCCCCCCEEEEEEEEECCCE
T ss_conf             3124666545775213511522475238998----------------428666899999972889833012488532868


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC--CCCCEEEECCCCHHHHHH
Q ss_conf             677874368775045787568638889988874588665430872113203552156766--422112211211355431
Q gi|254780970|r  117 FTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNN--IIVNTFAAGIAKTNAIFS  194 (737)
Q Consensus       117 ~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~--~~v~~~~~Gi~~~~~~~~  194 (737)
                      +|.||+|++++|.|-.|.|+    .+++.++++|++..|.+-|+..|||+|...|+.-.+  .-..++|||+++++++++
T Consensus        95 ~~~GAEPl~flDYlAvGk~d----~~~~~~i~~G~~eGC~~ag~aLvGGETAemPG~y~~g~YDlAGt~VG~Vekd~iit  170 (338)
T TIGR00878        95 LVQGAEPLFFLDYLAVGKLD----PEVASQIVKGIAEGCKQAGCALVGGETAEMPGLYRGGEYDLAGTAVGVVEKDEIIT  170 (338)
T ss_pred             EEECCCHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEECCEEEEEEEECCCCC
T ss_conf             88477757876466606888----89999999999988887173254475225778888865000131899996212788


Q ss_pred             CCCCCCCCEEEEECCCCCCCCCHH--HHHHHHHHCCCCCCCCC-CCC-CCCHHHHHHH------HHHHHHHCCCCC-CHH
Q ss_conf             122568977999657656444104--66667772865333444-332-6798999888------999874011383-011
Q gi|254780970|r  195 SKARGIGLPLVYLGAKTGRDGIGG--ASMASEEFGENIAKKRP-TVQ-VGDPFTGKCL------LEACLELMNTDA-VIA  263 (737)
Q Consensus       195 ~~~~~~Gd~ii~~G~~tg~dGi~G--a~~sS~~~~~~~~~~~~-~VQ-~gdp~~ek~~------~~~~~~~~~~~~-i~~  263 (737)
                      .+.-++||.||=+++    .|+|-  =|.+-+.+.++...+.+ .+. -|-+..|..|      .+-|++++++.. |++
T Consensus       171 G~~v~~GDv~igl~S----SG~HSNG~SLvRKvl~~~~~~~~~~~~~~~gk~lgE~LL~PTRIYVKpiL~li~~~~ev~G  246 (338)
T TIGR00878       171 GEKVKPGDVLIGLGS----SGIHSNGLSLVRKVLEDNAALDYEDTVEEEGKTLGEELLEPTRIYVKPILALIKSEKEVHG  246 (338)
T ss_pred             CCCCCCCCEEEEECC----CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCCEEE
T ss_conf             232067878998317----8731122677656664303588777457567231442238962044789999737786047


Q ss_pred             CCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCC-------CCC-CCHHHHH--HCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf             0347752011122332014775289962022046-------678-9998986--17888508999954675889998887
Q gi|254780970|r  264 IQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTC-------EEG-MTAYEMM--LSESQERMLMILNPEKQHKAQEILNK  333 (737)
Q Consensus       264 ~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~-------~~~-l~~~ei~--~sEsQeR~~~~v~~~~~~~~~~i~~~  333 (737)
                      +=.++.|||...+.-+..+ ++.++||-...|..       +.| ..-.|++  ||=- ==|+++|++|+.++.++++++
T Consensus       247 lAHiTGGGl~eNl~r~L~~-~~~a~~D~~~~~~~piF~~i~~~G~V~~~EM~RTFNMG-VGf~viv~~e~~~~al~~l~~  324 (338)
T TIGR00878       247 LAHITGGGLLENLLRRLPD-GLKAVIDKGSWPQPPIFKWIQELGNVEEEEMFRTFNMG-VGFVVIVPEEEVDKALALLEE  324 (338)
T ss_pred             EEEECCCHHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHCCCC-CCEEEEECCHHHHHHHHHHHH
T ss_conf             7755164034569986589-97899856898831688999860898755554312775-106998181658999998630


Q ss_pred             HCCEEECCCCEEEC
Q ss_conf             09713112212104
Q gi|254780970|r  334 WGLHFSIIGITTND  347 (737)
Q Consensus       334 ~~~~~~~iG~vt~~  347 (737)
                      ++..+-+||+|.+.
T Consensus       325 ~g~~a~~iG~V~~~  338 (338)
T TIGR00878       325 KGEKAWVIGEVIKG  338 (338)
T ss_pred             CCCEEEEECEEEEC
T ss_conf             69603441347509


No 58 
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.74  E-value=2.6e-17  Score=137.69  Aligned_cols=265  Identities=22%  Similarity=0.353  Sum_probs=183.4

Q ss_pred             ECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             9334773689836983999995178877765888872--10558102257677874368775045787568638889988
Q gi|254780970|r   69 QGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGA--ATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSG  146 (737)
Q Consensus        69 ~~~~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P~~GA--aTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~  146 (737)
                      ..--||||+++++++|.++.---.|-.-|. =||=+-  +|-  -.+||+..|||+|+|+..-+...  ++.+.-.+|+ 
T Consensus       108 ~ee~DDaGvvr~~~~yivvaiDGiHSRLSe-fPFLaGFhvtR--AalRDv~vmGa~p~alisDiHla--DDgDVgklfD-  181 (449)
T COG1973         108 PEELDDAGVVRIENDYIVVAIDGIHSRLSE-FPFLAGFHVTR--AALRDVYVMGARPVALISDIHLA--DDGDVGKLFD-  181 (449)
T ss_pred             HHHCCCCCEEEECCCEEEEEECCHHHHHHC-CCCHHHHHHHH--HHHHHHHHCCCCCCEEEEEEEEC--CCCCHHHHHH-
T ss_conf             878477772773586699994133433112-75122468779--99988987276430335655633--6754656301-


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEC--CCCCCCCC-CEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf             8745886654308721132035521--56766422-11221121135543112256897799965765644410466667
Q gi|254780970|r  147 VVAGIAGYSNSFGVPTVGGEVEFLP--CYNNNIIV-NTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMAS  223 (737)
Q Consensus       147 ~~~G~~~ygN~~G~P~v~G~~~~~~--~y~~~~~v-~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS  223 (737)
                      -.+|+..-+...|+|.++|.|.---  ..-+..++ .++|+|+.+ ..+...+..+|||+|++.      .|-||++.+.
T Consensus       182 f~AGvtaVsea~~vPl~aGSTLRiGGDmVlGdRl~~~Vg~iGi~k-~~~t~Rr~~~~Gd~IlmT------EGaGGGTi~T  254 (449)
T COG1973         182 FTAGVTAVSEAVGVPLLAGSTLRIGGDMVLGDRLVGAVGAIGISK-SELTPRRRAEPGDVILMT------EGAGGGTIAT  254 (449)
T ss_pred             HHHHHHHHHHHHCCCEECCCCEEECCEEEEECHHHCCCCEEEEEC-CCCCHHCCCCCCCEEEEE------CCCCCCEEEH
T ss_conf             221265788874885433652577472676040103210256505-888701038888779994------2788855331


Q ss_pred             HHHCCCCCCCCCCCCCCCHHHHH---HHHHHHHHHCCCCC---CHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCC
Q ss_conf             77286533344433267989998---88999874011383---0110347752011122332014775289962022046
Q gi|254780970|r  224 EEFGENIAKKRPTVQVGDPFTGK---CLLEACLELMNTDA---VIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTC  297 (737)
Q Consensus       224 ~~~~~~~~~~~~~VQ~gdp~~ek---~~~~~~~~~~~~~~---i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~  297 (737)
                      ....-...+    |     ..|-   ..+++|..+.+.+|   |++|+|++.||+-.-.-|.+..+++++.+|.+|+-.-
T Consensus       255 TAiY~Gm~D----V-----v~ETlnv~fi~a~eai~~s~L~~~vhsMTDVTNGGiRgDA~EISkta~v~lvfDeekv~sl  325 (449)
T COG1973         255 TAIYHGMHD----V-----VEETLNVDFIRACEAIVRSGLLSDVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRSL  325 (449)
T ss_pred             HHHHCCCHH----H-----HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEECHHHHHHH
T ss_conf             444516278----8-----8876274899999999985056653454305477614437876553272699718999864


Q ss_pred             ----------CCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCCCC-CCCCCCC
Q ss_conf             ----------6789998986178885089999546758899988870971311221210443100-0258644
Q gi|254780970|r  298 ----------EEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRV-IHRGEEV  359 (737)
Q Consensus       298 ----------~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v-~~~g~~v  359 (737)
                                +-.++|+-    =|-.-.++.++++..+.+.+..+..++.+.+||.|++.+...+ .++|++.
T Consensus       326 iNpkVl~MLeel~ID~lG----vSiDslmii~ped~a~~v~k~~~~agvr~~~vG~Vee~~~~~~l~~~gee~  394 (449)
T COG1973         326 INPKVLKMLEELNIDPLG----VSIDSLMIIAPEDVADLVKKALRGAGVRAEEVGRVEEGGQGVILVDGGEER  394 (449)
T ss_pred             CCHHHHHHHHHCCCCCCC----CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCEEE
T ss_conf             098999999971888430----202017896661316999999874586236886663278421998799750


No 59 
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=99.73  E-value=2.4e-16  Score=131.02  Aligned_cols=260  Identities=19%  Similarity=0.268  Sum_probs=181.3

Q ss_pred             CCCCCCEEEECC-CCCCEEEEECCCCCCCHHCC----CH-HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf             135763142037-77622797304532100001----00-1135678977764102785102232210245666862134
Q gi|254780970|r  433 PGGDAGVIRVEG-HETKALAFSSDVTPRYVKAD----PF-EGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMG  506 (737)
Q Consensus       433 Pg~DaaVv~~~~-~~~~gia~s~g~~p~~~~~d----P~-~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~  506 (737)
                      .|+=+++.++.. ..+..++.++|.-.....+.    -| .-++=.|+-++.|++|.||+|++++|.+..+..+ ++.  
T Consensus        38 iGgF~gl~~~~~~~~~p~Lv~~tDGVGTK~~iA~~~~~~~tiG~DlVam~vNDil~~GA~Pl~flDY~a~~~l~-~~~--  114 (338)
T PRK05385         38 LGGFGGLFDLPAGYKEPVLVSGTDGVGTKLKLAIDLGKHDTIGIDLVAMCVNDLLVQGAEPLFFLDYIATGKLD-PEV--  114 (338)
T ss_pred             CCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCEEEEEEEEECCCCCC-HHH--
T ss_conf             76620445554468996799718887189999999576143306789752777666286732345551207889-899--


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCC----CCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCC
Q ss_conf             69999999985221028866544320011236866-676----3111222233352023310214389807513776655
Q gi|254780970|r  507 QFVHSVKGIREACQILDFPIVSGNVSFYNETNGQS-IFP----TPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCH  581 (737)
Q Consensus       507 ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~-I~p----Tpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~  581 (737)
                       ..+.++|++++|++.+++++||      ||..-+ +.+    -+.-+++|.++ .++.++....++||.|+-+.+++.|
T Consensus       115 -~~~iv~Gi~~~c~~~~~~LiGG------ETAemPg~y~~~~~DLaG~~VGive-k~~ii~~~~i~~GDviiGl~SsG~H  186 (338)
T PRK05385        115 -AAEVVKGIAEGCEQAGCALIGG------ETAEMPGMYHEGDYDLAGFAVGVVE-KDEIIDGSKVKEGDVLIGLASSGLH  186 (338)
T ss_pred             -HHHHHHHHHHHHHHCCCEEECC------CCCCCCCCCCCCCEEEEEEEEEEEE-CCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf             -9999999999999809804365------2101334356897736337999981-4223456668999889996079866


Q ss_pred             CCHHHHHHHHH-CCC---CCCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEE
Q ss_conf             43267888861-167---89996479-------89999999999999995980699464865799999999845897089
Q gi|254780970|r  582 LDCSMYSLECA-SSN---IGPPPKVD-------CHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMD  650 (737)
Q Consensus       582 LggS~~~~~~~-~~~---~g~~p~~d-------~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~  650 (737)
                      -.|-.+.+.+. ...   ....|..+       +..-+-....+++++++..|+++-.|+.|||...|..+. ..+++++
T Consensus       187 sNGySLiRki~~~~~~~~~~~~~~~~~tlge~LL~PTriY~~~i~~l~~~~~Ikg~aHITGGGl~~Nl~Ril-p~~l~a~  265 (338)
T PRK05385        187 SNGYSLVRKILEVAGLDLDDTLPELGKTLGEELLEPTRIYVKPVLALLKEGDVKGMAHITGGGFIENLPRVL-PEGLGAE  265 (338)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC-CCCCEEE
T ss_conf             550789999998749982325653468699986350677679999998627813999825885003654115-7880699


Q ss_pred             EEECCCCCCCHHHHH--------------HCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             980566689878887--------------2988321899996880998999998579849998998798
Q gi|254780970|r  651 IILPIEIEKDPKPFL--------------FGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS  705 (737)
Q Consensus       651 I~L~~~~~~d~~~~L--------------FsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~  705 (737)
                      |+.+..+....+.+|              |+-..| |++.|++++.+++++.+++++.++++||+|...
T Consensus       266 Id~~~w~~P~iF~~i~~~G~i~~~EM~rtFNmGIG-mvliV~~~~~~~v~~~l~~~g~~a~~IG~V~~g  333 (338)
T PRK05385        266 IDKGSWPVPPIFKWLQKAGNVEEEEMYRTFNMGIG-MVLIVPEEDADAALALLEARGEDAWVIGEVKEG  333 (338)
T ss_pred             EECCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCC-EEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             96677999889999998489899999874358222-699983899999999999769984898999979


No 60 
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism]
Probab=99.72  E-value=1e-16  Score=133.57  Aligned_cols=249  Identities=20%  Similarity=0.271  Sum_probs=173.2

Q ss_pred             CCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCC-CCCHHHHHHHH
Q ss_conf             13576314203777622797304532100001001135678977764102785102232210245666-86213469999
Q gi|254780970|r  433 PGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPE-KEEIMGQFVHS  511 (737)
Q Consensus       433 Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~-~~e~~~ql~~a  511 (737)
                      -++|++|..+.  .+.+++.|+|+.-.... |||.-++.|...+++|+.+||++|+....-++|++-. .++.   +.+.
T Consensus        48 ~~dda~vy~ig--~g~~iIsT~df~mpivd-dp~dfG~IaAtNaIsDv~amgg~pi~AiAI~g~~~~~l~~~i---~~ei  121 (346)
T COG0709          48 TGDDAAVYDLG--NGHSIISTTDFFMPIVD-DPFDFGRIAATNAISDVFAMGGKPIMAIAILGFPNDLLDKEI---AQEV  121 (346)
T ss_pred             CCCCCEEEEEC--CCEEEEEECCEEEECCC-CCCHHHHHHHCCCCCCHHHCCCCCHHHHHHCCCCCCCCCHHH---HHHH
T ss_conf             46762168846--98089983440224215-823220211112103466508961222211178422258899---9999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHH
Q ss_conf             99998522102886654432001123686667631112222333520233102143898075137766554326788886
Q gi|254780970|r  512 VKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLEC  591 (737)
Q Consensus       512 v~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS~~~~~~  591 (737)
                      ++|-.+.|++-++++.||+.-   + ...++.   -..+.|.++ ..+..+.+..++|+.|+++.   + +|-.+|....
T Consensus       122 ~~gg~~~~rea~i~lagGhsI---d-apEP~f---Glav~G~~~-~~k~~~n~~a~~G~~lilTK---P-lG~gil~ta~  189 (346)
T COG0709         122 IEGGRDACREAGIALAGGHSI---D-APEPIF---GLAVTGIVP-TGKVKRNSTAKAGCKLILTK---P-LGIGILTTAE  189 (346)
T ss_pred             HHHHHHHHHHHCCCCCCCCCC---C-CCCCCC---CEEEECCCC-HHHHCCCCCCCCCCEEEEEC---C-CCCCEEHHHH
T ss_conf             975478998718422488323---7-888430---415640435-66612256667786899914---7-5552321454


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHHHC-------CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
Q ss_conf             11678999647989999999999999995-------98069946486579999999984589708998056668987888
Q gi|254780970|r  592 ASSNIGPPPKVDCHLEKNHGFFVLSMINA-------KKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPF  664 (737)
Q Consensus       592 ~~~~~g~~p~~d~~~~k~~~~~v~~li~~-------g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~~d~~~~  664 (737)
                      ...      ....+......+.+.++++.       --|.|+.|||..||+.++.|||..+++.+++.....+..+..++
T Consensus       190 k~~------~L~~e~~~~ale~M~~lN~~~~~~~~~~gv~A~TDVTGfGLlghl~E~ae~s~v~~~lf~~~ip~l~~~e~  263 (346)
T COG0709         190 KKG------LLKEEHKGLALENMCTLNKIGAQFAPDFGVAAMTDVTGFGLLGHLKEMAEGAGVDARLFDSPIPFLDGVEF  263 (346)
T ss_pred             HHH------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             441------15888999999998633477897376678502432657408999999984359857997266787177999


Q ss_pred             H--------------------------------HC--CCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             7--------------------------------29--88321899996880998999998579849998998798
Q gi|254780970|r  665 L--------------------------------FG--EDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS  705 (737)
Q Consensus       665 L--------------------------------Fs--Es~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~  705 (737)
                      +                                .+  .++|.+++.|.++...++..+..+.++++..||++...
T Consensus       264 ~~e~g~iP~gt~~n~~s~~~~~~~~l~e~~~~lL~dpqtsgglliav~~~~~~~~~~i~~e~~~~~~~i~~l~~k  338 (346)
T COG0709         264 YIENGIIPGGTARNFGSYGIFAGKDLPEEQKLLLCDPQTSGGLLIAVVPEGKGEGLEIAPELGIQLIIIGELVAK  338 (346)
T ss_pred             HHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHEECCHHCCCEEHHHHHHHH
T ss_conf             997588768544332678886034551899987048877886699980466533202341312641045668874


No 61 
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase; InterPro: IPR010077   This entry describes a family of large proteins of herpes virus. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). The protein shows homology to eukaryotic FGAM-synthase. ; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0005198 structural molecule activity, 0019033 viral tegument.
Probab=99.71  E-value=1.7e-15  Score=125.21  Aligned_cols=280  Identities=20%  Similarity=0.299  Sum_probs=198.3

Q ss_pred             EEECCCCCEE---------EEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEECCCC
Q ss_conf             8993347736---------89836983999995178877765888872105581022576----7787436877504578
Q gi|254780970|r   67 VIQGPGENAG---------VVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIF----TMGARPVAAMNSLRFG  133 (737)
Q Consensus        67 vi~~~~~~a~---------vi~~~~~~~~~~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~----~~Ga~p~a~~~~l~~g  133 (737)
                      .|+.|.||..         +.-+||....+          ++||-.||.=++--.+=+.+    ..|-+=+.+|-.+.++
T Consensus       655 tiqvPddn~~~~~~~~~~~~~A~GEQ~~kv----------~~D~~~G~~yai~EALlNL~~sP~~~Gl~~~~iT~svtw~  724 (1313)
T TIGR01739       655 TIQVPDDNEVLENPALSGVCSALGEQAYKV----------QLDPKRGATYAITEALLNLSLSPVLTGLEDVIITLSVTWS  724 (1313)
T ss_pred             EEECCCCCCCCCCCCCEEEEEECCCCCEEE----------EECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECC
T ss_conf             687367776577765238999613223002----------4213566899999999998745300362424798888548


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC---CCC----------CC-CEE---EECCCCHHHHHHCC
Q ss_conf             75686388899888745886654308721132035521567---664----------22-112---21121135543112
Q gi|254780970|r  134 AIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYN---NNI----------IV-NTF---AAGIAKTNAIFSSK  196 (737)
Q Consensus       134 ~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~---~~~----------~v-~~~---~~Gi~~~~~~~~~~  196 (737)
                      .-+  .....+..+..-++|||.++||+..-..-.-.+...   .++          .- +|+   |-|.......++-.
T Consensus       725 ~~~--~~~~~L~~~l~~ck~FC~~LGV~~~~~~A~~~~~~~~~~~~~~~~~~~~vl~~~~IVfsa~~~~~~~~~~~iTPd  802 (1313)
T TIGR01739       725 PED--HVYSLLKEALRACKDFCEELGVSFTVTSAASSPTQSSRSAPTTIQRESKVLTFNSIVFSASAPVKLGSAKKITPD  802 (1313)
T ss_pred             CCC--HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEEEEECCCCCCCCCCC
T ss_conf             410--048999999999999997499169870257888888788885788653243012089999874136666645755


Q ss_pred             CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHH
Q ss_conf             25689779996576564441046666777286533-34443326798999888999874011383011034775201112
Q gi|254780970|r  197 ARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIA-KKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCS  275 (737)
Q Consensus       197 ~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~-~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a  275 (737)
                      -+..|+.||.|-- .-...+.|+.|.. .+..... ...+..   +|.+=+++..++.++.+++.|.|+||+|+|||.-+
T Consensus       803 lk~~Gs~L~~l~~-~~~~~laGSif~~-i~~~~~~~~~~~~~---~~~~l~~ll~~~~~L~~~~~I~SgHDvSDGGL~ac  877 (1313)
T TIGR01739       803 LKKHGSHLIWLSI-HQKLTLAGSIFEQ-ILGLSATIHRLPEL---SPESLKKLLKALQELVKEGVIVSGHDVSDGGLVAC  877 (1313)
T ss_pred             CCCCCCEEEEEEC-CCCCCHHHHHHHH-HHHCCCCCCCCCCC---CHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHH
T ss_conf             4478888999942-8972017679998-62103577656556---88999999999987765673588754361368999


Q ss_pred             HHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEEE---CCCCCC
Q ss_conf             23320147752899620220466789998986178885089999546758899988870971311221210---443100
Q gi|254780970|r  276 AIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTN---DKLFRV  352 (737)
Q Consensus       276 ~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~---~~~~~v  352 (737)
                      +.|||.+|+.|++|.|-.     ....|++.||||+.. +|+.|++++.+++...++..++-|.+||.|++   +..+.|
T Consensus       878 ~~EMAlaG~kgv~i~~P~-----~~~~~~~~l~SETPG-~viEV~~~~~~~v~~~l~~~~~~~~~iG~V~~~g~~~~~~v  951 (1313)
T TIGR01739       878 VAEMALAGGKGVRITLPA-----HITDPLEFLLSETPG-VVIEVEPESLKEVLQFLRSEGLVAAVIGRVGEEGESSTFSV  951 (1313)
T ss_pred             HHHHHHCCCCEEEEECCC-----CCCCHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHCCCCEEECCEEECCCCCCEEEE
T ss_conf             999996389648997176-----435568875305895-69997774088999999867971444017442579972799


Q ss_pred             CCCCCCCCCCCCCCCCC
Q ss_conf             02586443443210146
Q gi|254780970|r  353 IHRGEEVANLPIKALSD  369 (737)
Q Consensus       353 ~~~g~~v~dlp~~~L~~  369 (737)
                      .++++.+..-|+..|..
T Consensus       952 ~h~~~~l~~~~L~~l~~  968 (1313)
T TIGR01739       952 VHNSTVLFQESLSSLQG  968 (1313)
T ss_pred             EECCCEEEEEEHHHHHH
T ss_conf             97882688610023341


No 62 
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=99.64  E-value=4.5e-14  Score=115.46  Aligned_cols=260  Identities=21%  Similarity=0.262  Sum_probs=166.2

Q ss_pred             CCCCCCEEEECC-CCCCEEEEECCCCCCCHHCCCH-----HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf             135763142037-7762279730453210000100-----1135678977764102785102232210245666862134
Q gi|254780970|r  433 PGGDAGVIRVEG-HETKALAFSSDVTPRYVKADPF-----EGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMG  506 (737)
Q Consensus       433 Pg~DaaVv~~~~-~~~~gia~s~g~~p~~~~~dP~-----~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~  506 (737)
                      .|+=+++..+.. .....+++++|.-.....+..-     .-+.=.|+-++.|++|.||+|+++.|-+.-+.|+ ++.  
T Consensus        39 lGgf~~lf~l~~~~~~p~Lv~~tDGVGTKl~~A~~~~k~dTiGID~VAM~VNDlv~~GAePl~flDY~A~gk~~-~~~--  115 (345)
T COG0150          39 LGGFAGLFDLGQAYYKPVLVSGTDGVGTKLLLAEDAGKHDTIGIDLVAMCVNDLVVQGAEPLFFLDYLATGKLD-PEV--  115 (345)
T ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCHHEEECCHHHHCCCCHHHHHHHHHCCCCC-HHH--
T ss_conf             76415788726777542699628873389999998078543240010120311321585207877667308898-899--


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--C---CCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCC
Q ss_conf             6999999998522102886654432001123686667--6---3111222233352023310214389807513776655
Q gi|254780970|r  507 QFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIF--P---TPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCH  581 (737)
Q Consensus       507 ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~--p---Tpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~  581 (737)
                       ..+.++|+.+.|+..|+.++||      ||..-+-.  +   -+.-+++|.++. +.+++....++||.|+-+.+++.|
T Consensus       116 -~~~iv~GiaeGc~~ag~aLvGG------ETAeMPg~y~~g~yDlaG~~vGvvek-~~ii~g~~i~~GDviigl~SSG~H  187 (345)
T COG0150         116 -AAQIVKGIAEGCKQAGCALVGG------ETAEMPGMYRGGDYDLAGFAVGVVEK-DEIIDGSKVKEGDVIIGLASSGLH  187 (345)
T ss_pred             -HHHHHHHHHHHHHHHCCEEECC------CCCCCCCCCCCCCEEEEEEEEEEEEC-CCCCCCCCCCCCCEEEEECCCCCC
T ss_conf             -9999999999999849778532------45568885268843031169999875-643360116788789983378767


Q ss_pred             CCH-HHHHHHHHCCCCCC---CCCCC--------HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCE
Q ss_conf             432-67888861167899---96479--------8999999999999999598069946486579999999984589708
Q gi|254780970|r  582 LDC-SMYSLECASSNIGP---PPKVD--------CHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGM  649 (737)
Q Consensus       582 Lgg-S~~~~~~~~~~~g~---~p~~d--------~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~  649 (737)
                      -.| |...+.+.......   .|...        ++.-|-..+.+++++++..|+++-.|+.||+.-.|-.| +..++++
T Consensus       188 SNGySLvRKi~~~~~~~~~~~~~~~~g~~l~e~LL~PTrIYvk~vL~l~~~~~vkg~AHITGGG~~eNl~Rv-~p~~l~a  266 (345)
T COG0150         188 SNGYSLVRKIIEESGLDYDDELPEELGKTLGEELLEPTRIYVKPVLALIKEGDVKGMAHITGGGFVENLPRV-LPEGLGA  266 (345)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEECCCCHHHHCHHH-CCCCCEE
T ss_conf             784089999997547654445752235578998527726555879999752785367775377714427333-6766169


Q ss_pred             EEEECCCCCCCHHHHH--------------HCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             9980566689878887--------------2988321899996880998999998579849998998798
Q gi|254780970|r  650 DIILPIEIEKDPKPFL--------------FGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS  705 (737)
Q Consensus       650 ~I~L~~~~~~d~~~~L--------------FsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~  705 (737)
                      .|+.+...-.....+|              |+-.-| |++.|++++.+++++.++..|.++++||+|...
T Consensus       267 ~id~~~~~~p~iF~~i~~~G~v~~~EM~rtFNmGvG-~v~iv~~e~~~~~~~~l~~~g~~a~~iG~V~~~  335 (345)
T COG0150         267 VIDKPSWPPPPIFKWLQKAGNVEREEMYRTFNMGVG-MVLIVPEEDAEKALALLKEQGETAYVIGRVEAG  335 (345)
T ss_pred             EECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCC-EEEEECHHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf             982798887589999998469899999987267664-699976788999999998569742898899837


No 63 
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=99.59  E-value=1.9e-14  Score=118.09  Aligned_cols=269  Identities=22%  Similarity=0.325  Sum_probs=182.7

Q ss_pred             HCCCCEEECCCCCEEEEEECCCE---EEE-------------EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             06974899334773689836983---999-------------99517887776588887210558102257677874368
Q gi|254780970|r   62 TTGKHVIQGPGENAGVVDIGGGD---CVV-------------FKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVA  125 (737)
Q Consensus        62 ~~~~~vi~~~~~~a~vi~~~~~~---~~~-------------~k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a  125 (737)
                      |..++++.+.|-=++.++++..+   .++             +++-.|+   .|     -..+|.=.++|+++.||+|++
T Consensus        30 T~r~~v~gglGgf~~lf~l~~~~~~p~Lv~~tDGVGTKl~~A~~~~k~d---Ti-----GID~VAM~VNDlv~~GAePl~  101 (345)
T COG0150          30 TRRPEVMGGLGGFAGLFDLGQAYYKPVLVSGTDGVGTKLLLAEDAGKHD---TI-----GIDLVAMCVNDLVVQGAEPLF  101 (345)
T ss_pred             HCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHCCCC---CC-----CCCHHEEECCHHHHCCCCHHH
T ss_conf             2576534577641578872677754269962887338999999807854---32-----400101203113215852078


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCC-CCCCEEEECCCCHHHHHHCCCCCCCCE
Q ss_conf             77504578756863888998887458866543087211320355215-6766-422112211211355431122568977
Q gi|254780970|r  126 AMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPC-YNNN-IIVNTFAAGIAKTNAIFSSKARGIGLP  203 (737)
Q Consensus       126 ~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~-y~~~-~~v~~~~~Gi~~~~~~~~~~~~~~Gd~  203 (737)
                      .+|.|-.|.++..    ...++++|++..|-+.|+..|||+|.-.|. |.+. .-+.++|+|++++++++.....++||.
T Consensus       102 flDY~A~gk~~~~----~~~~iv~GiaeGc~~ag~aLvGGETAeMPg~y~~g~yDlaG~~vGvvek~~ii~g~~i~~GDv  177 (345)
T COG0150         102 FLDYLATGKLDPE----VAAQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVKEGDV  177 (345)
T ss_pred             HHHHHHCCCCCHH----HHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCE
T ss_conf             7766730889889----999999999999998497785324556888526884303116999987564336011678878


Q ss_pred             EEEECCCCCCCCCHHHHH--HHHHHCCC---CCCCCCCCCCCCHHHHHH------HHHHHHHHCCCCCCHHCCCCCCCCH
Q ss_conf             999657656444104666--67772865---333444332679899988------8999874011383011034775201
Q gi|254780970|r  204 LVYLGAKTGRDGIGGASM--ASEEFGEN---IAKKRPTVQVGDPFTGKC------LLEACLELMNTDAVIAIQDMGAAGL  272 (737)
Q Consensus       204 ii~~G~~tg~dGi~Ga~~--sS~~~~~~---~~~~~~~VQ~gdp~~ek~------~~~~~~~~~~~~~i~~~~D~gaGGl  272 (737)
                      ||-+++    .|+|-.-|  .-+.+.++   .....+.- .|.+..+-.      -.+.+++++++..|++|-.++.||+
T Consensus       178 iigl~S----SG~HSNGySLvRKi~~~~~~~~~~~~~~~-~g~~l~e~LL~PTrIYvk~vL~l~~~~~vkg~AHITGGG~  252 (345)
T COG0150         178 IIGLAS----SGLHSNGYSLVRKIIEESGLDYDDELPEE-LGKTLGEELLEPTRIYVKPVLALIKEGDVKGMAHITGGGF  252 (345)
T ss_pred             EEEECC----CCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf             998337----87677840899999975476544457522-3557899852772655587999975278536777537771


Q ss_pred             HHHHHHHHCCCCCCEEEEEHHHCCC-------CCC-CCHHHHHH--CCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCC
Q ss_conf             1122332014775289962022046-------678-99989861--7888508999954675889998887097131122
Q gi|254780970|r  273 TCSAIEMGNQGNLGITLDLDKVPTC-------EEG-MTAYEMML--SESQERMLMILNPEKQHKAQEILNKWGLHFSIIG  342 (737)
Q Consensus       273 ~~a~~Ema~~~~~G~~i~l~~vp~~-------~~~-l~~~ei~~--sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG  342 (737)
                      .-.+.-|..+ +++++|+....+..       +.+ .+..|.+-  | --=-|+++|++++.+++.++++..+.++.+||
T Consensus       253 ~eNl~Rv~p~-~l~a~id~~~~~~p~iF~~i~~~G~v~~~EM~rtFN-mGvG~v~iv~~e~~~~~~~~l~~~g~~a~~iG  330 (345)
T COG0150         253 VENLPRVLPE-GLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRTFN-MGVGMVLIVPEEDAEKALALLKEQGETAYVIG  330 (345)
T ss_pred             HHHCHHHCCC-CCEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHC-CCCCEEEEECHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             4427333676-616998279888758999999846989999998726-76646999767889999999985697428988


Q ss_pred             CEEECCC
Q ss_conf             1210443
Q gi|254780970|r  343 ITTNDKL  349 (737)
Q Consensus       343 ~vt~~~~  349 (737)
                      +|.+...
T Consensus       331 ~V~~~~~  337 (345)
T COG0150         331 RVEAGEG  337 (345)
T ss_pred             EEEECCC
T ss_conf             9983798


No 64 
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.57  E-value=6e-14  Score=114.57  Aligned_cols=256  Identities=17%  Similarity=0.273  Sum_probs=166.0

Q ss_pred             CCCC--CCCCCEEEECCCCCCEEEEECCC-CCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf             0001--35763142037776227973045-32100001001135678977764102785102232210245666862134
Q gi|254780970|r  430 IQLP--GGDAGVIRVEGHETKALAFSSDV-TPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMG  506 (737)
Q Consensus       430 v~~P--g~DaaVv~~~~~~~~gia~s~g~-~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~  506 (737)
                      +.-|  .+|++|++++.   ..++.++|. ..|++. =|+.++.++---|+|+++.||++|+++.--+....   ...-+
T Consensus       105 ~vs~ee~DDaGvvr~~~---~yivvaiDGiHSRLSe-fPFLaGFhvtRAalRDv~vmGa~p~alisDiHlaD---DgDVg  177 (449)
T COG1973         105 VVSPEELDDAGVVRIEN---DYIVVAIDGIHSRLSE-FPFLAGFHVTRAALRDVYVMGARPVALISDIHLAD---DGDVG  177 (449)
T ss_pred             CCCHHHCCCCCEEEECC---CEEEEEECCHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC---CCCHH
T ss_conf             06887847777277358---6699994133433112-75122468779999889872764303356556336---75465


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CC---CCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCC
Q ss_conf             69999999985221028866544320011236866-67---631112222333520233102143898075137766554
Q gi|254780970|r  507 QFVHSVKGIREACQILDFPIVSGNVSFYNETNGQS-IF---PTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHL  582 (737)
Q Consensus       507 ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~-I~---pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~L  582 (737)
                      .++.-..|+.-.|.+.++|+++|..    ---+.+ +.   -+--++++|..+  .+.......++||+|+++-   ..-
T Consensus       178 klfDf~AGvtaVsea~~vPl~aGST----LRiGGDmVlGdRl~~~Vg~iGi~k--~~~t~Rr~~~~Gd~IlmTE---GaG  248 (449)
T COG1973         178 KLFDFTAGVTAVSEAVGVPLLAGST----LRIGGDMVLGDRLVGAVGAIGISK--SELTPRRRAEPGDVILMTE---GAG  248 (449)
T ss_pred             HHHHHHHHHHHHHHHHCCCEECCCC----EEECCEEEEECHHHCCCCEEEEEC--CCCCHHCCCCCCCEEEEEC---CCC
T ss_conf             6301221265788874885433652----577472676040103210256505--8887010388887799942---788


Q ss_pred             CHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC---EEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-
Q ss_conf             3267888861-167899964798999999999999999598---06994648657999999998458970899805666-
Q gi|254780970|r  583 DCSMYSLECA-SSNIGPPPKVDCHLEKNHGFFVLSMINAKK---ITACHDISTGGLIITLAEMTISSAKGMDIILPIEI-  657 (737)
Q Consensus       583 ggS~~~~~~~-~~~~g~~p~~d~~~~k~~~~~v~~li~~g~---I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~-  657 (737)
                      ||.+....++ +-..-.-..+|...    ..+++.++++++   |+|+.|++.||+-....|.+-..++++.+|-+... 
T Consensus       249 GGTi~TTAiY~Gm~DVv~ETlnv~f----i~a~eai~~s~L~~~vhsMTDVTNGGiRgDA~EISkta~v~lvfDeekv~s  324 (449)
T COG1973         249 GGTIATTAIYHGMHDVVEETLNVDF----IRACEAIVRSGLLSDVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRS  324 (449)
T ss_pred             CCEEEHHHHHCCCHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEECHHHHHH
T ss_conf             8553314445162788887627489----999999998505665345430547761443787655327269971899986


Q ss_pred             CCCH--HHHH-------HCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             8987--8887-------2988321899996880998999998579849998998798
Q gi|254780970|r  658 EKDP--KPFL-------FGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS  705 (737)
Q Consensus       658 ~~d~--~~~L-------FsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~  705 (737)
                      ..+|  +..|       |+-|.-.+++-.+++..+.+.+.++..|+.+..||.|.+.
T Consensus       325 liNpkVl~MLeel~ID~lGvSiDslmii~ped~a~~v~k~~~~agvr~~~vG~Vee~  381 (449)
T COG1973         325 LINPKVLKMLEELNIDPLGVSIDSLMIIAPEDVADLVKKALRGAGVRAEEVGRVEEG  381 (449)
T ss_pred             HCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf             409899999997188843020201789666131699999987458623688666327


No 65 
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism]
Probab=99.55  E-value=3.4e-13  Score=109.46  Aligned_cols=276  Identities=23%  Similarity=0.336  Sum_probs=195.8

Q ss_pred             CCCCCCCHHHHHHHHHC------CCCEEEC--CCCCEEEEEECCCEEEEEEECCCCCCCCCCCCC-C--CCCCCCCCCCC
Q ss_conf             10744588999751206------9748993--347736898369839999951788777658888-7--21055810225
Q gi|254780970|r   47 HCSYKSSKKWLRTLPTT------GKHVIQG--PGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQ-G--AATGVGGILRD  115 (737)
Q Consensus        47 HC~~k~~~~~l~~~~~~------~~~vi~~--~~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P~~-G--AaTg~gG~iRD  115 (737)
                      -|--|.|.+.|.++-..      -++.+.|  -+|||+|.+++++..++-+.. -=-|=-=+||. |  |||-   .|-|
T Consensus        16 g~gck~sp~vL~qil~~~~a~~~~~~~lvgn~~~dda~vy~ig~g~~iIsT~d-f~mpivddp~dfG~IaAtN---aIsD   91 (346)
T COG0709          16 GCGCKISPKVLEQILHGTPAKPDFAKLLVGNETGDDAAVYDLGNGHSIISTTD-FFMPIVDDPFDFGRIAATN---AISD   91 (346)
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCEEEEECCCEEEEEECC-EEEECCCCCCHHHHHHHCC---CCCC
T ss_conf             65222579999999723867887467763355467621688469808998344-0224215823220211112---1034


Q ss_pred             CCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHC
Q ss_conf             76778743687750457875686388899888745886654308721132035521567664221122112113554311
Q gi|254780970|r  116 IFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSS  195 (737)
Q Consensus       116 i~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~  195 (737)
                      +++||++|+..+..++|.+-..  ...++.+++.|..+-+.+-|+++.+|+.--++    -|.-.-...|++...+..+.
T Consensus        92 v~amgg~pi~AiAI~g~~~~~l--~~~i~~ei~~gg~~~~rea~i~lagGhsIdap----EP~fGlav~G~~~~~k~~~n  165 (346)
T COG0709          92 VFAMGGKPIMAIAILGFPNDLL--DKEIAQEVIEGGRDACREAGIALAGGHSIDAP----EPIFGLAVTGIVPTGKVKRN  165 (346)
T ss_pred             HHHCCCCCHHHHHHCCCCCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCCEEEECCCCHHHHCCC
T ss_conf             6650896122221117842225--88999999975478998718422488323788----84304156404356661225


Q ss_pred             CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCHHCCCCC
Q ss_conf             22568977999657656444104666677728653334443326798999888999874011-------38301103477
Q gi|254780970|r  196 KARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMN-------TDAVIAIQDMG  268 (737)
Q Consensus       196 ~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~-------~~~i~~~~D~g  268 (737)
                      ...++|+.|++.- |   .|+|=  . +..+-++.   .      .|+-.++.++..+.+..       .--|.+|.|++
T Consensus       166 ~~a~~G~~lilTK-P---lG~gi--l-~ta~k~~~---L------~~e~~~~ale~M~~lN~~~~~~~~~~gv~A~TDVT  229 (346)
T COG0709         166 STAKAGCKLILTK-P---LGIGI--L-TTAEKKGL---L------KEEHKGLALENMCTLNKIGAQFAPDFGVAAMTDVT  229 (346)
T ss_pred             CCCCCCCEEEEEC-C---CCCCE--E-HHHHHHHC---C------CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCC
T ss_conf             6667786899914-7---55523--2-14544411---5------88899999999863347789737667850243265


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEEHHHCCCCC---------------------------CCCHHHHH-HC--CCCCEEEEE
Q ss_conf             5201112233201477528996202204667---------------------------89998986-17--888508999
Q gi|254780970|r  269 AAGLTCSAIEMGNQGNLGITLDLDKVPTCEE---------------------------GMTAYEMM-LS--ESQERMLMI  318 (737)
Q Consensus       269 aGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~---------------------------~l~~~ei~-~s--EsQeR~~~~  318 (737)
                      .-||...+.|||+.+++.++++.++||.-+-                           .|.-|+.. ++  -+|+-++++
T Consensus       230 GfGLlghl~E~ae~s~v~~~lf~~~ip~l~~~e~~~e~g~iP~gt~~n~~s~~~~~~~~l~e~~~~lL~dpqtsggllia  309 (346)
T COG0709         230 GFGLLGHLKEMAEGAGVDARLFDSPIPFLDGVEFYIENGIIPGGTARNFGSYGIFAGKDLPEEQKLLLCDPQTSGGLLIA  309 (346)
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEE
T ss_conf             74089999999843598579972667871779999975887685443326788860345518999870488778866999


Q ss_pred             EECCCHHHHHHHHHHHCCEEECCCCEEECC
Q ss_conf             954675889998887097131122121044
Q gi|254780970|r  319 LNPEKQHKAQEILNKWGLHFSIIGITTNDK  348 (737)
Q Consensus       319 v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~  348 (737)
                      |.+|...++.++.+.|++++..||++....
T Consensus       310 v~~~~~~~~~~i~~e~~~~~~~i~~l~~k~  339 (346)
T COG0709         310 VVPEGKGEGLEIAPELGIQLIIIGELVAKQ  339 (346)
T ss_pred             EECCCCCCHHEECCHHCCCEEHHHHHHHHC
T ss_conf             804665332023413126410456688742


No 66 
>KOG1907 consensus
Probab=99.55  E-value=1.8e-13  Score=111.28  Aligned_cols=163  Identities=20%  Similarity=0.361  Sum_probs=106.7

Q ss_pred             CCCCEE--EEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHH
Q ss_conf             689779--996576564441046666777286533344433267989998889998740113830110347752011122
Q gi|254780970|r  199 GIGLPL--VYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSA  276 (737)
Q Consensus       199 ~~Gd~i--i~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~  276 (737)
                      .+|+..  +-+--..++--+||++.+....  ....|.|.+-  |--.-|++.+.+..+...|+|.+-||.++|||.+++
T Consensus       836 ~~gs~~~Ll~i~l~~~k~rLGgSaLaQvy~--QiG~d~Pdl~--~~~~lk~~f~~vqqL~~~~ii~AgHD~SDGGLlvt~  911 (1320)
T KOG1907         836 VDGSKTSLLWIDLANSKMRLGGSALAQVYS--QIGDDCPDLD--NFDELKKFFSVVQQLLNEGIILAGHDISDGGLLVTL  911 (1320)
T ss_pred             CCCCCEEEEEEECCCCCCCCCHHHHHHHHH--HHCCCCCCCC--CHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHH
T ss_conf             899721799998455322354589999999--7378899853--348898899999999756733425535677200889


Q ss_pred             HHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCE----EECCCCCC
Q ss_conf             33201477528996202204667899989861788850899995467588999888709713112212----10443100
Q gi|254780970|r  277 IEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT----TNDKLFRV  352 (737)
Q Consensus       277 ~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~v----t~~~~~~v  352 (737)
                      .|||+++++|++|||+.-   ..++.+.+++++|-- -.++.|...|++++++++++.++.+..||++    +.+.++.+
T Consensus       912 lEMAfag~~gi~idl~~~---~~~~~~~~~LF~EEl-G~v~evs~~dl~~v~~~~~~~gv~~~~ig~~~~~~g~~~~i~~  987 (1320)
T KOG1907         912 LEMAFAGNVGIEIDLDSP---NQNIKLFDILFAEEL-GAVLEVSDTDLEKVLEIFSEAGVKCEYIGKASAVFGQDAHIKI  987 (1320)
T ss_pred             HHHHHHCCCCEEEECCCC---CCCCCHHHHHHHHHH-CEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEE
T ss_conf             998760466227854774---345618889989861-7177862653999999998649861254110034477745999


Q ss_pred             CCCCCCCCCCCCCCCCC
Q ss_conf             02586443443210146
Q gi|254780970|r  353 IHRGEEVANLPIKALSD  369 (737)
Q Consensus       353 ~~~g~~v~dlp~~~L~~  369 (737)
                      ..++..+.+-++.+|.+
T Consensus       988 ~~~g~~~~~~~~s~L~~ 1004 (1320)
T KOG1907         988 SVNGHLILNEKLSDLRE 1004 (1320)
T ss_pred             ECCCEEEECCHHHHHHH
T ss_conf             51885784454789999


No 67 
>TIGR00476 selD selenide, water dikinase; InterPro: IPR004536 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide, water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence scoring above the trusted cut-off but not aligning to the beginning of the HMM is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence.; GO: 0004756 selenide water dikinase activity, 0005524 ATP binding.
Probab=99.49  E-value=3.1e-13  Score=109.74  Aligned_cols=269  Identities=19%  Similarity=0.251  Sum_probs=184.1

Q ss_pred             CCCEEEC--CC------CCEEEEEECCCEEEEEEECCCCCCCCCCCC-CC--CCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             9748993--34------773689836983999995178877765888-87--2105581022576778743687750457
Q gi|254780970|r   64 GKHVIQG--PG------ENAGVVDIGGGDCVVFKMESHNHPSYIEPY-QG--AATGVGGILRDIFTMGARPVAAMNSLRF  132 (737)
Q Consensus        64 ~~~vi~~--~~------~~a~vi~~~~~~~~~~k~EtHNhPs~i~P~-~G--AaTg~gG~iRDi~~~Ga~p~a~~~~l~~  132 (737)
                      .++.+.|  .+      |||+|++-+++..++-++.- =.|=-=||| .|  |+|-+   +-||.+||..|+..+-.++|
T Consensus        41 ~~n~lvG~~~~rlGiGmDdA~v~~~~nG~~~v~T~D~-~~PiVddPY~~G~IAaaN~---~SDiYAMG~~~i~~~l~~~~  116 (372)
T TIGR00476        41 DDNLLVGAVLRRLGIGMDDAAVYERHNGLSLVKTVDV-ITPIVDDPYLFGRIAAANA---LSDIYAMGGLPIVALLILVG  116 (372)
T ss_pred             CCCCEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEE-EEEEECCHHHHHHHHHHHH---HHHHHHCCCCCHHHEEEEEC
T ss_conf             7210101000104323343113531798899996338-9832568355448998756---77777437732101433303


Q ss_pred             CCCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             875686--388899888745886654308721132035521567664221122112113554311225689779996576
Q gi|254780970|r  133 GAIHHP--KTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAK  210 (737)
Q Consensus       133 g~~~~p--~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~  210 (737)
                      -+-+.+  +-..+++++++|..|++.+-|+-++||++--+    ..|+....+-||++.++.+.....++||++|+. .|
T Consensus       117 ~~~kL~drer~~v~Rev~~G~~d~~reakt~~~GGhtil~----pwp~~Gg~vtgv~~~~~~~~~~~a~~G~~L~LT-KP  191 (372)
T TIGR00476       117 VSNKLSDRERIEVVREVIKGFKDACREAKTALVGGHTILN----PWPVFGGAVTGVCPEEEVITKSGAQVGDVLILT-KP  191 (372)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCEEECC----CCCCCCCEEEEECCCCCEECCCCCCCCCEEEEE-CC
T ss_conf             5666875444201068776588888768907973621127----620005406310278847525887424167851-75


Q ss_pred             CCCCCCHHHHHHHHHHCCCCC---CCCCCCCCCCHHHHHHH-----------HHHH---HHHCCCCCCHHCCCCCCCCHH
Q ss_conf             564441046666777286533---34443326798999888-----------9998---740113830110347752011
Q gi|254780970|r  211 TGRDGIGGASMASEEFGENIA---KKRPTVQVGDPFTGKCL-----------LEAC---LELMNTDAVIAIQDMGAAGLT  273 (737)
Q Consensus       211 tg~dGi~Ga~~sS~~~~~~~~---~~~~~VQ~gdp~~ek~~-----------~~~~---~~~~~~~~i~~~~D~gaGGl~  273 (737)
                         .|.+=+...++.+++-..   .+.+=.|-.+-+..++-           +.++   .++....-.+|++|++.-||.
T Consensus       192 ---LGtqv~~~~~~~~~~~~~~nkik~~i~~ee~~~~~~~A~e~M~~~Nryalkal~~A~~~~~~~~~~A~TDvTGFGlL  268 (372)
T TIGR00476       192 ---LGTQVLVAVEKKLDIFKDLNKIKLSILKEERELIINEAIENMARLNRYALKALRKAAELMNSKDAKALTDVTGFGLL  268 (372)
T ss_pred             ---CHHHHHHHHHHCCCCHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHH
T ss_conf             ---16899998763112001104146786075278899899999998889999999998876644187153114565456


Q ss_pred             HHHHHHHCCCCCCEEEEEHHHCCCCC----------------C------------CCHH-HHHHCCCC--CEEEEEEECC
Q ss_conf             12233201477528996202204667----------------8------------9998-98617888--5089999546
Q gi|254780970|r  274 CSAIEMGNQGNLGITLDLDKVPTCEE----------------G------------MTAY-EMMLSESQ--ERMLMILNPE  322 (737)
Q Consensus       274 ~a~~Ema~~~~~G~~i~l~~vp~~~~----------------~------------l~~~-ei~~sEsQ--eR~~~~v~~~  322 (737)
                      .-+.|||..+++.++|+.+++|.-..                +            |.-| ..+++|-|  ..|++.|.++
T Consensus       269 GH~~~~ak~~~~~~~~~~e~lP~l~~~~~~~k~~~~~~G~~~g~~~~~~G~L~~~~~~~~~~ll~~~~~S~~y~~~~~~~  348 (372)
T TIGR00476       269 GHAQEMAKNSNVEARIVYEKLPVLKKVEELSKLKGVPLGAIEGLETAGSGLLLSELPREKAALLCDPVKSGGYLFEVQKE  348 (372)
T ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHH
T ss_conf             88999874078669999530887354578898632433121354212674221357078986426101051357766688


Q ss_pred             CHHHHHH-HHHHHCCEEECCCCE
Q ss_conf             7588999-888709713112212
Q gi|254780970|r  323 KQHKAQE-ILNKWGLHFSIIGIT  344 (737)
Q Consensus       323 ~~~~~~~-i~~~~~~~~~~iG~v  344 (737)
                      ..+.+.+ -....+++...|||+
T Consensus       349 ~~~~v~~G~~~~~~v~~~~IgE~  371 (372)
T TIGR00476       349 VKEKVEKGTAKEKEVELIEIGEV  371 (372)
T ss_pred             HHHHHHHHHHHHHHCCEEEEEEE
T ss_conf             85111010134330450254310


No 68 
>KOG0237 consensus
Probab=99.45  E-value=2.5e-12  Score=103.52  Aligned_cols=263  Identities=23%  Similarity=0.276  Sum_probs=168.1

Q ss_pred             CCCCCCCC------EEEEC--CCCCCEEEEECCCCCCCHHCCCH-----HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC
Q ss_conf             00135763------14203--77762279730453210000100-----1135678977764102785102232210245
Q gi|254780970|r  431 QLPGGDAG------VIRVE--GHETKALAFSSDVTPRYVKADPF-----EGTKQAVAECWRNIIATGAKPLAITDNLNFG  497 (737)
Q Consensus       431 ~~Pg~Daa------Vv~~~--~~~~~gia~s~g~~p~~~~~dP~-----~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~  497 (737)
                      +.||.|+.      +.++.  +..+..++..+|.-.....+.-.     .-+.--|+-++.|+++.||+|++..|-+..+
T Consensus       464 ~rpG~~~diGGFgglfdLk~ag~~d~~Lv~~tdGVGtKl~iA~~~~~hdtvG~DlvAm~vNDii~~gAePl~FLDYfa~g  543 (788)
T KOG0237         464 RRPGADADIGGFGGLFDLKQAGFKDPLLVSGTDGVGTKLKIAQETNIHDTVGIDLVAMNVNDIIVQGAEPLFFLDYFATG  543 (788)
T ss_pred             CCCCCCCCCCCCCEEEEHHHCCCCCCEEEEECCCCCCEEEHHHHHCCCCCCCEEEEEEEHHHHHHCCCCCEEEHHHHHHC
T ss_conf             58874246666210000543588885688732676510201245076545250001200114755177530022235306


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEE
Q ss_conf             66686213469999999985221028866544320----01123686667631112222333520233102143898075
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS----FYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLIL  573 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvS----l~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~  573 (737)
                      .-+-+-    -.+.++|+.+.|++.++.++||-.+    ||....+.     +.=+++|.++.-..+..++--.+||.|+
T Consensus       544 kLd~~v----a~~~v~gia~gC~qa~CaLvGGETaEMP~~Y~~g~yD-----laG~Avga~e~~~iLp~~~ei~~GDVll  614 (788)
T KOG0237         544 KLDVSV----AEQVVKGIAEGCRQAGCALVGGETAEMPGMYAPGEYD-----LAGFAVGAVERTDILPKLNEIVAGDVLL  614 (788)
T ss_pred             CCCHHH----HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCC-----CCCCEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf             504178----9999999998776506512156323477888988315-----4551676662267577723255686799


Q ss_pred             ECCCCCCCC-CHHHHHHHHHCC--CCCC-CCCCCH--------HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf             137766554-326788886116--7899-964798--------9999999999999995980699464865799999999
Q gi|254780970|r  574 MIGNDGCHL-DCSMYSLECASS--NIGP-PPKVDC--------HLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEM  641 (737)
Q Consensus       574 liG~~~~~L-ggS~~~~~~~~~--~~g~-~p~~d~--------~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EM  641 (737)
                      =+.+.+-+- |-|+..+.+...  .... .|-.+-        ...|-..+.++.+++++.|.++-.|+.|||.-.+-.+
T Consensus       615 GL~SsGvHSNGfSLvrkil~~~~l~~~~~~P~~~~~tlGd~LL~pTkiYvk~ll~~i~~g~vkg~AHITGGGl~ENipRv  694 (788)
T KOG0237         615 GLPSSGVHSNGFSLVRKILARSGLSYKDPLPWDSSKTLGDELLAPTKIYVKQLLPLIRKGGVKGLAHITGGGLTENIPRV  694 (788)
T ss_pred             ECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH
T ss_conf             54666645572789999998608765788999765641144426507751142788873551225664178721265011


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHH--------------HCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             845897089980566689878887--------------298832189999688099899999857984999899879
Q gi|254780970|r  642 TISSAKGMDIILPIEIEKDPKPFL--------------FGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSG  704 (737)
Q Consensus       642 a~as~~G~~I~L~~~~~~d~~~~L--------------FsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~  704 (737)
                       +.+++++.||.+...-.....||              |+-..| +|+.|.+++++.+++.+++.+-.+++||+|..
T Consensus       695 -lp~~l~~~id~~twe~p~vF~Wl~~aG~v~~~em~RTfN~GiG-mVlvVs~e~ve~v~kel~~~~e~~~~iG~vv~  769 (788)
T KOG0237         695 -LPDHLGAVIDADTWELPPVFKWLQQAGNVPDSEMARTFNCGIG-MVLVVSPENVERVLKELTNHGEEAYRIGEVVN  769 (788)
T ss_pred             -CCCCCCEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCC-EEEEECHHHHHHHHHHHHHCCEEEEEEEEEEE
T ss_conf             -6522453784443447378899987389987998877355665-69998688999999998527817999876763


No 69 
>pfam00586 AIRS AIR synthase related protein, N-terminal domain. This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=99.39  E-value=1.5e-13  Score=111.86  Aligned_cols=92  Identities=39%  Similarity=0.577  Sum_probs=73.7

Q ss_pred             CCCCCEEEECCCCCCEEEEECCCCCCCHH--CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             35763142037776227973045321000--0100113567897776410278510223221024566686213469999
Q gi|254780970|r  434 GGDAGVIRVEGHETKALAFSSDVTPRYVK--ADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHS  511 (737)
Q Consensus       434 g~DaaVv~~~~~~~~gia~s~g~~p~~~~--~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~a  511 (737)
                      |+||||+++..  ++.+++|+|.......  .+||.+++.+++.+++||++||++|++++++++++.+.+++   ++.+.
T Consensus         1 GdDaavi~~~~--~~~lv~ttD~~~~~~~f~~~p~~~g~~av~~~~sDi~a~Ga~P~~~~~~l~~~~~~~~~---~l~~~   75 (95)
T pfam00586         1 GDDAAVIRLGE--GPALVVTTDGVVTHVHFAADPYDGGATAVAGNLSDLAAMGAKPLAFLDGLALGEGLDPE---WLEEI   75 (95)
T ss_pred             CCEEEEEEECC--CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCHH---HHHHH
T ss_conf             97059997099--98899996777888867889899999999999861997499916507989769975236---89999


Q ss_pred             HHHHHHHHHHCCCCCCCCC
Q ss_conf             9999852210288665443
Q gi|254780970|r  512 VKGIREACQILDFPIVSGN  530 (737)
Q Consensus       512 v~gl~d~c~~lgipivgGk  530 (737)
                      ++|+.++|+++|++++||+
T Consensus        76 ~~g~~~~~~~~g~~ivGGd   94 (95)
T pfam00586        76 VRGIAEAANEFGVPLVGGD   94 (95)
T ss_pred             HHHHHHHHHHHCCEEECCC
T ss_conf             9999999999299883707


No 70 
>KOG0237 consensus
Probab=99.38  E-value=1.9e-12  Score=104.34  Aligned_cols=228  Identities=22%  Similarity=0.321  Sum_probs=159.1

Q ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCC-CCCCCEEEECCCCHH
Q ss_conf             225767787436877504578756863888998887458866543087211320355215-676-642211221121135
Q gi|254780970|r  113 LRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPC-YNN-NIIVNTFAAGIAKTN  190 (737)
Q Consensus       113 iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~-y~~-~~~v~~~~~Gi~~~~  190 (737)
                      ++|+++.||+|++.+|.+..|.++.+    +...+++||+..|-+-|...+||+|.-.|+ |.. .--.+.+++|+++.+
T Consensus       523 vNDii~~gAePl~FLDYfa~gkLd~~----va~~~v~gia~gC~qa~CaLvGGETaEMP~~Y~~g~yDlaG~Avga~e~~  598 (788)
T KOG0237         523 VNDIIVQGAEPLFFLDYFATGKLDVS----VAEQVVKGIAEGCRQAGCALVGGETAEMPGMYAPGEYDLAGFAVGAVERT  598 (788)
T ss_pred             HHHHHHCCCCCEEEHHHHHHCCCCHH----HHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             11475517753002223530650417----89999999998776506512156323477888988315455167666226


Q ss_pred             HHHHCCC-CCCCCEEEEECCCCCCCCCHHHHHHH--HHHCC-CCC--CCC---CCCCCCCHHHH--HHHHHHHHHHCCCC
Q ss_conf             5431122-56897799965765644410466667--77286-533--344---43326798999--88899987401138
Q gi|254780970|r  191 AIFSSKA-RGIGLPLVYLGAKTGRDGIGGASMAS--EEFGE-NIA--KKR---PTVQVGDPFTG--KCLLEACLELMNTD  259 (737)
Q Consensus       191 ~~~~~~~-~~~Gd~ii~~G~~tg~dGi~Ga~~sS--~~~~~-~~~--~~~---~~VQ~gdp~~e--k~~~~~~~~~~~~~  259 (737)
                      .+..... ..+||.++  |-+  .+|+|-.-||-  +.+.. ...  +..   .++--||..+.  |.-...++-++.++
T Consensus       599 ~iLp~~~ei~~GDVll--GL~--SsGvHSNGfSLvrkil~~~~l~~~~~~P~~~~~tlGd~LL~pTkiYvk~ll~~i~~g  674 (788)
T KOG0237         599 DILPKLNEIVAGDVLL--GLP--SSGVHSNGFSLVRKILARSGLSYKDPLPWDSSKTLGDELLAPTKIYVKQLLPLIRKG  674 (788)
T ss_pred             CCCCCCCCCCCCCEEE--ECC--CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEHHHHHHHHHHC
T ss_conf             7577723255686799--546--666455727899999986087657889997656411444265077511427888735


Q ss_pred             CCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCC-------CC-CCHHHHHHC-CCCCEEEEEEECCCHHHHHHH
Q ss_conf             301103477520111223320147752899620220466-------78-999898617-888508999954675889998
Q gi|254780970|r  260 AVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE-------EG-MTAYEMMLS-ESQERMLMILNPEKQHKAQEI  330 (737)
Q Consensus       260 ~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~-------~~-l~~~ei~~s-EsQeR~~~~v~~~~~~~~~~i  330 (737)
                      +++++-.++.|||.-.++.+.. ..+|+.||.+.--+..       .| ++-.|+.-- -.-=-|+++|.||+.+++++-
T Consensus       675 ~vkg~AHITGGGl~ENipRvlp-~~l~~~id~~twe~p~vF~Wl~~aG~v~~~em~RTfN~GiGmVlvVs~e~ve~v~ke  753 (788)
T KOG0237         675 GVKGLAHITGGGLTENIPRVLP-DHLGAVIDADTWELPPVFKWLQQAGNVPDSEMARTFNCGIGMVLVVSPENVERVLKE  753 (788)
T ss_pred             CCCEEEEECCCCCCCCCHHHCC-CCCCEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHH
T ss_conf             5122566417872126501165-224537844434473788999873899879988773556656999868899999999


Q ss_pred             HHHHCCEEECCCCEEECCC
Q ss_conf             8870971311221210443
Q gi|254780970|r  331 LNKWGLHFSIIGITTNDKL  349 (737)
Q Consensus       331 ~~~~~~~~~~iG~vt~~~~  349 (737)
                      .++++-.+.+||+|.+...
T Consensus       754 l~~~~e~~~~iG~vv~r~~  772 (788)
T KOG0237         754 LTNHGEEAYRIGEVVNREG  772 (788)
T ss_pred             HHHCCEEEEEEEEEEECCC
T ss_conf             8527817999876763588


No 71 
>pfam00586 AIRS AIR synthase related protein, N-terminal domain. This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=99.37  E-value=1.1e-12  Score=106.05  Aligned_cols=92  Identities=40%  Similarity=0.716  Sum_probs=81.3

Q ss_pred             CCCEEEEEECCCEEEEE---EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             47736898369839999---951788777658888721055810225767787436877504578756863888998887
Q gi|254780970|r   72 GENAGVVDIGGGDCVVF---KMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVV  148 (737)
Q Consensus        72 ~~~a~vi~~~~~~~~~~---k~EtHNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~  148 (737)
                      ||||+||++.++..+++   .+.+|+|++. +||.++.+.+...+||+.+|||+|++++++|++++..+   ...+.+..
T Consensus         1 GdDaavi~~~~~~~lv~ttD~~~~~~~f~~-~p~~~g~~av~~~~sDi~a~Ga~P~~~~~~l~~~~~~~---~~~l~~~~   76 (95)
T pfam00586         1 GDDAAVIRLGEGPALVVTTDGVVTHVHFAA-DPYDGGATAVAGNLSDLAAMGAKPLAFLDGLALGEGLD---PEWLEEIV   76 (95)
T ss_pred             CCEEEEEEECCCCEEEEEECCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCC---HHHHHHHH
T ss_conf             970599970999889999677788886788-98999999999998619974999165079897699752---36899999


Q ss_pred             HHHHHHHHHCCCCCCCCEE
Q ss_conf             4588665430872113203
Q gi|254780970|r  149 AGIAGYSNSFGVPTVGGEV  167 (737)
Q Consensus       149 ~G~~~ygN~~G~P~v~G~~  167 (737)
                      +|++++++++|+|++||+|
T Consensus        77 ~g~~~~~~~~g~~ivGGdT   95 (95)
T pfam00586        77 RGIAEAANEFGVPLVGGDT   95 (95)
T ss_pred             HHHHHHHHHHCCEEECCCC
T ss_conf             9999999992998837079


No 72 
>KOG3939 consensus
Probab=99.31  E-value=2.8e-10  Score=89.43  Aligned_cols=252  Identities=19%  Similarity=0.243  Sum_probs=154.7

Q ss_pred             CCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCH-------HHHHHHCCCCCCCCCCHHHHH
Q ss_conf             7631420377762279730453210000100113567897776410278510-------223221024566686213469
Q gi|254780970|r  436 DAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKP-------LAITDNLNFGNPEKEEIMGQF  508 (737)
Q Consensus       436 DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~P-------lait~~lnf~~P~~~e~~~ql  508 (737)
                      |++|+.+.+ .+..++-|+|+.-..+ .|||.++|.|.+..++|++|||...       ++++..+  ..-+....   .
T Consensus         2 d~~viplrh-~gl~lvqttdffyp~v-ddpy~mgriacanvlsdlyamgvtecdnmlmll~vs~~~--~ekerd~v---~   74 (312)
T KOG3939           2 DCCVIPLRH-GGLLLVQTTDFFYPLV-DDPYMMGRIACANVLSDLYAMGVTECDNMLMLLSVSTSM--SEKERDVV---I   74 (312)
T ss_pred             CCEEEEECC-CCEEEEEEECEEEECC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHHHCHH---H
T ss_conf             716974046-9768998503044525-786776578998888888872532105230222441110--25653320---6


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHH
Q ss_conf             999999985221028866544320011236866676311122223-3352023310214389807513776655432678
Q gi|254780970|r  509 VHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGI-LPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMY  587 (737)
Q Consensus       509 ~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~-v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS~~  587 (737)
                      --.++|..|++.+.|+|+.||.      +   .+.|-.++++++. +--.+..+-++.+.+||.+++.+..+....--.+
T Consensus        75 pl~~~gfkdaa~e~gt~v~ggq------t---v~npw~~igGVatsVcq~ne~i~pdnAvpGdvlvLTkplg~qvAv~~h  145 (312)
T KOG3939          75 PLIIQGFKDAAEEAGTPVTGGQ------T---VINPWCIIGGVATSVCQPNEIIMPDNAVPGDVLVLTKPLGGQVAVNAH  145 (312)
T ss_pred             HHHHHHHHHHHHHCCCCEECCE------E---ECCCCEEECCCCCCCCCCCCEECCCCCCCCCEEEEECCCCCEEEHHHH
T ss_conf             8888876778973598446670------5---417403445541233374310055677776369993267752112798


Q ss_pred             HHHHHC-----CCCCCCCCCCHHHHHHHHHHHH---H-------HHHCCCEEEEEECCCCHHHHHHHHHHHCC--CCCEE
Q ss_conf             888611-----6789996479899999999999---9-------99959806994648657999999998458--97089
Q gi|254780970|r  588 SLECAS-----SNIGPPPKVDCHLEKNHGFFVL---S-------MINAKKITACHDISTGGLIITLAEMTISS--AKGMD  650 (737)
Q Consensus       588 ~~~~~~-----~~~g~~p~~d~~~~k~~~~~v~---~-------li~~g~I~S~HDiSdGGL~~aL~EMa~as--~~G~~  650 (737)
                      .....+     ...-.+++  .+.++....++.   .       |+..-.++|+.||+..||+.+---++-.-  .+-+.
T Consensus       146 ~wi~~~~ek~~~~~l~vs~--~die~ay~~a~~~M~~Lnr~aA~lmhkynaHaaTDItGFgllGHaqnLa~qqk~~v~f~  223 (312)
T KOG3939         146 QWIDNQPEKWNKLKLEVSD--EDIEKAYEEAMKSMARLNRNAAGLMHKYNAHAATDITGFGLLGHAQNLAKQQKNEVSFQ  223 (312)
T ss_pred             HHHHCCCCEEEEEEEEECH--HHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             8876175101124555258--88999999997456430446654321102232224233111345778999862463021


Q ss_pred             EE-ECCCCCCCHHHHH----H-------CCCCCCEEEEECHHHHHHHHHHHHHCCC---CEEEEEEECCC
Q ss_conf             98-0566689878887----2-------9883218999968809989999985798---49998998798
Q gi|254780970|r  651 II-LPIEIEKDPKPFL----F-------GEDQGRYVVCISPENQDLVMSEANNKNI---PLRYLGKVSGS  705 (737)
Q Consensus       651 I~-L~~~~~~d~~~~L----F-------sEs~Gr~ii~V~~~~~~~~~~~~~~~gi---~~~~IG~Vt~~  705 (737)
                      |. ||.....+....+    |       .|+.|.+++..+.++...|-+.+++...   .+..||.|+..
T Consensus       224 i~~LPiI~km~~vska~G~~f~l~qGts~ETsGGlLIclP~eqaakfcaei~s~k~gegqAWIIGiVekg  293 (312)
T KOG3939         224 IHKLPIIAKMAEVSKACGNMFKLRQGTSAETSGGLLICLPREQAAKFCAEIKSPKNGEGQAWIIGIVEKG  293 (312)
T ss_pred             ECCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEEEECC
T ss_conf             0257056658899875264200014777667785599735889999998745876688734799998548


No 73 
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141   This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP..
Probab=99.09  E-value=3.9e-11  Score=95.33  Aligned_cols=347  Identities=18%  Similarity=0.246  Sum_probs=189.0

Q ss_pred             ECCCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHH
Q ss_conf             54675889998887097131122121044310002586443443210146650114555315655510123468725588
Q gi|254780970|r  320 NPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCT  399 (737)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~v~dlp~~~L~~~~P~~~r~~~~~~~~~~~~~~~~~~~~d~~  399 (737)
                      +=+|+.-+++.++..+=.-    +.|+=+.+--||-             +.|-  |-++.  ..++...-+...-...++
T Consensus       193 ~l~DL~fiq~YFk~~~R~P----T~TEiKVlDTYWS-------------DHCR--HTTFE--T~l~~v~~~~skf~~~~~  251 (1279)
T TIGR01857       193 SLEDLKFIQDYFKEIGRNP----TITEIKVLDTYWS-------------DHCR--HTTFE--TELKEVTIEDSKFSKQLK  251 (1279)
T ss_pred             CHHHHHHHHHHHCCCCCCC----CEEEEEEECCCCC-------------CCCC--CCCCC--CEEEEEECCCCCCCHHHH
T ss_conf             2789998876612378988----6156644326657-------------8851--57544--344047648642213789


Q ss_pred             HHHHHHHHCCCCCCHHHHHHH--CCCCCCC---CCC-----CCCC--CC---------CCEE---EECCCC-CC-----E
Q ss_conf             999998507321010356531--1210001---100-----0013--57---------6314---203777-62-----2
Q gi|254780970|r  400 KSLLKLLSSPNLSSRRWVYEQ--YDTMIQS---NSI-----QLPG--GD---------AGVI---RVEGHE-TK-----A  449 (737)
Q Consensus       400 ~~l~~vL~~pnV~SK~~i~~q--yD~~V~g---~tv-----~~Pg--~D---------aaVv---~~~~~~-~~-----g  449 (737)
                      ++..+-|.     +|+.|++.  -.+.|.-   .|+     .+-|  +|         |+|-   .+++.. .+     .
T Consensus       252 ~~y~~Y~~-----~r~~l~~~nln~k~v~LMDmATI~~kylkk~G~Ld~LevSeEiNACSv~v~vdv~~~~GkkaiE~wL  326 (1279)
T TIGR01857       252 KAYEDYLA-----MREELGRENLNEKPVSLMDMATIVAKYLKKNGKLDDLEVSEEINACSVEVEVDVDGVEGKKAIEEWL  326 (1279)
T ss_pred             HHHHHHHH-----HHHHHCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHH
T ss_conf             98989999-----8876222111047862003577887876526855887511031423799999852876740243365


Q ss_pred             EEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHC-----------CCC-CHHH-HHHHCCCCCCCCCCHHHHH--H-HHHH
Q ss_conf             797304532100001001135678977764102-----------785-1022-3221024566686213469--9-9999
Q gi|254780970|r  450 LAFSSDVTPRYVKADPFEGTKQAVAECWRNIIA-----------TGA-KPLA-ITDNLNFGNPEKEEIMGQF--V-HSVK  513 (737)
Q Consensus       450 ia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a-----------~Ga-~Pla-it~~lnf~~P~~~e~~~ql--~-~av~  513 (737)
                      +-+.-.-+.+...|-|+=||+.+++.|+||=.+           +|+ +|+. |.=.+       .-++-|=  . .|..
T Consensus       327 LmFKNETHNHPTEIEPFGGAATClGGAIRDPLSGRSYVYQAmRvtGaadpt~~v~ETl-------~GKLPQ~ki~~tAA~  399 (1279)
T TIGR01857       327 LMFKNETHNHPTEIEPFGGAATCLGGAIRDPLSGRSYVYQAMRVTGAADPTVPVSETL-------KGKLPQRKITTTAAH  399 (1279)
T ss_pred             HHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHEEEEEEEECCCCCCCCHHHHC-------CCCCCCHHHHHHHCC
T ss_conf             4214577865823378874445357541377763003011001105778855401011-------588741133220113


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCEEECCCCC--CCCCHHH-HHH
Q ss_conf             9985221028866544320011236866676311122-22333520233102143898075137766--5543267-888
Q gi|254780970|r  514 GIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAG-VGILPDYSLMTRIDSAHEGDLILMIGNDG--CHLDCSM-YSL  589 (737)
Q Consensus       514 gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~-vG~v~d~~~~it~~~k~~Gd~I~liG~~~--~~LggS~-~~~  589 (737)
                      |=+-+-+  .|-+-.|-||=+=+  ..-.-.-.=+++ +|-.| ..+.++.. ..+||.|+|+|...  +..||.- -++
T Consensus       400 GYSSYGN--QIGLAT~~V~EiYH--pGY~AKRMEvGAVvAAtP-~~nV~R~~-P~~GD~iILLGGkTGRDGiGGATGSSK  473 (1279)
T TIGR01857       400 GYSSYGN--QIGLATGQVSEIYH--PGYVAKRMEVGAVVAATP-KENVVREK-PEPGDVIILLGGKTGRDGIGGATGSSK  473 (1279)
T ss_pred             CCCHHHH--HHHHHHCCEEEEEC--CCCEEEEEEECCEEEECC-CCCCEECC-CCCCCEEEEECCCCCCCCCCCCCCCCH
T ss_conf             2101222--46553161347765--785012453001445058-88735267-898878998178527775567768856


Q ss_pred             H----HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC----CCCH
Q ss_conf             8----6116789996479899999999999999959806994648657999999998458970899805666----8987
Q gi|254780970|r  590 E----CASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEI----EKDP  661 (737)
Q Consensus       590 ~----~~~~~~g~~p~~d~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~----~~d~  661 (737)
                      .    -.......+..=|.-.||+.++..+.-....+|.=|.|=..||+-+|+-|+|-    |++|||+.-|    +.|-
T Consensus       474 ~h~~eS~~~~GAEVQKGNAp~ERKiQRLFRn~~v~~LIKkcNDFGAGGVSVAiGELAd----G~~vdLn~VP~KYeGLdG  549 (1279)
T TIGR01857       474 EHTVESLELCGAEVQKGNAPEERKIQRLFRNGNVTRLIKKCNDFGAGGVSVAIGELAD----GLEVDLNKVPKKYEGLDG  549 (1279)
T ss_pred             HHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCC----CEEEECCCCCCCEECCCC
T ss_conf             6636868646860303887431111000467414556120376588732686522027----407515758742107885


Q ss_pred             HHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC-EEEE
Q ss_conf             88872988321899996880998999998579849998998798-6898
Q gi|254780970|r  662 KPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS-TLSI  709 (737)
Q Consensus       662 ~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~-~l~i  709 (737)
                      -++--||||.|+-|.|.+|++++|++.+++.++.+++|++||++ +|..
T Consensus       550 TELAISESQERMAVvv~~Ed~d~F~~~~~eENL~AtvvA~VTd~~rL~m  598 (1279)
T TIGR01857       550 TELAISESQERMAVVVSKEDVDKFLKYAEEENLEATVVATVTDKPRLVM  598 (1279)
T ss_pred             CEEEEECCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCEEE
T ss_conf             1331201455114672865657899875323852289999956997067


No 74 
>KOG3939 consensus
Probab=96.88  E-value=0.019  Score=35.80  Aligned_cols=258  Identities=20%  Similarity=0.253  Sum_probs=141.1

Q ss_pred             CEEEEEECC-CEEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCEEEE-EEEECCCCCCCCCCHHHHHHH-HHH
Q ss_conf             736898369-839999951788777658888-7210558102257677874368-775045787568638889988-874
Q gi|254780970|r   74 NAGVVDIGG-GDCVVFKMESHNHPSYIEPYQ-GAATGVGGILRDIFTMGARPVA-AMNSLRFGAIHHPKTKHLLSG-VVA  149 (737)
Q Consensus        74 ~a~vi~~~~-~~~~~~k~EtHNhPs~i~P~~-GAaTg~gG~iRDi~~~Ga~p~a-~~~~l~~g~~~~p~~~~~~~~-~~~  149 (737)
                      |.+||...- ++.++-+. --=.|--=|||= |-.++. .++-|..+||-.--- ++.-|..+.--..+.|..... +++
T Consensus         2 d~~viplrh~gl~lvqtt-dffyp~vddpy~mgriaca-nvlsdlyamgvtecdnmlmll~vs~~~~ekerd~v~pl~~~   79 (312)
T KOG3939           2 DCCVIPLRHGGLLLVQTT-DFFYPLVDDPYMMGRIACA-NVLSDLYAMGVTECDNMLMLLSVSTSMSEKERDVVIPLIIQ   79 (312)
T ss_pred             CCEEEEECCCCEEEEEEE-CEEEECCCCHHHHHHHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf             716974046976899850-3044525786776578998-88888887253210523022244111025653320688888


Q ss_pred             HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECC----CCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             5886654308721132035521567664221122112----113554311225689779996576564441046666777
Q gi|254780970|r  150 GIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGI----AKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEE  225 (737)
Q Consensus       150 G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi----~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~  225 (737)
                      |-.|...+-|.|+.||.+..+      |...  ..|+    .+.++++....+-|||.+++.+..    |---| .++.+
T Consensus        80 gfkdaa~e~gt~v~ggqtv~n------pw~~--igGVatsVcq~ne~i~pdnAvpGdvlvLTkpl----g~qvA-v~~h~  146 (312)
T KOG3939          80 GFKDAAEEAGTPVTGGQTVIN------PWCI--IGGVATSVCQPNEIIMPDNAVPGDVLVLTKPL----GGQVA-VNAHQ  146 (312)
T ss_pred             HHHHHHHHCCCCEECCEEECC------CCEE--ECCCCCCCCCCCCEECCCCCCCCCEEEEECCC----CCEEE-HHHHH
T ss_conf             767789735984466705417------4034--45541233374310055677776369993267----75211-27988


Q ss_pred             --H--CCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCC-----CCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf             --2--86533344433267989998889998740-----1138-----30110347752011122332014775289962
Q gi|254780970|r  226 --F--GENIAKKRPTVQVGDPFTGKCLLEACLEL-----MNTD-----AVIAIQDMGAAGLTCSAIEMGNQGNLGITLDL  291 (737)
Q Consensus       226 --~--~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~-----~~~~-----~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l  291 (737)
                        .  .|....-.  +-+.+.-.|+--.+++..+     ...+     -.++..|+..-||..-..-++..-.-.+.+-.
T Consensus       147 wi~~~~ek~~~~~--l~vs~~die~ay~~a~~~M~~Lnr~aA~lmhkynaHaaTDItGFgllGHaqnLa~qqk~~v~f~i  224 (312)
T KOG3939         147 WIDNQPEKWNKLK--LEVSDEDIEKAYEEAMKSMARLNRNAAGLMHKYNAHAATDITGFGLLGHAQNLAKQQKNEVSFQI  224 (312)
T ss_pred             HHHCCCCEEEEEE--EEECHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             8761751011245--55258889999999974564304466543211022322242331113457789998624630210


Q ss_pred             HHHCCCCCCCCHHHHHH-----------CCCCCEEEEEEECCCHHHHHHHHHH----HCCEEECCCCEEECCCC
Q ss_conf             02204667899989861-----------7888508999954675889998887----09713112212104431
Q gi|254780970|r  292 DKVPTCEEGMTAYEMML-----------SESQERMLMILNPEKQHKAQEILNK----WGLHFSIIGITTNDKLF  350 (737)
Q Consensus       292 ~~vp~~~~~l~~~ei~~-----------sEsQeR~~~~v~~~~~~~~~~i~~~----~~~~~~~iG~vt~~~~~  350 (737)
                      .++|+-.. |...--.|           .|+-.-.+++.+.|+..+|.+-.+.    ++ .+-+||.|+.+++-
T Consensus       225 ~~LPiI~k-m~~vska~G~~f~l~qGts~ETsGGlLIclP~eqaakfcaei~s~k~geg-qAWIIGiVekgn~t  296 (312)
T KOG3939         225 HKLPIIAK-MAEVSKACGNMFKLRQGTSAETSGGLLICLPREQAAKFCAEIKSPKNGEG-QAWIIGIVEKGNST  296 (312)
T ss_pred             CCCHHHHH-HHHHHHHCCCCCEECCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCC-CEEEEEEEECCCCC
T ss_conf             25705665-88998752642000147776677855997358899999987458766887-34799998548741


No 75 
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=84.58  E-value=0.78  Score=24.69  Aligned_cols=49  Identities=18%  Similarity=0.451  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             56789777641027851022322102456668621346999999998522102886654
Q gi|254780970|r  470 KQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVS  528 (737)
Q Consensus       470 ~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivg  528 (737)
                      ..+|-||+|    .||.-++  ...|||++.+++.+-+    +..+.+.|..+|+|++.
T Consensus        96 ~~sVeeAvr----lGAdaV~--~~v~~Gs~~E~~~l~~----l~~l~~ea~~~GlPll~  144 (266)
T PRK07226         96 VGTVEDAIK----LGADAVS--VHVNVGSETEAEMLED----LGRIARECEEWGMPLLA  144 (266)
T ss_pred             ECCHHHHHH----CCCCEEE--EEEECCCCCHHHHHHH----HHHHHHHHHHHCCCEEE
T ss_conf             214999985----5877899--9854799837999999----99999999985995699


No 76 
>PRK08227 aldolase; Validated
Probab=83.65  E-value=0.95  Score=24.11  Aligned_cols=70  Identities=11%  Similarity=0.166  Sum_probs=40.7

Q ss_pred             CEEEEECCCCCCCHHCCCH-HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             2279730453210000100-113567897776410278510223221024566686213469999999985221028866
Q gi|254780970|r  448 KALAFSSDVTPRYVKADPF-EGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPI  526 (737)
Q Consensus       448 ~gia~s~g~~p~~~~~dP~-~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipi  526 (737)
                      +++++-....+.+.. +|. ..-..+|-||+|    +||.-+++.  +|+|++.+++.+    +-+..+.+.|..+|+|+
T Consensus       102 ~~lil~~s~~t~~~~-~~~~k~lv~sVeeAvr----lGAdAVsv~--v~iGs~~E~~~l----~~lg~v~~e~~~~GmPl  170 (291)
T PRK08227        102 KPVVLRASGGNSILK-ELSNEAVAVDMEDAVR----LNVCAVAAQ--VFIGSEYETQSI----KNIIQLVDAGLRYGMPT  170 (291)
T ss_pred             CEEEEEEECCCCCCC-CCCCCEEEECHHHHHH----CCCCEEEEE--EECCCCHHHHHH----HHHHHHHHHHHHCCCCE
T ss_conf             407999806876667-8788755534999986----799789998--635993289999----99999999999829987


Q ss_pred             CC
Q ss_conf             54
Q gi|254780970|r  527 VS  528 (737)
Q Consensus       527 vg  528 (737)
                      +.
T Consensus       171 la  172 (291)
T PRK08227        171 MA  172 (291)
T ss_pred             EE
T ss_conf             99


No 77 
>TIGR02033 D-hydantoinase dihydropyrimidinase; InterPro: IPR011778    This entry represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme ..
Probab=82.31  E-value=0.94  Score=24.13  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=17.0

Q ss_pred             CCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHH
Q ss_conf             0135763142037776227973045321000010011
Q gi|254780970|r  432 LPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEG  468 (737)
Q Consensus       432 ~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~g  468 (737)
                      .|||||=++-.+.+..  -+++....-..+..+||+|
T Consensus       397 ~~GSDADivi~DP~~~--~~I~~~~~h~~~dY~pfEG  431 (466)
T TIGR02033       397 AVGSDADIVIWDPRRS--TVISAETHHDNADYTPFEG  431 (466)
T ss_pred             CCCCCCCEEEECCCCC--EEHHHHHHHHHCCCCCCCC
T ss_conf             0246735689889964--5302366653148860257


No 78 
>TIGR00608 radc DNA repair protein RadC; InterPro: IPR001405 RadC is a DNA repair protein found in many bacteria. They share a region of similarity at the C-terminus that contains two perfectly conserved histidine residues.; GO: 0006281 DNA repair.
Probab=77.74  E-value=0.83  Score=24.50  Aligned_cols=25  Identities=8%  Similarity=0.013  Sum_probs=10.8

Q ss_pred             HHHHHHHHCCCCCCEEEEEHHHCCCCC
Q ss_conf             112233201477528996202204667
Q gi|254780970|r  273 TCSAIEMGNQGNLGITLDLDKVPTCEE  299 (737)
Q Consensus       273 ~~a~~Ema~~~~~G~~i~l~~vp~~~~  299 (737)
                      .-|+.||+.+-- +.+ .+.+.+++.|
T Consensus        79 lka~~El~~R~~-~~~-~~~~~~i~sP  103 (223)
T TIGR00608        79 LKAIVELAKRYA-KSR-MLERPVIRSP  103 (223)
T ss_pred             HHHHHHHHHHHH-CCC-CCCCCCCCCH
T ss_conf             999999986775-244-2146664898


No 79 
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR; InterPro: IPR010211   SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulphur cluster activates SoxR. The physiological role in Escherichia coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In Escherichia coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0005506 iron ion binding, 0006118 electron transport, 0006355 regulation of transcription DNA-dependent, 0006979 response to oxidative stress.
Probab=74.43  E-value=5.1  Score=19.09  Aligned_cols=44  Identities=20%  Similarity=0.356  Sum_probs=25.6

Q ss_pred             HHHHHCCCCHHHHHHHHHHH--CCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             89986199989999999995--789718899998533001107445
Q gi|254780970|r    9 EILTAHGLTKDECDQIIHIL--KRQPTLTEIGIISAMWNEHCSYKS   52 (737)
Q Consensus         9 e~~~~~gL~~~e~~~i~~~l--~R~Pt~~El~~~~~~wSEHC~~k~   52 (737)
                      ++....||+.+|+-.=.-.|  +|-||.-++.=+|+.|-|-=-|++
T Consensus        51 k~AQ~vGipL~~I~~ALa~LP~grtPt~~DW~rlS~~W~~~LdeRI   96 (142)
T TIGR01950        51 KVAQRVGIPLAEIAEALAELPEGRTPTADDWARLSSQWKEELDERI   96 (142)
T ss_pred             HHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             3233258988899999973468899888889999885018889999


No 80 
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II  (metal dependent) aldolase subfamilies.
Probab=71.17  E-value=4.5  Score=19.47  Aligned_cols=56  Identities=16%  Similarity=0.291  Sum_probs=36.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             100113567897776410278510223221024566686213469999999985221028866544
Q gi|254780970|r  464 DPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       464 dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +++..-...|.||+|    .||.-++  ..+|||++.+.+.    .+-+..+.+.|..+|+|++.=
T Consensus        73 ~~~~~l~~sVeeAvr----lGAdaV~--~~v~~Gs~~E~~~----l~~l~~v~~ea~~~G~Pll~~  128 (235)
T cd00958          73 DNDKVLVASVEDAVR----LGADAVG--VTVYVGSEEEREM----LEELARVAAEAHKYGLPLIAW  128 (235)
T ss_pred             CCHHHHHCCHHHHHH----CCCCEEE--EEEECCCCHHHHH----HHHHHHHHHHHHHHCCCEEEE
T ss_conf             517766516999983----5556799--9986898168999----999999999999839978999


No 81 
>TIGR02479 FliA_WhiG RNA polymerase sigma factor, FliA/WhiG family; InterPro: IPR012845   The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes.   With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , .     Most members of this family are the flagellar operon sigma factor FliA, controlling transcription of bacterial flagellar genes by RNA polymerase. An exception is the sigma factor WhiG in the genus Streptomyces, involved in the production of sporulating aerial mycelium.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0045449 regulation of transcription.
Probab=70.95  E-value=4.4  Score=19.55  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             80998999998579849998998
Q gi|254780970|r  680 ENQDLVMSEANNKNIPLRYLGKV  702 (737)
Q Consensus       680 ~~~~~~~~~~~~~gi~~~~IG~V  702 (737)
                      ++...+++..=..++....||+|
T Consensus       181 eRE~LVl~LYY~eELnLKEIg~V  203 (227)
T TIGR02479       181 EREKLVLSLYYYEELNLKEIGEV  203 (227)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             55788888864127668899988


No 82 
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein; InterPro: IPR013456   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This entry represents the D-xylose ABC transporter substrate-binding protein which is a periplasmic (when in Gram-negative bacteria) binding protein for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter..
Probab=70.66  E-value=7.2  Score=18.08  Aligned_cols=129  Identities=17%  Similarity=0.219  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCC--CH
Q ss_conf             88998887458866543087211320355215-6766422112211211355431122568977999657656444--10
Q gi|254780970|r  141 KHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPC-YNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDG--IG  217 (737)
Q Consensus       141 ~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~-y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~tg~dG--i~  217 (737)
                      -..+..++.-+.    +-|+|+++-+--..+. ..-...-.=.-||-+....+....+  .|+.+++=|+||+.--  +-
T Consensus        65 ~~vl~~~~~~A~----~~GI~V~aYDRLI~~aD~~fY~sFDN~~VG~~QA~a~l~~~P--~GnY~l~~GsP~D~NA~~lR  138 (307)
T TIGR02634        65 GEVLSNAVQEAK----KEGIKVLAYDRLIEDADIDFYLSFDNEKVGEMQAKAVLAAAP--KGNYFLLGGSPTDNNAKLLR  138 (307)
T ss_pred             CHHHHHHHHHHH----HCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHH
T ss_conf             603788999998----779808873011133552002230435788898888863167--87578841778972279988


Q ss_pred             HHHHHHHHHCCCCCCCCCCCC-CCC-------HHHHHHHHHHHHHHCCCCC--CHHCCCCCCCCHHHHHHHH
Q ss_conf             466667772865333444332-679-------8999888999874011383--0110347752011122332
Q gi|254780970|r  218 GASMASEEFGENIAKKRPTVQ-VGD-------PFTGKCLLEACLELMNTDA--VIAIQDMGAAGLTCSAIEM  279 (737)
Q Consensus       218 Ga~~sS~~~~~~~~~~~~~VQ-~gd-------p~~ek~~~~~~~~~~~~~~--i~~~~D~gaGGl~~a~~Em  279 (737)
                      .+-+  +.|.-...  ..-|. +|+       |....+.+|-.|.+.+++.  |++-.|-+|||...|+.==
T Consensus       139 ~GQ~--~VL~~~id--~G~ikivG~~wvd~Wlp~~A~~~~E~~LTan~N~~D~vVASNDaTAGGai~AL~AQ  206 (307)
T TIGR02634       139 EGQM--KVLQPAID--SGDIKIVGDQWVDGWLPENALKIMENALTANDNKVDAVVASNDATAGGAIQALSAQ  206 (307)
T ss_pred             HHHH--HHHHHHHC--CCCEEEECCHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHC
T ss_conf             6568--88656431--68748961322032256889999998851026860169863877634799998616


No 83 
>TIGR01034 metK S-adenosylmethionine synthetase; InterPro: IPR002133   S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP . AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis.   In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family.   The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance .; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon compound metabolic process.
Probab=68.89  E-value=7.2  Score=18.08  Aligned_cols=101  Identities=20%  Similarity=0.283  Sum_probs=61.4

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCC--CCCCCC-CCCCCCCEEE--ECCCCCCE------EEEECCCCCCC
Q ss_conf             6872558899999850732101035653112100--011000-0135763142--03777622------79730453210
Q gi|254780970|r  392 LCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMI--QSNSIQ-LPGGDAGVIR--VEGHETKA------LAFSSDVTPRY  460 (737)
Q Consensus       392 ~~~~~d~~~~l~~vL~~pnV~SK~~i~~qyD~~V--~g~tv~-~Pg~DaaVv~--~~~~~~~g------ia~s~g~~p~~  460 (737)
                      ..+..+|++++.+=.=.|.|..++|+-+.--..|  +|+=|+ +|.+|++++=  +--+++=|      -|+| |=.|-+
T Consensus       201 ~iS~~~Lr~~i~E~iI~p~lp~~~~ld~~t~~~iNPtGrFViGGP~gDtGLTGRKIIVDTYGG~~~HGGGAFS-GKDpsK  279 (393)
T TIGR01034       201 DISQKELREAIIEEIIKPVLPDAEYLDEKTKFFINPTGRFVIGGPMGDTGLTGRKIIVDTYGGWARHGGGAFS-GKDPSK  279 (393)
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEECCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCC
T ss_conf             5477999999875112224385200566886888798315746866577888775888677886467886455-788874


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHCCCC
Q ss_conf             0001001135678977764102785-102232210245
Q gi|254780970|r  461 VKADPFEGTKQAVAECWRNIIATGA-KPLAITDNLNFG  497 (737)
Q Consensus       461 ~~~dP~~ga~~AV~Eal~Nl~a~Ga-~Plait~~lnf~  497 (737)
                      ++.+..-+||| ||   -||+|+|. +..-+..++.+|
T Consensus       280 VDRSAAY~ARy-iA---Kn~VAaGlA~r~~vQlsYAIG  313 (393)
T TIGR01034       280 VDRSAAYAARY-IA---KNIVAAGLADRCEVQLSYAIG  313 (393)
T ss_pred             CCHHHHHHHHH-HH---HHHHHHHHHCEEEEEEEEEEC
T ss_conf             55038899999-99---875252000231234543312


No 84 
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type; InterPro: IPR011839    Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from the pullulanases of Gram-positive bacteria (IPR011838 from INTERPRO).; GO: 0051060 pullulanase activity, 0005975 carbohydrate metabolic process.
Probab=67.99  E-value=6.3  Score=18.46  Aligned_cols=48  Identities=25%  Similarity=0.436  Sum_probs=30.3

Q ss_pred             CHHHHHHHCCCC---------------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             102232210245---------------66686213469999999985221028866544320011236
Q gi|254780970|r  486 KPLAITDNLNFG---------------NPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETN  538 (737)
Q Consensus       486 ~Plait~~lnf~---------------~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~  538 (737)
                      +++.-+|++|||               +|+-+++--+|+++|+++..-   +|+-||=  |--||+|+
T Consensus       390 ~~v~~~DsyNWGYDPfHy~VPEGSYatdP~G~~Ri~EFR~MVqa~~~~---~GL~Vvm--DVVYNHTn  452 (945)
T TIGR02103       390 NEVRDLDSYNWGYDPFHYTVPEGSYATDPEGPKRIKEFREMVQALNKD---TGLNVVM--DVVYNHTN  452 (945)
T ss_pred             HHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCEEEE--EEEECHHH
T ss_conf             998852677757787001466755575968550267777899998662---5883888--52000011


No 85 
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=65.32  E-value=7.4  Score=18.01  Aligned_cols=10  Identities=20%  Similarity=0.258  Sum_probs=3.5

Q ss_pred             CCCCCHHHHH
Q ss_conf             2785102232
Q gi|254780970|r  482 ATGAKPLAIT  491 (737)
Q Consensus       482 a~Ga~Plait  491 (737)
                      |.|+.+-++.
T Consensus        11 CrgGd~raLa   20 (153)
T COG4008          11 CRGGDFRALA   20 (153)
T ss_pred             HCCCCCCCEE
T ss_conf             2589810232


No 86 
>PRK06108 aspartate aminotransferase; Provisional
Probab=65.27  E-value=6.5  Score=18.37  Aligned_cols=32  Identities=16%  Similarity=0.156  Sum_probs=19.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      ||.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       166 ~P~NPtG~v~s~e~l~~l~~la~~~~v~iisD  197 (382)
T PRK06108        166 SPNNPTGWTASRDDQQAILAHCRRHGLWIVAD  197 (382)
T ss_pred             CCCCCCCHHCCHHHHHHHHHHHHCCCCEEECH
T ss_conf             99699662044788999999876269753533


No 87 
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731    Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=62.06  E-value=4.7  Score=19.34  Aligned_cols=43  Identities=23%  Similarity=0.384  Sum_probs=26.2

Q ss_pred             CCCCCHHHHHHHHHCCCCCCE--EEEEHHHCCCCCCCCHHHHHHCCCC
Q ss_conf             775201112233201477528--9962022046678999898617888
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGI--TLDLDKVPTCEEGMTAYEMMLSESQ  312 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~--~i~l~~vp~~~~~l~~~ei~~sEsQ  312 (737)
                      +|+|||.++..++...+|+|=  -||-|.|.+  .+|. ..+++.|++
T Consensus        27 iGaGgLGs~~~~~LA~AGVG~i~i~D~D~V~~--SNLq-RQ~Lf~e~D   71 (210)
T TIGR02356        27 IGAGGLGSPAALYLAAAGVGTITIVDDDHVDL--SNLQ-RQILFAEED   71 (210)
T ss_pred             EEECHHHHHHHHHHHHCCCCEEEEEECCEECH--HHCH-HHHHHCHHH
T ss_conf             97261456899999828883789985167701--0120-554303244


No 88 
>PRK08175 aminotransferase; Validated
Probab=61.92  E-value=6.3  Score=18.47  Aligned_cols=31  Identities=10%  Similarity=0.105  Sum_probs=17.9

Q ss_pred             CCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             6668621-3469999999985221028866544
Q gi|254780970|r  498 NPEKEEI-MGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~-~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|-. .|. .+-++.+.+.|++.++.+++-
T Consensus       172 ~P~NPTG~v~s-~e~l~~i~~~a~~~~i~visD  203 (395)
T PRK08175        172 FPSNPTAQCVE-LEFFEKVVALAKRYDVLVVHD  203 (395)
T ss_pred             CCCCCCCCCCC-HHHHHHHHHHHHHCCEEEEEC
T ss_conf             99998887579-999999999888669489823


No 89 
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=61.56  E-value=8.1  Score=17.74  Aligned_cols=44  Identities=16%  Similarity=0.191  Sum_probs=22.5

Q ss_pred             CCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCC
Q ss_conf             775201112233201477528996202204667899989861788
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSES  311 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEs  311 (737)
                      +|+|||.|.+.+...++|+|--.=.|.=.+...+|. ..++.+++
T Consensus        48 vG~GGLG~~~~~yLaaaGvG~i~ivD~D~v~~sNL~-RQil~~~~   91 (392)
T PRK07878         48 IGAGGLGSPTLLYLAAAGVGTIGIVEFDVVDESNLQ-RQIIHGQS   91 (392)
T ss_pred             ECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCCCCCHH
T ss_conf             878757899999999828975999878996745577-20056843


No 90 
>PRK07367 consensus
Probab=61.35  E-value=3.5  Score=20.20  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=15.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       169 ~P~NPTG~v~s~~~l~~l~~~a~~~~~~iIsD  200 (385)
T PRK07367        169 SPSNPTGMVYTPEEIAALAEVIVEHDLYVVSD  200 (385)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEC
T ss_conf             99798785665788889988887558699711


No 91 
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210   This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=58.52  E-value=4.9  Score=19.23  Aligned_cols=51  Identities=16%  Similarity=0.341  Sum_probs=34.9

Q ss_pred             HHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             410278510223221024566686213469999999985221028866544320011236
Q gi|254780970|r  479 NIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETN  538 (737)
Q Consensus       479 Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~  538 (737)
                      +-+.+||.-++  ...|.|+-+++|.+    +.+--+++.|..||+|++.-   ||-...
T Consensus        98 ~Ai~~GADAVS--~HvNvGs~~e~d~~----~~lg~vA~~ad~~GvPlLAM---mYaRG~  148 (259)
T TIGR01949        98 DAIRLGADAVS--IHVNVGSDTEADQI----EDLGDVAEIADDWGVPLLAM---MYARGP  148 (259)
T ss_pred             HHHHCCCCEEE--EEEECCCCCCHHHH----HHHHHHHHHHHHCCCCHHEC---CCCCCC
T ss_conf             99732898679--98864898738999----99989999886548842011---278868


No 92 
>pfam07141 Phage_term_sma Putative bacteriophage terminase small subunit. This family consists of several putative Lactococcus bacteriophage terminase small subunit proteins. The exact function of this family is unknown.
Probab=58.39  E-value=6.4  Score=18.43  Aligned_cols=30  Identities=37%  Similarity=0.451  Sum_probs=15.2

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             99999578971889999853300110744588999
Q gi|254780970|r   23 QIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWL   57 (737)
Q Consensus        23 ~i~~~l~R~Pt~~El~~~~~~wSEHC~~k~~~~~l   57 (737)
                      .|.+.+.--.||-|+.     -|=||+-|+||+|-
T Consensus        23 qiidkiesgcndreiy-----tslhcsaktfrkwr   52 (174)
T pfam07141        23 QIIDKIESGCNDREIY-----TSLHCSAKTFRKWR   52 (174)
T ss_pred             HHHHHHHCCCCHHHHH-----HHHCCCHHHHHHHH
T ss_conf             9999997488514545-----54201478888763


No 93 
>PRK07550 hypothetical protein; Provisional
Probab=56.63  E-value=3.5  Score=20.22  Aligned_cols=37  Identities=5%  Similarity=0.098  Sum_probs=20.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             666862134699999999852210288665443200112
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNE  536 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~  536 (737)
                      +|.+|-..---.+-++.+.+.|++.++.|++-  -.|.+
T Consensus       172 ~P~NPtG~v~s~e~l~~l~~la~~~~~~iI~D--EiY~~  208 (387)
T PRK07550        172 TPNNPTGVVYPPELLHELYDLARRRGLALILD--ETYRD  208 (387)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEC--CCHHH
T ss_conf             99699885107798534654303315899941--75787


No 94 
>PRK07568 aspartate aminotransferase; Provisional
Probab=56.55  E-value=4.1  Score=19.78  Aligned_cols=94  Identities=19%  Similarity=0.116  Sum_probs=39.0

Q ss_pred             CCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             00013576314203777622797304532100001001135678977764102785102232210245666862134699
Q gi|254780970|r  430 IQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFV  509 (737)
Q Consensus       430 v~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~  509 (737)
                      +..||+...|..+.+......+-..|.++.....+|..+-..--.+.+.+.+.-..  -++.    +.+|.+|...---.
T Consensus       108 l~~pGD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~e~g~~lp~~~~l~~~~~~~t--k~ii----~~~P~NPTG~v~s~  181 (396)
T PRK07568        108 ICDPGDEIIVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPKKEEIEKLITDKT--KAIL----ISNPGNPTGVVYTK  181 (396)
T ss_pred             HCCCCCEEEEECCCCCCHHHHHHHCCCEEEECCCCHHHCCCCCCHHHHHHHCCCCC--EEEE----ECCCCCCCCCCCCH
T ss_conf             27998989993897532599999849878516767211887896999997477657--4998----58992988754015


Q ss_pred             HHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999985221028866544
Q gi|254780970|r  510 HSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       510 ~av~gl~d~c~~lgipivgG  529 (737)
                      +-.+.+.+.|++.++.|+.-
T Consensus       182 ~~~~~l~~la~~~~~~ii~D  201 (396)
T PRK07568        182 EELRQLADIAKEHDLFLISD  201 (396)
T ss_pred             HHHHHHHHHHHHHCEEEECC
T ss_conf             78999999998710667424


No 95 
>pfam04539 Sigma70_r3 Sigma-70 region 3. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but as some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme.
Probab=56.09  E-value=10  Score=17.07  Aligned_cols=21  Identities=29%  Similarity=0.289  Sum_probs=15.5

Q ss_pred             HHHHHHHCCCCCHHHHHHHHH
Q ss_conf             999999578971889999853
Q gi|254780970|r   22 DQIIHILKRQPTLTEIGIISA   42 (737)
Q Consensus        22 ~~i~~~l~R~Pt~~El~~~~~   42 (737)
                      ..+...|||+||+.|+.-.-.
T Consensus        11 ~~L~q~lgR~Pt~eEiA~~l~   31 (78)
T pfam04539        11 RELEQELGREPTPEEIAEELG   31 (78)
T ss_pred             HHHHHHHCCCCCHHHHHHHHC
T ss_conf             999999888999999999969


No 96 
>PRK07212 consensus
Probab=55.46  E-value=6.5  Score=18.40  Aligned_cols=92  Identities=13%  Similarity=0.066  Sum_probs=41.1

Q ss_pred             CCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             00013576314203777622797304532100001001135678977764102785102232210245666862134699
Q gi|254780970|r  430 IQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFV  509 (737)
Q Consensus       430 v~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~  509 (737)
                      +..||+-..|..+.+......+-..|..+..+..++..+-.-   +.+...+.-.  .-.+.    +.+|.+|-..---.
T Consensus       111 l~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~vpl~~~~~~~~---~~l~~~i~~~--~k~i~----l~~P~NPtG~v~s~  181 (378)
T PRK07212        111 VLDDGDEVILLDPAWVSYEACIKFAGGKPVWVPLNPEDFQLP---DDLAEAITDK--TKLIV----VNSPSNPTGAVFGK  181 (378)
T ss_pred             HCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCH---HHHHHHCCCC--CEEEE----ECCCCCCCCCCCCC
T ss_conf             479989899817963425689997199699983555678528---9999856657--82999----88997998988471


Q ss_pred             HHHHHHHHHHHHCCCCCCCCC
Q ss_conf             999999852210288665443
Q gi|254780970|r  510 HSVKGIREACQILDFPIVSGN  530 (737)
Q Consensus       510 ~av~gl~d~c~~lgipivgGk  530 (737)
                      +-++.+.+.|++.++.|++-.
T Consensus       182 ~~l~~l~~la~~~~~~ii~DE  202 (378)
T PRK07212        182 ESLQGVADLAVDHDLYVLSDE  202 (378)
T ss_pred             HHHHHHHHHHHHHCCEECCCC
T ss_conf             768899997774245013300


No 97 
>TIGR02885 spore_sigF RNA polymerase sigma-F factor; InterPro: IPR014236   The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes.   With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , .    Members of this entry represent RNA polymerase sigma factor F. Within the Firmicutes, Sigma-F is specifically, and universally, a component of the endospore formation program, and is expressed in the forespore to turn on the expression of dozens of genes. It is closely related to sigma-G, which is also expressed in the forespore.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=55.13  E-value=10  Score=17.00  Aligned_cols=22  Identities=23%  Similarity=0.163  Sum_probs=9.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             686213469999999985221028
Q gi|254780970|r  500 EKEEIMGQFVHSVKGIREACQILD  523 (737)
Q Consensus       500 ~~~e~~~ql~~av~gl~d~c~~lg  523 (737)
                      .++|.++|.  .|-|+-.|-..|+
T Consensus        36 Ye~eDlFQI--GciGLvKAidkFD   57 (231)
T TIGR02885        36 YEYEDLFQI--GCIGLVKAIDKFD   57 (231)
T ss_pred             CCCCHHHHH--HHHHHHHHHHHCC
T ss_conf             870000222--1155666554217


No 98 
>TIGR01833 HMG-CoA-S_euk hydroxymethylglutaryl-CoA synthase; InterPro: IPR010122   Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase.    Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA .   HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria . In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi . In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes , .   This entry is specific for eukaryotic HMG-CoA synthase enzymes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process.
Probab=54.10  E-value=11  Score=16.77  Aligned_cols=69  Identities=12%  Similarity=0.248  Sum_probs=43.9

Q ss_pred             CCEEEEEHHHCCCCCCCCHHH------HHHCCCCCEEEEEEECCCHH-----HHHHHHHHHCCEEECCCCEEECCCCCCC
Q ss_conf             528996202204667899989------86178885089999546758-----8999888709713112212104431000
Q gi|254780970|r  285 LGITLDLDKVPTCEEGMTAYE------MMLSESQERMLMILNPEKQH-----KAQEILNKWGLHFSIIGITTNDKLFRVI  353 (737)
Q Consensus       285 ~G~~i~l~~vp~~~~~l~~~e------i~~sEsQeR~~~~v~~~~~~-----~~~~i~~~~~~~~~~iG~vt~~~~~~v~  353 (737)
                      +|++|....--+.+..|..+.      .-+.=.|.||.++-+.||+.     .+.++++|+.+++..||+.        .
T Consensus         8 ~al~~yfP~~yV~Q~~LE~yDgVs~GKYTiGLGq~~mgFc~drEDI~Sl~LTvv~~L~er~~id~~~IGRL--------E   79 (461)
T TIGR01833         8 LALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSKLMERYQIDYNKIGRL--------E   79 (461)
T ss_pred             EEEEEECCCCCCCHHHHHHHCCCCCCCEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEE--------E
T ss_conf             88886368875265778632688889503423566200002210156665899999998607871543110--------1


Q ss_pred             CCCCCCCC
Q ss_conf             25864434
Q gi|254780970|r  354 HRGEEVAN  361 (737)
Q Consensus       354 ~~g~~v~d  361 (737)
                      =+-|+|+|
T Consensus        80 VGTETiiD   87 (461)
T TIGR01833        80 VGTETIID   87 (461)
T ss_pred             CCCEEEEE
T ss_conf             04253410


No 99 
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=53.97  E-value=11  Score=16.87  Aligned_cols=18  Identities=17%  Similarity=0.239  Sum_probs=8.6

Q ss_pred             CCHHHHHHHHHHHHHHHH
Q ss_conf             100113567897776410
Q gi|254780970|r  464 DPFEGTKQAVAECWRNII  481 (737)
Q Consensus       464 dP~~ga~~AV~Eal~Nl~  481 (737)
                      +|+.-+.-.|.+++++.+
T Consensus       109 ~p~~~G~~gvl~aY~~~l  126 (254)
T cd01459         109 SPECQGFEGVLRAYREAL  126 (254)
T ss_pred             CCCCCCHHHHHHHHHHHC
T ss_conf             996559999999999860


No 100
>PRK06852 aldolase; Validated
Probab=53.88  E-value=7.2  Score=18.09  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             01001135678977764102--7851022322102456668621346999999998522102886654
Q gi|254780970|r  463 ADPFEGTKQAVAECWRNIIA--TGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVS  528 (737)
Q Consensus       463 ~dP~~ga~~AV~Eal~Nl~a--~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivg  528 (737)
                      .||+.....+|..+++=-.+  +|+  .++....+|||+...+.+-+    +..+.+-|+++|+|+|-
T Consensus       111 ~dp~s~~~~sv~~a~~~~~~~~LGa--~aVG~TIY~GSe~e~~ml~e----~~~i~~eA~~~Gl~~Vl  172 (303)
T PRK06852        111 KDPFSNQWLDVDQVVEFKKNSGLNI--LGVGYTIYLGSEYEAEMLSE----AAQIIYEAHKHGLVAVL  172 (303)
T ss_pred             CCCCHHCCCCHHHHHHHHHHCCCCC--EEEEEEEECCCHHHHHHHHH----HHHHHHHHHHCCCEEEE
T ss_conf             7840101067999986523115886--59999985797406999999----99999999976990899


No 101
>PRK09148 aminotransferase; Validated
Probab=53.73  E-value=6.2  Score=18.51  Aligned_cols=19  Identities=21%  Similarity=0.085  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHCCCCCCCC
Q ss_conf             9999985221028866544
Q gi|254780970|r  511 SVKGIREACQILDFPIVSG  529 (737)
Q Consensus       511 av~gl~d~c~~lgipivgG  529 (737)
                      -++.+.+.|++.++.|++-
T Consensus       187 ~l~~l~~~a~~~~i~visD  205 (406)
T PRK09148        187 FYKDLVAFAKKHDIWILSD  205 (406)
T ss_pred             HHHHHHHHHHCCEEEEECC
T ss_conf             9999998754054899634


No 102
>PRK05957 aspartate aminotransferase; Provisional
Probab=53.45  E-value=11  Score=16.70  Aligned_cols=32  Identities=9%  Similarity=0.109  Sum_probs=21.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       168 ~P~NPTG~v~s~~~l~~l~~la~~~~~~ii~D  199 (389)
T PRK05957        168 SPNNPTGVVYPEALLRAVNQICAEHGIYHISD  199 (389)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
T ss_conf             99899898876778999998760678189989


No 103
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein; InterPro: IPR011903   Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system .    Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond.   Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed  that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro.    This entry of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different..
Probab=53.17  E-value=4.1  Score=19.78  Aligned_cols=65  Identities=20%  Similarity=0.318  Sum_probs=35.9

Q ss_pred             CCHHHHHHHHHH-HCCCCCHHHHHHHHHHH------CCCCCC-CCCHHHHHHHHHCCCCEEECCCCCEEEEEE
Q ss_conf             998999999999-57897188999985330------011074-458899975120697489933477368983
Q gi|254780970|r   16 LTKDECDQIIHI-LKRQPTLTEIGIISAMW------NEHCSY-KSSKKWLRTLPTTGKHVIQGPGENAGVVDI   80 (737)
Q Consensus        16 L~~~e~~~i~~~-l~R~Pt~~El~~~~~~w------SEHC~~-k~~~~~l~~~~~~~~~vi~~~~~~a~vi~~   80 (737)
                      |++++-++|++. ++--=++|++.+|.+.-      -+||.| +....+|+.+-+-.+.-.-++.=.=-|+++
T Consensus         1 ls~~~~~~lke~f~k~lknpV~~~vF~~~~~liaPGk~~C~yC~~t~qLl~e~~e~~p~~~gg~KL~L~iyd~   73 (237)
T TIGR02187         1 LSEEDREILKEEFLKELKNPVELVVFTDNDTLIAPGKERCQYCKETKQLLEELSEVSPEASGGDKLKLEIYDF   73 (237)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf             9868999999998863589817999704751244798888655899999998875166446896225888627


No 104
>pfam04227 Indigoidine_A Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown.
Probab=51.89  E-value=8.7  Score=17.51  Aligned_cols=15  Identities=27%  Similarity=0.273  Sum_probs=7.0

Q ss_pred             CHHHHHHHHHHHCCE
Q ss_conf             758899988870971
Q gi|254780970|r  323 KQHKAQEILNKWGLH  337 (737)
Q Consensus       323 ~~~~~~~i~~~~~~~  337 (737)
                      |+.+-.+.++-.+++
T Consensus       156 Di~~TlE~LET~GV~  170 (293)
T pfam04227       156 DIPKTLEYLETQGVP  170 (293)
T ss_pred             CCHHHHHHHHHCCCE
T ss_conf             544689999975943


No 105
>COG5616 Predicted integral membrane protein [Function unknown]
Probab=51.63  E-value=14  Score=16.12  Aligned_cols=121  Identities=12%  Similarity=0.199  Sum_probs=63.4

Q ss_pred             CCCCCCCCCCCCCCCCCCEE-EEEEEECCCCCCCCCCHHHHHHHHHHHH-HHHHHHCCCCCCCCEEEEECCCCCCCCCCE
Q ss_conf             72105581022576778743-6877504578756863888998887458-866543087211320355215676642211
Q gi|254780970|r  104 GAATGVGGILRDIFTMGARP-VAAMNSLRFGAIHHPKTKHLLSGVVAGI-AGYSNSFGVPTVGGEVEFLPCYNNNIIVNT  181 (737)
Q Consensus       104 GAaTg~gG~iRDi~~~Ga~p-~a~~~~l~~g~~~~p~~~~~~~~~~~G~-~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~  181 (737)
                      .+++++.+.........++| ||.|---|.+  .+|+..|+-+|+.+.| .+....-+..+|..++.|  .|.+++.- +
T Consensus         6 ~~~~~~~~~~~~~~~~p~~psiAVlPF~nls--~dp~q~~faDGlTEdiIt~Lsr~~~l~VIArnssf--t~kgka~d-v   80 (152)
T COG5616           6 FVESTTESLTAPGTSIPAKPSIAVLPFVNLS--GDPEQEYFADGLTEDIITDLSRFRELFVIARNSSF--TYKGKAVD-V   80 (152)
T ss_pred             CCCCCHHHCCCCCCCCCCCCCEEEECCCCCC--CCHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCEE--ECCCCCCC-H
T ss_conf             4655502203799888998847996403578--88767565055308899876651685699756504--31688878-7


Q ss_pred             EEECC-CCHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             22112-113554311225689779996576564441046666777286533
Q gi|254780970|r  182 FAAGI-AKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIA  231 (737)
Q Consensus       182 ~~~Gi-~~~~~~~~~~~~~~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~  231 (737)
                      --+|- ....-+......+.|+.|.+..--  -|.-.|+..=++.++....
T Consensus        81 ~~v~~~Lgv~YvleGsvRr~g~RvRvtaqL--vda~~G~~LWAeryDr~l~  129 (152)
T COG5616          81 REVGEELGVRYVLEGSVRRAGGRVRVTAQL--VDASSGGHLWAERYDRDLD  129 (152)
T ss_pred             HHHHHHHCCCEEEEEEEEECCCEEEEEEEE--EECCCCCCCCHHHCCCCHH
T ss_conf             898887388689960576328879999999--7346884615777084578


No 106
>TIGR02978 phageshock_pspC phage shock protein C; InterPro: IPR014320   All members of this protein are the phage shock protein PspC. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor; PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin over expression, ethanol, heat shock and protein export defects..
Probab=51.40  E-value=4.7  Score=19.34  Aligned_cols=19  Identities=47%  Similarity=0.746  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9988874588665430872113
Q gi|254780970|r  143 LLSGVVAGIAGYSNSFGVPTVG  164 (737)
Q Consensus       143 ~~~~~~~G~~~ygN~~G~P~v~  164 (737)
                      -+.||.+|+|+|   ||+|+.-
T Consensus        12 Ki~GVCAGlA~Y---fg~ev~L   30 (128)
T TIGR02978        12 KIAGVCAGLAEY---FGVEVWL   30 (128)
T ss_pred             EEECHHHHHHHH---HCCCHHH
T ss_conf             051224577766---2786888


No 107
>PRK06056 consensus
Probab=51.21  E-value=8.1  Score=17.74  Aligned_cols=32  Identities=13%  Similarity=0.017  Sum_probs=16.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       176 ~P~NPtG~v~s~e~l~~l~~la~~~~i~ii~D  207 (402)
T PRK06056        176 SPSNPTGAVYSPEQVRAIGRWAAEHGIWVISD  207 (402)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCEECC
T ss_conf             89798888742788999999999714615510


No 108
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=50.70  E-value=16  Score=15.72  Aligned_cols=82  Identities=13%  Similarity=0.135  Sum_probs=47.9

Q ss_pred             CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHH-HHHHHHHHHHHHHHCCC
Q ss_conf             76227973045321000010011356789777641027851022322102456668621346-99999999852210288
Q gi|254780970|r  446 ETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQ-FVHSVKGIREACQILDF  524 (737)
Q Consensus       446 ~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~q-l~~av~gl~d~c~~lgi  524 (737)
                      .+.|+.++.+-. -|-..+|.+-..+-..-+++.+-.+|++-+.+..   |-+|+.++...+ -..-|+.+.+.|++.+|
T Consensus        81 ~~~GLlla~E~t-gyd~~~~gRl~~~i~~wSv~rik~~GadAvK~L~---yy~pD~~~~in~~k~~~Verig~eC~~~di  156 (324)
T PRK12399         81 EEAGLLLAYEKT-GYDATTTGRLPDCLDVWSAKRIKEEGADAVKFLL---YYDVDEDDEINEQKKAYIERIGSECVAEDI  156 (324)
T ss_pred             CCCCEEEEECCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEE---EECCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             888638996044-5667888767443344589999970657388999---977999778889999999999999997699


Q ss_pred             CCCCCCC
Q ss_conf             6654432
Q gi|254780970|r  525 PIVSGNV  531 (737)
Q Consensus       525 pivgGkv  531 (737)
                      |++==-+
T Consensus       157 pf~lE~l  163 (324)
T PRK12399        157 PFFLEIL  163 (324)
T ss_pred             CCEEEEE
T ss_conf             7157651


No 109
>COG2860 Predicted membrane protein [Function unknown]
Probab=50.60  E-value=3.3  Score=20.39  Aligned_cols=23  Identities=35%  Similarity=0.723  Sum_probs=12.6

Q ss_pred             CCCCCCC-CCCCCCCCCCCEEEEEE
Q ss_conf             7210558-10225767787436877
Q gi|254780970|r  104 GAATGVG-GILRDIFTMGARPVAAM  127 (737)
Q Consensus       104 GAaTg~g-G~iRDi~~~Ga~p~a~~  127 (737)
                      |..|.+| |.|||.+ .|..|..-+
T Consensus        39 a~vTAiGGGtiRDlL-LG~~Pv~wv   62 (209)
T COG2860          39 AVVTAIGGGTIRDLL-LGHYPVFWV   62 (209)
T ss_pred             HHHHHHCCHHHHHHH-CCCCCCEEE
T ss_conf             777872561999998-167881015


No 110
>PRK05973 replicative DNA helicase; Provisional
Probab=50.36  E-value=16  Score=15.69  Aligned_cols=22  Identities=18%  Similarity=0.154  Sum_probs=12.2

Q ss_pred             CCCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             25689779996576564441046666
Q gi|254780970|r  197 ARGIGLPLVYLGAKTGRDGIGGASMA  222 (737)
Q Consensus       197 ~~~~Gd~ii~~G~~tg~dGi~Ga~~s  222 (737)
                      .-+|||.||+-|    |=|+|=.+|+
T Consensus        60 gLqPGDLIIlAA----RPsMGKTafa   81 (237)
T PRK05973         60 QLRPGDLVLLGA----RPGQGKTLLG   81 (237)
T ss_pred             CCCCCCEEEEEC----CCCCCHHHHH
T ss_conf             899867799942----8988789999


No 111
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=50.31  E-value=11  Score=16.84  Aligned_cols=61  Identities=20%  Similarity=0.369  Sum_probs=37.3

Q ss_pred             CCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             4532100001001135678977764102785102232210245666862134699999999852210288665443
Q gi|254780970|r  455 DVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGN  530 (737)
Q Consensus       455 g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGk  530 (737)
                      +..+.+...+||.+..-.+.+|.+.+...|++-+ +.||+-|     .+.|.+         .+.+.+|+|++-.|
T Consensus       149 ~~~~~~~~asPy~~~~~~l~~Aa~~L~~~gadli-vLDCiGY-----t~~~r~---------~~~~~~g~PViLsr  209 (221)
T pfam07302       149 VKEVVVVAASPYHGSEDRLEEAARELLDQGADLI-VLDCIGY-----TQAMKD---------MLQEALGKPVLLSR  209 (221)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEE-EEECCCC-----CHHHHH---------HHHHHHCCCEEEHH
T ss_conf             8871799718988988999999999997598999-9988777-----499999---------99998699999508


No 112
>PRK07778 consensus
Probab=48.96  E-value=6.3  Score=18.46  Aligned_cols=32  Identities=13%  Similarity=0.154  Sum_probs=19.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      ||.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       170 ~P~NPTG~v~s~~~l~~l~~la~~~~i~iisD  201 (386)
T PRK07778        170 SPANPTGTVIAPEELAAIASWCEASGVRLISD  201 (386)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEC
T ss_conf             99898877850799999999985378799943


No 113
>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription]
Probab=48.95  E-value=17  Score=15.54  Aligned_cols=13  Identities=23%  Similarity=0.345  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999985221028
Q gi|254780970|r  511 SVKGIREACQILD  523 (737)
Q Consensus       511 av~gl~d~c~~lg  523 (737)
                      .+-|+-++...|+
T Consensus        58 G~iGLi~Aieryd   70 (247)
T COG1191          58 GMIGLIKAIERYD   70 (247)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             8999999999749


No 114
>pfam04002 DUF2466 Protein of unknown function (DUF2466). This family was named initially with reference to the E. coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions. However the relevant mutation has subsequently been shown to be in recG, where radC is in fact an allele of recG. In addition, a personal communication from Claverys, J-P, et al, indicates a total failure of all attempts to characterize a radiation-related function for RadC in Streptococcus pneumoniae, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair.
Probab=48.34  E-value=6  Score=18.60  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=27.9

Q ss_pred             CHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             0000100113567897776410278510223221024566686213469999999985221028866
Q gi|254780970|r  460 YVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPI  526 (737)
Q Consensus       460 ~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipi  526 (737)
                      .+..+|..--+.|+....+.++.+-=-|        -|+|.....-   .+.-+.+.++|+.+||++
T Consensus        48 ~~~v~pReI~~~Al~~~A~~iIl~HNHP--------SG~~~PS~~D---~~~T~~l~~a~~~l~I~l  103 (123)
T pfam04002        48 SASVHPREIFKRALRLNAAAVILAHNHP--------SGDPTPSQAD---IELTKRLKEAGELLGIRL  103 (123)
T ss_pred             EEEECHHHHHHHHHHCCCCEEEEEECCC--------CCCCCCCHHH---HHHHHHHHHHHHHCCCEE
T ss_conf             6788799999999983898699983189--------9989958879---999999999997689879


No 115
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=48.06  E-value=17  Score=15.45  Aligned_cols=42  Identities=24%  Similarity=0.483  Sum_probs=27.5

Q ss_pred             HCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             027851022322102456668621346999999998522102886654
Q gi|254780970|r  481 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVS  528 (737)
Q Consensus       481 ~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivg  528 (737)
                      +.+||.-++++  +|||+..+.+    ..+-+.-+.+.|.++|+|++-
T Consensus       107 i~lgadAV~~~--Vy~Gse~e~~----~i~~~~~v~~~a~~~Gmp~v~  148 (265)
T COG1830         107 IRLGADAVGAT--VYVGSETERE----MIENISQVVEDAHELGMPLVA  148 (265)
T ss_pred             HHCCCCEEEEE--EECCCCCHHH----HHHHHHHHHHHHHHCCCCEEE
T ss_conf             74787479999--9668762589----999999999999870996499


No 116
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=48.05  E-value=12  Score=16.68  Aligned_cols=29  Identities=14%  Similarity=0.177  Sum_probs=25.8

Q ss_pred             CCHHHHHHHHHHHCCEEECCCCEEECCCC
Q ss_conf             67588999888709713112212104431
Q gi|254780970|r  322 EKQHKAQEILNKWGLHFSIIGITTNDKLF  350 (737)
Q Consensus       322 ~~~~~~~~i~~~~~~~~~~iG~vt~~~~~  350 (737)
                      +-..++.+++++.+++.-.||+||+++.+
T Consensus       187 eca~~L~~~AK~~~i~~~lVGHVTK~G~i  215 (372)
T cd01121         187 ECTAELMRFAKERNIPIFIVGHVTKEGSI  215 (372)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf             99999999998619739999876268863


No 117
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504   RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ).   RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=47.85  E-value=8  Score=17.76  Aligned_cols=47  Identities=15%  Similarity=0.177  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCCC
Q ss_conf             675889998887097131122121044310002586443--443210146650
Q gi|254780970|r  322 EKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVA--NLPIKALSDEAP  372 (737)
Q Consensus       322 ~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~v~--dlp~~~L~~~~P  372 (737)
                      |-.-.+.+++|+.+++--+||+||+||-+    =|..+.  =++..+++++=+
T Consensus       225 E~t~~Lmr~AKt~~iaifiVGHVTKeGsi----AGPkvLEH~vD~vLyfeGd~  273 (481)
T TIGR00416       225 ECTAELMRLAKTRGIAIFIVGHVTKEGSI----AGPKVLEHMVDTVLYFEGDR  273 (481)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCCCCC----CCCHHHHHHHHHHEECCCCC
T ss_conf             99999987652168657997004356754----34046663433110115887


No 118
>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193   This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=47.68  E-value=6.5  Score=18.37  Aligned_cols=38  Identities=29%  Similarity=0.333  Sum_probs=25.6

Q ss_pred             CCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHC
Q ss_conf             6314203777622797304532100001001135678977764102
Q gi|254780970|r  437 AGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIA  482 (737)
Q Consensus       437 aaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a  482 (737)
                      .+++|+.   -.|+|.=.|..     .|--.=.++||.||+||.+-
T Consensus        20 Vs~~RLt---lSGvasR~Gyt-----Yd~IED~KIAVSEA~TN~V~   57 (161)
T TIGR01924        20 VSLIRLT---LSGVASRAGYT-----YDDIEDLKIAVSEACTNAVK   57 (161)
T ss_pred             EEEEEEE---EHHHHHHCCCC-----HHHHHHHHHHHHHHHCCCEE
T ss_conf             7876441---02565524878-----65752067766555303311


No 119
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350   The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) ,  is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars.   The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII).    The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site.    An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , .    According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , :  The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand.  The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 .  The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain.      The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=46.53  E-value=16  Score=15.79  Aligned_cols=73  Identities=14%  Similarity=0.248  Sum_probs=42.1

Q ss_pred             CCCCCHHCCCCCCCC----HHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEE--CCCHHHHHHH
Q ss_conf             138301103477520----1112233201477528996202204667899989861788850899995--4675889998
Q gi|254780970|r  257 NTDAVIAIQDMGAAG----LTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILN--PEKQHKAQEI  330 (737)
Q Consensus       257 ~~~~i~~~~D~gaGG----l~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~--~~~~~~~~~i  330 (737)
                      +.+...-|   +|||    |.+++.+.|..  .|+.+....++-...    .|+ +-+.|  +||.-|  .-+.+.++++
T Consensus        46 ~~~iLl~C---aaGmstsLLv~~l~k~A~~--~~~~~~i~A~~~~~~----~e~-~~~~d--~VlLaPQ~~~~~~~lk~~  113 (142)
T TIGR00853        46 ETNILLLC---AAGMSTSLLVNKLNKAAKE--YGVPVKIAAVSYGAA----MEI-LDDAD--VVLLAPQVAYMLPDLKKE  113 (142)
T ss_pred             CCEEEEEE---CCCCCHHHHHHHHHHHHHH--CCCCEEEEEECCCHH----HHH-HHHHC--EEEEHHHHHHHHHHHHHH
T ss_conf             21168887---6973547899999999984--599758884057634----433-53504--311203267557999985


Q ss_pred             HHHHCCEEECC
Q ss_conf             88709713112
Q gi|254780970|r  331 LNKWGLHFSII  341 (737)
Q Consensus       331 ~~~~~~~~~~i  341 (737)
                      -++.|+|..+|
T Consensus       114 t~~~Gip~~~i  124 (142)
T TIGR00853       114 TDKKGIPVEVI  124 (142)
T ss_pred             CCCCCCCEEEE
T ss_conf             13589753663


No 120
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=46.08  E-value=19  Score=15.25  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=12.4

Q ss_pred             CCCCCHHHHHHHHHCCCCCCE
Q ss_conf             775201112233201477528
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGI  287 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~  287 (737)
                      +|+|||.|.+..-..++|+|-
T Consensus        34 vG~GGLG~~~~~yLa~aGvG~   54 (355)
T PRK05597         34 IGAGGLGSPALLYLAGAGVGH   54 (355)
T ss_pred             ECCCHHHHHHHHHHHHCCCCE
T ss_conf             877766899999999849975


No 121
>TIGR03277 methan_mark_9 putative methanogenesis marker domain 9. A gene for a protein that contains a copy of this domain, to date, is found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. A 69-amino acid core region of this 110-amino acid domain contains eight invariant Cys residues, including two copies of a motif [WFY]CCxxKPC. These motifs could be consistent with predicted metal-binding transcription factor as was suggested for the COG4008 family. Some members of this family have an additional N-terminal domain of about 250 amino acids from the nifR3 family of predicted TIM-barrel proteins.
Probab=45.91  E-value=19  Score=15.23  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=11.5

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             2147889986199989999999995
Q gi|254780970|r    4 PSPILEILTAHGLTKDECDQIIHIL   28 (737)
Q Consensus         4 ~~~~~e~~~~~gL~~~e~~~i~~~l   28 (737)
                      |-|+....+++|+|+|||-.|+..+
T Consensus        27 ~CP~~~al~~~g~speef~~~K~ef   51 (109)
T TIGR03277        27 PCPIHPKLAELGLSPQEFVRIKEEF   51 (109)
T ss_pred             CCCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf             7754799999099999999999998


No 122
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=45.68  E-value=19  Score=15.21  Aligned_cols=112  Identities=19%  Similarity=0.306  Sum_probs=70.1

Q ss_pred             CHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHC---------------CCC--------CCCCHHHHHH----CCCCC
Q ss_conf             01103477520111223320147752899620220---------------466--------7899989861----78885
Q gi|254780970|r  261 VIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVP---------------TCE--------EGMTAYEMML----SESQE  313 (737)
Q Consensus       261 i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp---------------~~~--------~~l~~~ei~~----sEsQe  313 (737)
                      +.+--|.|-=|++.++.|+++..+ .-++++.-||               +.-        +-|.|||...    .-.|.
T Consensus        77 lVSsGDpgVYgMA~lv~E~~~~~~-~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSDlLtPwe~IekRl~aAA~a  155 (249)
T COG1010          77 LVSSGDPGVYGMAGLVLEAAEEEG-WYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSDLLTPWEVIEKRLRAAAEA  155 (249)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCC-CCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEHHHCCCCHHHHHHHHHHHHHC
T ss_conf             982799538886999999998618-7776379807757999999973897555549999676288689999999988647


Q ss_pred             EEEEEE-------ECCCHHHHHHHHHHHCCEEECCCCEEECCC----CCCCC-C--C-CCCCCCCCCCCCCCCCE
Q ss_conf             089999-------546758899988870971311221210443----10002-5--8-64434432101466501
Q gi|254780970|r  314 RMLMIL-------NPEKQHKAQEILNKWGLHFSIIGITTNDKL----FRVIH-R--G-EEVANLPIKALSDEAPE  373 (737)
Q Consensus       314 R~~~~v-------~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~----~~v~~-~--g-~~v~dlp~~~L~~~~P~  373 (737)
                      -+++++       .|+++.+..+|+.++.-+-+-+|-|.+-+|    .++.- .  . ...+|+-.-.+.++.-.
T Consensus       156 dfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnagR~~e~v~ittL~~l~~~~~iDM~T~vIIGns~T  230 (249)
T COG1010         156 DFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAGREGEEVRITTLGDLDEAEEIDMRTIVIIGNSET  230 (249)
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEHHHHCCCCCCCCEEEEEECCCCE
T ss_conf             979999777431352789999999998558998489983378888649999968816565556547999858740


No 123
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.39  E-value=19  Score=15.18  Aligned_cols=60  Identities=17%  Similarity=0.298  Sum_probs=36.6

Q ss_pred             HHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECC---CHHHHHHHHHHHCCEEECC
Q ss_conf             111223320147752899620220466789998986178885089999546---7588999888709713112
Q gi|254780970|r  272 LTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPE---KQHKAQEILNKWGLHFSII  341 (737)
Q Consensus       272 l~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~---~~~~~~~i~~~~~~~~~~i  341 (737)
                      |++++.|-|..-  |.+++.+.+...+    -.|+ +.+.   -++.+.|.   ..+++.+.+++.|++..+|
T Consensus        16 la~~m~k~A~~~--gi~~~i~A~~~~~----~~d~-~~~y---DvilLaPQv~~~~~~lk~~ad~~Gi~v~~i   78 (99)
T cd05565          16 LANALNKGAKER--GVPLEAAAGAYGS----HYDM-IPDY---DLVILAPQMASYYDELKKDTDRLGIKLVTT   78 (99)
T ss_pred             HHHHHHHHHHHC--CCCEEEEEEECHH----HHHH-HHCC---CEEEECHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             999999999981--9976999510344----8988-7079---999998508888999999999839918870


No 124
>PRK00024 radC DNA repair protein RadC; Reviewed
Probab=45.08  E-value=6.8  Score=18.24  Aligned_cols=54  Identities=24%  Similarity=0.299  Sum_probs=24.3

Q ss_pred             HCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             00100113567897776410278510223221024566686213469999999985221028866
Q gi|254780970|r  462 KADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPI  526 (737)
Q Consensus       462 ~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipi  526 (737)
                      ..+|..-.+.|+....+.++.+        =|=--|+|+..+.  .. ..-+.+.++|..+||++
T Consensus       151 ~v~pReI~~~Al~~~A~~iIl~--------HNHPSG~~~PS~~--Di-~~T~~l~~a~~~lgI~l  204 (224)
T PRK00024        151 IVHPREIVKEALKLNAAALILA--------HNHPSGDPEPSQA--DI-LITKRLKEAGELLGIRL  204 (224)
T ss_pred             EECHHHHHHHHHHHCCCEEEEE--------EECCCCCCCCCHH--HH-HHHHHHHHHHHHCCCEE
T ss_conf             7628999999998278879999--------5469999998988--99-99999999997689868


No 125
>pfam11212 DUF2999 Protein of unknown function (DUF2999). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=45.06  E-value=19  Score=15.15  Aligned_cols=27  Identities=26%  Similarity=0.682  Sum_probs=16.4

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf             478899861999899999999957897
Q gi|254780970|r    6 PILEILTAHGLTKDECDQIIHILKRQP   32 (737)
Q Consensus         6 ~~~e~~~~~gL~~~e~~~i~~~l~R~P   32 (737)
                      |+..+.|+|..|++-+..++..|-.+|
T Consensus         3 PIia~LKehNvSdeqi~elFqalteNP   29 (82)
T pfam11212         3 PIIAILKEHNVSDEQIKELFQALTENP   29 (82)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCH
T ss_conf             399999982887999999999985297


No 126
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of  a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=44.02  E-value=20  Score=15.04  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=14.2

Q ss_pred             CCCCCHHHHHHHHHCCCCCCEE
Q ss_conf             7752011122332014775289
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGIT  288 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~~  288 (737)
                      +|+|||.+.+.+...++|+|--
T Consensus        27 vG~GGlGs~~~~~La~~Gvg~i   48 (228)
T cd00757          27 VGAGGLGSPAAEYLAAAGVGKL   48 (228)
T ss_pred             ECCCHHHHHHHHHHHHCCCCEE
T ss_conf             8877889999999998399758


No 127
>PRK08443 consensus
Probab=43.36  E-value=10  Score=16.99  Aligned_cols=33  Identities=12%  Similarity=0.047  Sum_probs=20.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             566686213469999999985221028866544
Q gi|254780970|r  497 GNPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       497 ~~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      .+|.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       169 ~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~D  201 (388)
T PRK08443        169 NTPSNPTGSVYSKEELEAIAKVLKGTDIWVLSD  201 (388)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECC
T ss_conf             689899884764478999999862357567422


No 128
>PRK08328 hypothetical protein; Provisional
Probab=43.00  E-value=14  Score=16.03  Aligned_cols=44  Identities=16%  Similarity=0.216  Sum_probs=27.9

Q ss_pred             CCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCC
Q ss_conf             775201112233201477528996202204667899989861788
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSES  311 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEs  311 (737)
                      +|+|||.+.+.++..++|+|--.=.|.=-+...+|. ..+++.|.
T Consensus        33 vG~GGlGs~~~~~La~~GvG~i~lvD~D~ve~SNLn-RQil~~~~   76 (230)
T PRK08328         33 VGVGGLGSPVAYYLAAAGVGTVLLIDEQTPELSNLN-RQILHWEE   76 (230)
T ss_pred             ECCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCCH-HHHHCCHH
T ss_conf             887878999999999848986898748787515632-55403087


No 129
>COG4915 XpaC 5-bromo-4-chloroindolyl phosphate hydrolysis protein [General function prediction only]
Probab=42.86  E-value=20  Score=15.03  Aligned_cols=14  Identities=21%  Similarity=0.190  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999987
Q gi|254780970|r  718 ATLQTKYESWFPEF  731 (737)
Q Consensus       718 ~~l~~~w~~~l~~~  731 (737)
                      .+|...-++-|.++
T Consensus       170 ~elsr~i~kdl~~l  183 (204)
T COG4915         170 KELSRSIEKDLHEL  183 (204)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 130
>PRK07324 transaminase; Validated
Probab=42.62  E-value=6  Score=18.64  Aligned_cols=95  Identities=15%  Similarity=0.090  Sum_probs=45.1

Q ss_pred             CCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             00001357631420377762279730453210000100113567897776410278510223221024566686213469
Q gi|254780970|r  429 SIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQF  508 (737)
Q Consensus       429 tv~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql  508 (737)
                      ++..||+-+-|..+.+.....+.-+.|..+.....++..+-..- .+.+..++.-..+ + +  .+  .||.+|-..---
T Consensus        99 ~l~~pGD~Viv~~P~Y~~~~~~~~~~G~~v~~~~l~~~~~~~~D-l~~l~~~i~~~tk-l-i--il--~nP~NPTG~v~s  171 (373)
T PRK07324         99 ALIEPGDHVISVYPTYQQLYDIPESLGAEVDYWKLREENGWLPD-LDELKRLVRPNTK-L-I--CI--NNANNPTGALMD  171 (373)
T ss_pred             HHCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCC-HHHHHHHCCCCCE-E-E--EE--CCCCCCCCCCCC
T ss_conf             97599998998899857799999983987654076722598879-9999961887876-9-9--97--999798897788


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             9999999852210288665443
Q gi|254780970|r  509 VHSVKGIREACQILDFPIVSGN  530 (737)
Q Consensus       509 ~~av~gl~d~c~~lgipivgGk  530 (737)
                      .+-++.+.+.|++.++.|++-.
T Consensus       172 ~e~l~~l~~la~~~~i~iisDE  193 (373)
T PRK07324        172 RAFLEEIVEIAKSVDAYVLSDE  193 (373)
T ss_pred             HHHHHHHHHHHHCCCEEEEECC
T ss_conf             9999999987541785998125


No 131
>PRK11823 DNA repair protein RadA; Provisional
Probab=41.37  E-value=16  Score=15.70  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=29.0

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCC
Q ss_conf             788850899995467588999888709713112212104431
Q gi|254780970|r  309 SESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLF  350 (737)
Q Consensus       309 sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~  350 (737)
                      |=+|=|       +-..++.++|++.+++.-.||+||+++.+
T Consensus       188 svsQVr-------e~a~~L~~~AK~~~i~~~lVGHVTKdG~i  222 (454)
T PRK11823        188 SVSQVR-------ECAAELTRLAKQSGIAVFLVGHVTKEGAI  222 (454)
T ss_pred             CHHHHH-------HHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf             789999-------99999999997449828999977267764


No 132
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171.
Probab=40.97  E-value=14  Score=16.03  Aligned_cols=180  Identities=23%  Similarity=0.387  Sum_probs=94.3

Q ss_pred             CCCCHHHHHHHH-HHHCCCC-CCCCC--HHHHHHHHHC----CCCEEECCCCCEEEE--------EECCCEEEEEEECCC
Q ss_conf             897188999985-3300110-74458--8999751206----974899334773689--------836983999995178
Q gi|254780970|r   30 RQPTLTEIGIIS-AMWNEHC-SYKSS--KKWLRTLPTT----GKHVIQGPGENAGVV--------DIGGGDCVVFKMESH   93 (737)
Q Consensus        30 R~Pt~~El~~~~-~~wSEHC-~~k~~--~~~l~~~~~~----~~~vi~~~~~~a~vi--------~~~~~~~~~~k~EtH   93 (737)
                      |-||++|+-+.| |-|--|- +-.+.  ...+...-+.    |.+|  .|-+|.+.|        ++-++|+--|+=+| 
T Consensus       162 RLPTEAEW~~VAsq~W~~E~~sWNs~NS~~~~HeVC~~PGldGsnv--kfe~n~~~vCDmaGN~lEwVNDW~~~F~dtT-  238 (982)
T TIGR02171       162 RLPTEAEWVYVASQSWDPEKYSWNSENSEYELHEVCTSPGLDGSNV--KFEDNEGNVCDMAGNVLEWVNDWYASFKDTT-  238 (982)
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE--EEECCCCCCCCHHCCHHHHHCCCCCCCCCCC-
T ss_conf             1850888788875167646774156177862444315788776410--2003777400002012220056000312562-


Q ss_pred             CCCCCCCCCCCCCCC--------CCCCCCCC------CCCC-CEEEEEE---EE----CCCCCCCCCCHHHH--------
Q ss_conf             877765888872105--------58102257------6778-7436877---50----45787568638889--------
Q gi|254780970|r   94 NHPSYIEPYQGAATG--------VGGILRDI------FTMG-ARPVAAM---NS----LRFGAIHHPKTKHL--------  143 (737)
Q Consensus        94 NhPs~i~P~~GAaTg--------~gG~iRDi------~~~G-a~p~a~~---~~----l~~g~~~~p~~~~~--------  143 (737)
                           |.=|=|++-+        =||-+|.-      -++| -+||+.-   |.    |-||.+.++  -|+        
T Consensus       239 -----ltNyvGs~d~~~lg~~VVKGGsY~~~ps~~~ly~RGDVYPv~~St~~DY~GFRLv~G~IPdA--~wLd~~G~v~t  311 (982)
T TIGR02171       239 -----LTNYVGSSDEGSLGERVVKGGSYRNSPSAINLYTRGDVYPVTSSTKGDYVGFRLVLGAIPDA--TWLDESGKVAT  311 (982)
T ss_pred             -----EEEEECCCCCCCCCCCEEECCCCCCCCCCEECCCCCCCCCEECCCCCCCCEEEEECCCCCCC--CCCCCCCCEEE
T ss_conf             -----01030567754436634535754567232001478863120037877620344411488875--54188896768


Q ss_pred             -------H-HHHHHHHHH--HHHHCC-CCCCCCEEEEECCCCCCCCCCEEEECCCCHHH---HHHCCCCCCCCEEEEECC
Q ss_conf             -------9-888745886--654308-72113203552156766422112211211355---431122568977999657
Q gi|254780970|r  144 -------L-SGVVAGIAG--YSNSFG-VPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNA---IFSSKARGIGLPLVYLGA  209 (737)
Q Consensus       144 -------~-~~~~~G~~~--ygN~~G-~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~---~~~~~~~~~Gd~ii~~G~  209 (737)
                             . ..+-+-.+.  |.-|+= +=-|.|+..|-+ |.++      +..++++++   +.+..-...|..|-.+  
T Consensus       312 ~~~~~~~~~~~~r~~~gtkky~~KLaFRND~TgnL~yID-y~~~------~~~~~EI~D~~~vyHPDISPDG~~VAFC--  382 (982)
T TIGR02171       312 SKVKSLISSSEIRELTGTKKYKAKLAFRNDVTGNLAYID-YAKG------ASKVVEIEDTIKVYHPDISPDGKKVAFC--  382 (982)
T ss_pred             EEEEEEEEHHHHHHHHCCEEEEEEEEEECCCCCCEEEEE-ECCC------CCEEEEEECCCCEECCCCCCCCCEEEEE--
T ss_conf             887875205888853077036777787047643326887-0588------3369983037412027407986874576--


Q ss_pred             CCCCCCCHHH-HHHHHHHCCC
Q ss_conf             6564441046-6667772865
Q gi|254780970|r  210 KTGRDGIGGA-SMASEEFGEN  229 (737)
Q Consensus       210 ~tg~dGi~Ga-~~sS~~~~~~  229 (737)
                       |+--|+-|- ...=+.|++.
T Consensus       383 -T~~EG~~GkS~vYVR~Ln~~  402 (982)
T TIGR02171       383 -TGIEGVDGKSEVYVRDLNAS  402 (982)
T ss_pred             -CCCCCCCCCCEEEEECCCCC
T ss_conf             -34114478743898445557


No 133
>PRK09276 aspartate aminotransferase; Provisional
Probab=40.39  E-value=15  Score=15.94  Aligned_cols=32  Identities=6%  Similarity=0.015  Sum_probs=19.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       174 ~P~NPTG~v~s~~~l~~l~~la~~~~i~ii~D  205 (385)
T PRK09276        174 YPNNPTGAVADLEFFEKVVDFAKKYDIIVCHD  205 (385)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEH
T ss_conf             99898551111889999987632557569754


No 134
>PRK10481 hypothetical protein; Provisional
Probab=39.95  E-value=20  Score=15.04  Aligned_cols=59  Identities=24%  Similarity=0.459  Sum_probs=33.1

Q ss_pred             CCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             32100001001135678977764102785102232210245666862134699999999852210288665443
Q gi|254780970|r  457 TPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGN  530 (737)
Q Consensus       457 ~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgGk  530 (737)
                      .|.+...+||.|..-.+.+|.+.+..-|++-+ +.||.-|     .+.|.+         .+.+.+|+|++-.|
T Consensus       154 ~~~~~~asPY~g~~~~l~~Aa~~L~~~gadli-vLDCiGY-----t~~~r~---------~~~~~~g~PViLsr  212 (224)
T PRK10481        154 PPVVSLASPYHGSEQKLIDAGKELLAQGADLI-VLDCLGY-----HQRHRD---------LLQKALDVPVLLSN  212 (224)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEE-EEECCCC-----CHHHHH---------HHHHHHCCCEEEEH
T ss_conf             61699837988988999999999986599999-9987777-----599999---------99998599999518


No 135
>PRK08363 alanine aminotransferase; Validated
Probab=39.88  E-value=12  Score=16.62  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      ||.+|-..---.+-++.+.+.|++.++.+++-
T Consensus       174 nP~NPTG~v~s~~~l~~i~~la~~~~~~vIsD  205 (398)
T PRK08363        174 NPNNPTGALYDKKTLKEILDIAGEHDLPVISD  205 (398)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCEEECH
T ss_conf             99998888654889999999987559647613


No 136
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=39.76  E-value=10  Score=16.98  Aligned_cols=53  Identities=21%  Similarity=0.311  Sum_probs=25.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             0100113567897776410278510223221024566686213469999999985221028866
Q gi|254780970|r  463 ADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPI  526 (737)
Q Consensus       463 ~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipi  526 (737)
                      ..|....+.|+-.+..-++.+---|-        |+|+....  + ...-+-+.++|.-+||.+
T Consensus       152 V~PREI~k~Al~~nAaavIlaHNHPS--------Gd~~PS~a--D-~~iT~rl~~a~~ll~I~v  204 (224)
T COG2003         152 VHPREIFKEALKYNAAAVILAHNHPS--------GDPTPSRA--D-ILITERLKEAGKLLGIRL  204 (224)
T ss_pred             ECHHHHHHHHHHHCCHHHHEECCCCC--------CCCCCCHH--H-HHHHHHHHHHHHHCCCEE
T ss_conf             33799999999822135530015899--------99985778--8-999999999987429331


No 137
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=39.17  E-value=24  Score=14.54  Aligned_cols=20  Identities=20%  Similarity=0.210  Sum_probs=12.7

Q ss_pred             EEEEEEECCCHHHHHHHHHH
Q ss_conf             08999954675889998887
Q gi|254780970|r  314 RMLMILNPEKQHKAQEILNK  333 (737)
Q Consensus       314 R~~~~v~~~~~~~~~~i~~~  333 (737)
                      ..+-....++.++-.++|++
T Consensus       349 PVLa~y~~~d~~~A~~~~~~  368 (862)
T PRK13805        349 PVLAMYKAKSFEDAVEKAEK  368 (862)
T ss_pred             CEEEEEEECCHHHHHHHHHH
T ss_conf             00599895899999999999


No 138
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=38.70  E-value=23  Score=14.64  Aligned_cols=44  Identities=18%  Similarity=0.244  Sum_probs=25.4

Q ss_pred             CCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCC
Q ss_conf             775201112233201477528996202204667899989861788
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSES  311 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEs  311 (737)
                      +|+|||.+.+.+....+|+|--.=.|.=.+...+|. ..++++|+
T Consensus        27 vG~GGLG~~v~~~La~aGvg~i~ivD~d~v~~snL~-RQ~l~~~~   70 (197)
T cd01492          27 IGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLG-AQFLIPAE   70 (197)
T ss_pred             ECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCC-CCEECCCC
T ss_conf             887889999999999837986999989918777739-78603233


No 139
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=38.67  E-value=24  Score=14.49  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=24.0

Q ss_pred             HHHHHCCCCCEEEEEEEC-CCHHHHHHHHHHHCCEEECC
Q ss_conf             898617888508999954-67588999888709713112
Q gi|254780970|r  304 YEMMLSESQERMLMILNP-EKQHKAQEILNKWGLHFSII  341 (737)
Q Consensus       304 ~ei~~sEsQeR~~~~v~~-~~~~~~~~i~~~~~~~~~~i  341 (737)
                      ++-|..+.|-+.++-++. +.+.++.+.+++.++++.+|
T Consensus        41 ~~~W~~~G~~KIvlkv~~e~~l~~l~~~a~~~~l~~~~V   79 (115)
T cd02430          41 LRAWEREGQKKIVLKVNSEEELLELKKKAKSLGLPTSLI   79 (115)
T ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             999996799569997799999999999999879978999


No 140
>PRK04250 dihydroorotase; Provisional
Probab=38.51  E-value=24  Score=14.48  Aligned_cols=13  Identities=23%  Similarity=0.422  Sum_probs=6.3

Q ss_pred             EEEEECCCEEEEE
Q ss_conf             6898369839999
Q gi|254780970|r   76 GVVDIGGGDCVVF   88 (737)
Q Consensus        76 ~vi~~~~~~~~~~   88 (737)
                      +-|-|.|+.-..+
T Consensus        19 adI~I~dGkI~~I   31 (408)
T PRK04250         19 GSIGIEDGKISKI   31 (408)
T ss_pred             EEEEEECCEEEEE
T ss_conf             6699989999893


No 141
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=38.36  E-value=24  Score=14.46  Aligned_cols=83  Identities=25%  Similarity=0.388  Sum_probs=54.7

Q ss_pred             HHCCCCHHHHHHHHH-HHCCCCCHHHHH--------HHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEC--C-CCCEEEEE
Q ss_conf             861999899999999-957897188999--------98533001107445889997512069748993--3-47736898
Q gi|254780970|r   12 TAHGLTKDECDQIIH-ILKRQPTLTEIG--------IISAMWNEHCSYKSSKKWLRTLPTTGKHVIQG--P-GENAGVVD   79 (737)
Q Consensus        12 ~~~gL~~~e~~~i~~-~l~R~Pt~~El~--------~~~~~wSEHC~~k~~~~~l~~~~~~~~~vi~~--~-~~~a~vi~   79 (737)
                      ...|++.++++.+.+ ...|+|...|.-        .+.-..-.|-.|   ...|..+ .+++++|+-  | -+|.|-++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~r~p~e~ef~qav~ev~~sl~p~~~~~p~y---~~ilerl-~ePeR~i~frVpw~~D~G~v~   95 (469)
T PTZ00079         20 NYEGLPDQEMNELYERVKQRDGNQTEFLQAFEEVLYSLKPLFMREPKY---LPIIERL-SEPERVIQFRVPWMDDAGRQR   95 (469)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHH---HHHHHHH-CCCCEEEEEEEEEEECCCCEE
T ss_conf             645650888999999998408997799999999999889999739489---9999986-488559999988997799688


Q ss_pred             ECCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             36983999995178877765888872
Q gi|254780970|r   80 IGGGDCVVFKMESHNHPSYIEPYQGA  105 (737)
Q Consensus        80 ~~~~~~~~~k~EtHNhPs~i~P~~GA  105 (737)
                      +..+|-+.+     |  |++-||-|-
T Consensus        96 v~~GyRVQ~-----n--~alGPyKGG  114 (469)
T PTZ00079         96 KNRGFRVQY-----N--SALGPYKGG  114 (469)
T ss_pred             EEEEEEEEE-----C--CCCCCCCCC
T ss_conf             862457775-----3--877888787


No 142
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=38.19  E-value=24  Score=14.44  Aligned_cols=38  Identities=3%  Similarity=0.037  Sum_probs=27.5

Q ss_pred             EEEEEEECCCHH-HHHHHHHHHCCEEECCCCEEECCCCC
Q ss_conf             089999546758-89998887097131122121044310
Q gi|254780970|r  314 RMLMILNPEKQH-KAQEILNKWGLHFSIIGITTNDKLFR  351 (737)
Q Consensus       314 R~~~~v~~~~~~-~~~~i~~~~~~~~~~iG~vt~~~~~~  351 (737)
                      |-+..++++-+. ++..+++-.++.+..||=..+.....
T Consensus       278 ~~i~~~p~~~v~~Ql~av~~Di~vdavK~GML~~~~~i~  316 (738)
T PRK09517        278 NTIHTPPVDFLRAQLDAVFSDVTVDAVKLGMLGSADTVD  316 (738)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
T ss_conf             146309999999999998706887858775758899999


No 143
>pfam10112 Halogen_Hydrol 5-bromo-4-chloroindolyl phosphate hydrolysis protein. Members of this family of prokaryotic proteins mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=38.15  E-value=23  Score=14.58  Aligned_cols=20  Identities=25%  Similarity=0.398  Sum_probs=9.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCC
Q ss_conf             14999999999999987245
Q gi|254780970|r  715 IPVATLQTKYESWFPEFISE  734 (737)
Q Consensus       715 ~~i~~l~~~w~~~l~~~~~~  734 (737)
                      .-+++|....++-+.+++++
T Consensus       167 ~~ld~L~~~~~~dl~~l~~~  186 (199)
T pfam10112       167 ITIDELSRTIEKDLQELLSD  186 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999996


No 144
>PRK07777 aminotransferase; Validated
Probab=37.30  E-value=9.8  Score=17.17  Aligned_cols=47  Identities=15%  Similarity=0.236  Sum_probs=28.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             6588887210558102257677874368775045787568638889988874588
Q gi|254780970|r   98 YIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIA  152 (737)
Q Consensus        98 ~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~  152 (737)
                      -+.||+..+      +|+.+.+=+++-  .=+|..|+|+.|-+..+.+.+.+-+.
T Consensus         5 rl~~~~~~~------~~~~~~~a~~~~--~I~l~~G~Pd~~~p~~i~~a~~~a~~   51 (386)
T PRK07777          5 RLRPFGTTI------FAEMSALAVRTG--AVNLGQGFPDEDGPPEMLEAAQEAIA   51 (386)
T ss_pred             CCCCCCCCH------HHHHHHHHCCCC--CEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf             138998749------999999857999--88949978998568999999999986


No 145
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=37.20  E-value=25  Score=14.34  Aligned_cols=113  Identities=24%  Similarity=0.333  Sum_probs=57.3

Q ss_pred             EEEECCCCHHH--HHHCCCCCCCCE---EEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             12211211355--431122568977---9996576564441046666777286533344433267989998889998740
Q gi|254780970|r  181 TFAAGIAKTNA--IFSSKARGIGLP---LVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLEL  255 (737)
Q Consensus       181 ~~~~Gi~~~~~--~~~~~~~~~Gd~---ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~  255 (737)
                      +.|.|+.|..+  ++..||+  ||-   ||+.|-+.|.       +-+.++   ....+      | +..|.+-|++..|
T Consensus        59 A~AAGieP~~~mNPvLLKPk--gdf~SQviv~G~a~g~-------~~~~~Y---~~~~~------d-~~~~~i~eSle~L  119 (502)
T TIGR00313        59 ALAAGIEPSVHMNPVLLKPK--GDFTSQVIVHGRAVGD-------MNAQEY---YKNKV------D-FLLKAIKESLEIL  119 (502)
T ss_pred             HHHCCCCCCCCCCCCCCCCC--CCCEEEEEEEEECCCC-------CCHHHH---HHHHH------H-HHHHHHHHHHHHH
T ss_conf             98638788623487101678--8846678984112466-------761567---77999------9-9999999999875


Q ss_pred             CCC-CCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH
Q ss_conf             113-8301103477520111223320147752899620220466789998986178885089999546758899988870
Q gi|254780970|r  256 MNT-DAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKW  334 (737)
Q Consensus       256 ~~~-~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~  334 (737)
                      -+. .+|. |  =|||+              -|||+|     ++..|.=++|+- =.|-..+++.   |.       .|=
T Consensus       120 ~~~Yd~vv-~--EGAGS--------------~AEINL-----~~rDLaN~~iA~-~~~A~~iLvA---DI-------DRG  166 (502)
T TIGR00313       120 AEEYDLVV-I--EGAGS--------------PAEINL-----KERDLANMRIAE-LADADVILVA---DI-------DRG  166 (502)
T ss_pred             HCCCCEEE-E--ECCCC--------------CCCCCC-----CCCCCHHHHHHH-HCCCCEEEEE---EC-------CCC
T ss_conf             20288899-8--26887--------------100053-----315722478986-4397679997---50-------777


Q ss_pred             CCEEECCCCEE
Q ss_conf             97131122121
Q gi|254780970|r  335 GLHFSIIGITT  345 (737)
Q Consensus       335 ~~~~~~iG~vt  345 (737)
                      ||=|++.|+..
T Consensus       167 GVFAsi~GTl~  177 (502)
T TIGR00313       167 GVFASIYGTLK  177 (502)
T ss_pred             CCHHHHHHHHH
T ss_conf             43243374666


No 146
>PRK07683 aminotransferase A; Validated
Probab=36.44  E-value=12  Score=16.46  Aligned_cols=35  Identities=11%  Similarity=0.055  Sum_probs=22.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             24566686213469999999985221028866544
Q gi|254780970|r  495 NFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       495 nf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      .+.||.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       166 il~~P~NPtG~v~s~e~l~~i~~la~~~~i~ii~D  200 (387)
T PRK07683        166 VLPYPSNPTGVTLSKEELKDIANVLKDKNIFVLSD  200 (387)
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECC
T ss_conf             64799598978878999999999761369447546


No 147
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=36.38  E-value=19  Score=15.23  Aligned_cols=60  Identities=20%  Similarity=0.356  Sum_probs=33.7

Q ss_pred             CCCCCHHHHHHHHHCCCCCCEEE--EEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHC
Q ss_conf             77520111223320147752899--6202204667899989861788850899995467588999888709
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGITL--DLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWG  335 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~~i--~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~  335 (737)
                      +|+|||.+.+.+....+|+|--.  |-|.|-  ..+|. ..++++|+.-      -..+.+...+..++-+
T Consensus        38 vG~GGlG~~~~~~La~aGvg~i~lvD~D~ve--~sNLn-RQ~l~~~~di------G~~Kv~~a~~~l~~in   99 (245)
T PRK05690         38 VGLGGLGCAAAQYLAAAGVGTLTLVDFDTVS--LSNLQ-RQVLHDDATI------GQPKVESAKAALARIN   99 (245)
T ss_pred             ECCCHHHHHHHHHHHHCCCCEEEEEECCCCC--CCCHH-HHHCCCHHHC------CCCHHHHHHHHHHHHC
T ss_conf             8777778999999998599659999688678--88678-8864598778------9887999999999758


No 148
>TIGR02719 repress_PhaQ poly-beta-hydroxybutyrate-responsive repressor; InterPro: IPR014091   Members of this family are transcriptional regulatory proteins found in the vicinity of poly-beta-hydroxybutyrate (PHB) operons in several species of Bacillus. This protein appears to have repressor activity modulated by PHB itself. This protein belongs to the larger PadR family..
Probab=36.09  E-value=19  Score=15.21  Aligned_cols=31  Identities=16%  Similarity=0.045  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCHHHHHHH
Q ss_conf             9999999999959806994648657999999
Q gi|254780970|r  609 NHGFFVLSMINAKKITACHDISTGGLIITLA  639 (737)
Q Consensus       609 ~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~  639 (737)
                      ++++++++|=++.+|.|--|-|+||=|--|.
T Consensus        59 NVYRTLR~LEK~NLI~S~WDTS~~GPA~RIY   89 (138)
T TIGR02719        59 NVYRTLRKLEKDNLISSTWDTSDEGPAKRIY   89 (138)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             3778988876651355666468878630000


No 149
>KOG1327 consensus
Probab=36.08  E-value=16  Score=15.71  Aligned_cols=44  Identities=27%  Similarity=0.483  Sum_probs=27.2

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHC--------CCCC--H-HHHHHHCCCC-CCCCCCH
Q ss_conf             0001001135678977764102--------7851--0-2232210245-6668621
Q gi|254780970|r  461 VKADPFEGTKQAVAECWRNIIA--------TGAK--P-LAITDNLNFG-NPEKEEI  504 (737)
Q Consensus       461 ~~~dP~~ga~~AV~Eal~Nl~a--------~Ga~--P-lait~~lnf~-~P~~~e~  504 (737)
                      ...|||..|..+|++.+.+--.        =||+  | -.+++++++. +|++++.
T Consensus       313 ~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c  368 (529)
T KOG1327         313 HQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPEC  368 (529)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             89988999999971341055877764234546657998652420220378899854


No 150
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=35.91  E-value=26  Score=14.20  Aligned_cols=25  Identities=8%  Similarity=-0.074  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             3469999999985221028866544
Q gi|254780970|r  505 MGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       505 ~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      ..++.+.++.++.+|+++++||+.-
T Consensus       163 ~~~i~~i~~~Lk~lAke~~v~Vi~l  187 (271)
T cd01122         163 RKALDEIMTKLRGFATEHGIHITLV  187 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9999999999999999979977999


No 151
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase; InterPro: IPR012703   Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. 2-Aminoethylphosphonate (AEP), the most common naturally occurring phosphonate, is an important precursor used in the biosynthesis of phosphonolipids, phosphonoproteins, and phosphonoglycans.   This entry represents 2-aminoethylphosphonate-pyruvate transaminase (AEPT)(2.6.1.37 from EC) which catalyses the interconversion of AEP and phosphonoacetaldehyde (P-Ald), coupled with the interconversion of pryuvate and L-alanine. In some bacterial species this is the first step in an AEP degradation pathway which allows them to utilise this compound as a source of carbon, nitrogen and phosphorus. Phosphonoacetaldeyhde hydrolase, often encoded by an adjacent gene, then converts P-Ald to acetaldehyde and phosphate.Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lyase complex as found in Escherichia coli.   The crystal structure of AEPT from Salmonella typhimurium has been studied to 2.2 A resolution . The protein is a homodimer where each subunit is composed of two domains, large and small. The large domain forms an alpha-beta complex characteristic of the aspartate transaminase family, while the small domain is comosed of highly twisted beta strands. The active site contains a pyridoxal 5'-phosphate cofactor and is found at the domain interface, being composed of residues from both subunits..
Probab=35.34  E-value=27  Score=14.15  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCEEEEECHHHHH
Q ss_conf             89999999999999995980699464865799999999845897089980566689878887298832189999688099
Q gi|254780970|r  604 CHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYVVCISPENQD  683 (737)
Q Consensus       604 ~~~~k~~~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~~d~~~~LFsEs~Gr~ii~V~~~~~~  683 (737)
                      ......++.++.++-++|-|.|=|-.-.--=-.=+.+|   ..+|++.-|+.....--+....+.+..+|       +-.
T Consensus       246 THvV~Af~qAL~el~~EGGv~aR~~RY~~nq~~L~~~m---~~LGF~~ll~~~~~sPIItsF~~P~~~~y-------~F~  315 (366)
T TIGR02326       246 THVVHAFAQALLELEKEGGVEARYQRYQSNQKLLVAGM---RALGFEPLLDDELQSPIITSFYSPEDPDY-------RFA  315 (366)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCCCHHHCCCEEEEEECCCCCCC-------HHH
T ss_conf             68999999999999845897457899999999999999---86155114754345886898507788971-------389


Q ss_pred             HHHHHHHHCCCCEEEEEEECC-CEEEEECCEECCHHHHHHHHH
Q ss_conf             899999857984999899879-868980741214999999999
Q gi|254780970|r  684 LVMSEANNKNIPLRYLGKVSG-STLSIHNILNIPVATLQTKYE  725 (737)
Q Consensus       684 ~~~~~~~~~gi~~~~IG~Vt~-~~l~i~~~~~~~i~~l~~~w~  725 (737)
                      .|-+.+++.|.-.+. |+|+. +.|.|-++-+++-.|++.+-.
T Consensus       316 ~fY~~lk~~GFviYP-GKvs~~~~FRiG~IG~V~~~di~~l~~  357 (366)
T TIGR02326       316 DFYQRLKEQGFVIYP-GKVSQVDTFRIGNIGDVDAADIERLVT  357 (366)
T ss_pred             HHHHHHHHCCCEECC-CCCCCCCCEECCCCCCCCHHHHHHHHH
T ss_conf             999999767817627-610456621116767638899999999


No 152
>COG4721 ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]
Probab=35.00  E-value=16  Score=15.72  Aligned_cols=57  Identities=32%  Similarity=0.515  Sum_probs=31.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH--HHHHHCCCCCC
Q ss_conf             887776588887210558102257677874368775045787568638889988874588--66543087211
Q gi|254780970|r   93 HNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIA--GYSNSFGVPTV  163 (737)
Q Consensus        93 HNhPs~i~P~~GAaTg~gG~iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~~--~ygN~~G~P~v  163 (737)
                      -=||-+.+||-+-      ++--+-+|+| |++.+-   .   .+|. .-++.+++++..  -++|+||+|++
T Consensus        37 ~lhp~ale~~~~~------i~~GiW~maa-vi~~l~---I---pkpG-aAl~~Ev~Aa~ve~ll~sqfgi~ti   95 (192)
T COG4721          37 LLHPLALEPFANE------ILFGIWFMAA-VIAALF---I---PKPG-AALIGEVLAALVEVLLGSQFGIGTI   95 (192)
T ss_pred             HCCHHHCCCCCCC------HHHHHHHHHH-HHEEEE---E---CCCC-HHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             4162421755430------3787999987-770156---2---6872-8899999999999997587772699


No 153
>pfam02244 Propep_M14 Carboxypeptidase activation peptide. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase, and is responsible for modulation of folding and activity of the pro-enzyme.
Probab=34.51  E-value=28  Score=14.06  Aligned_cols=25  Identities=8%  Similarity=0.101  Sum_probs=14.5

Q ss_pred             EEEECHHHHHHHHHHHHHCCCCEEE
Q ss_conf             9999688099899999857984999
Q gi|254780970|r  674 VVCISPENQDLVMSEANNKNIPLRY  698 (737)
Q Consensus       674 ii~V~~~~~~~~~~~~~~~gi~~~~  698 (737)
                      =+-|+|.+...|...++.+++++.+
T Consensus        38 dv~V~p~~~~~f~~~L~~~~I~~~v   62 (75)
T pfam02244        38 DIMVPPHKLADFEALLEQNGISYEV   62 (75)
T ss_pred             EEEECHHHHHHHHHHHHHCCCEEEE
T ss_conf             9996999999999999986984899


No 154
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=34.36  E-value=22  Score=14.73  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=14.7

Q ss_pred             CCCCCHHHHHHHHHCCCCCCEE
Q ss_conf             7752011122332014775289
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGIT  288 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~~  288 (737)
                      +|+|||.+.+.+...++|+|--
T Consensus        30 VGaGGLGs~~a~~La~aGVG~l   51 (337)
T PRK12475         30 IGAGALGAANAEALVRAGIGKL   51 (337)
T ss_pred             ECCCHHHHHHHHHHHHCCCCEE
T ss_conf             9777778999999998289869


No 155
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=34.25  E-value=14  Score=16.01  Aligned_cols=32  Identities=19%  Similarity=0.167  Sum_probs=16.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       174 sP~NPTG~v~s~~~l~~l~~~a~~~~i~iisD  205 (394)
T TIGR03538       174 SPGNPTGAVLSLETLKKLIELADQYGFIIASD  205 (394)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             99999897778799999999973267699980


No 156
>PRK07682 hypothetical protein; Validated
Probab=33.62  E-value=13  Score=16.25  Aligned_cols=38  Identities=16%  Similarity=0.278  Sum_probs=22.3

Q ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             225767787436877504578756863888998887458
Q gi|254780970|r  113 LRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGI  151 (737)
Q Consensus       113 iRDi~~~Ga~p~a~~~~l~~g~~~~p~~~~~~~~~~~G~  151 (737)
                      ||.++...+++.-+. .|..|+|+-|-+..+.+.+.+-+
T Consensus         9 ir~~~~~~~~~~dvi-~l~vgdpdf~~p~~i~ea~~~~~   46 (378)
T PRK07682          9 IRKFFDLAANMEGVI-SLGVGEPDFVTPWNVREASIRSL   46 (378)
T ss_pred             HHHHHHHHHCCCCCE-ECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             999999872899828-89999899987899999999998


No 157
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=33.36  E-value=21  Score=14.87  Aligned_cols=45  Identities=18%  Similarity=0.176  Sum_probs=29.4

Q ss_pred             CCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCHHHHHHCCCC
Q ss_conf             7752011122332014775289962022046678999898617888
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQ  312 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~~l~~~ei~~sEsQ  312 (737)
                      +|+|||.+.+......+|+|--.=.|.=.+...+|. ..++++|+.
T Consensus       144 vG~GGLGs~~a~yLA~aGVG~i~lvD~D~Ve~SNL~-RQil~~~~d  188 (379)
T PRK08762        144 IGAGGLGSPAAFYLAAAGVGHLRIADHDVVDRSNLQ-RQILHTEDS  188 (379)
T ss_pred             ECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH-HCCCCCHHH
T ss_conf             888755799999999837975897628861334501-125746433


No 158
>PRK06507 consensus
Probab=33.09  E-value=25  Score=14.33  Aligned_cols=32  Identities=13%  Similarity=-0.014  Sum_probs=15.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCC
Q ss_conf             6668621346999999998522102-8866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQIL-DFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~l-gipivgG  529 (737)
                      +|.+|-..---.+-++.+.+.|++. ++-|++-
T Consensus       172 ~P~NPTG~v~s~~~l~~i~~~a~~~~~v~visD  204 (400)
T PRK06507        172 FPNNPTGAACTRAEMAAIAEVMLRHPHVWIMTD  204 (400)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCC
T ss_conf             992931288647799999986653168214056


No 159
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=32.89  E-value=29  Score=13.88  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=10.3

Q ss_pred             CCCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf             966214788998619998999999
Q gi|254780970|r    1 MSKPSPILEILTAHGLTKDECDQI   24 (737)
Q Consensus         1 ~~~~~~~~e~~~~~gL~~~e~~~i   24 (737)
                      |.+.+-+.++..+.||+..|.+.+
T Consensus         1 M~K~eLi~~ia~~~~ltk~~a~~~   24 (90)
T PRK10664          1 MNKSQLIDKIAAGADISKAAAGRA   24 (90)
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             978999999998709999999999


No 160
>PRK07681 aspartate aminotransferase; Provisional
Probab=32.73  E-value=16  Score=15.68  Aligned_cols=25  Identities=20%  Similarity=0.161  Sum_probs=16.9

Q ss_pred             CEEEEECHHHHHHHHHHHHHCCCCE
Q ss_conf             1899996880998999998579849
Q gi|254780970|r  672 RYVVCISPENQDLVMSEANNKNIPL  696 (737)
Q Consensus       672 r~ii~V~~~~~~~~~~~~~~~gi~~  696 (737)
                      |+-++.+.+..++.++.++++||..
T Consensus       365 Rl~f~~~~e~l~eal~RLk~a~~~~  389 (399)
T PRK07681        365 RIALVQDKEVLQQVVENIRNSGIFA  389 (399)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCH
T ss_conf             9997188999999999998888656


No 161
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=32.55  E-value=25  Score=14.34  Aligned_cols=21  Identities=29%  Similarity=0.396  Sum_probs=13.8

Q ss_pred             CCCCCHHHHHHHHHCCCCCCE
Q ss_conf             775201112233201477528
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGI  287 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~  287 (737)
                      +|+|||.+.+.+...++|+|-
T Consensus        30 vGaGGLGs~~a~~La~aGVG~   50 (339)
T PRK07688         30 IGAGALGTANAEMLVRAGVGK   50 (339)
T ss_pred             ECCCHHHHHHHHHHHHCCCCE
T ss_conf             877777799999999848982


No 162
>PRK05764 aspartate aminotransferase; Provisional
Probab=32.35  E-value=15  Score=15.83  Aligned_cols=32  Identities=13%  Similarity=0.073  Sum_probs=18.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|-..---.+-++.+.+.|++.++.|+.-
T Consensus       172 ~P~NPtG~v~s~~~l~~l~~~a~~~~i~ii~D  203 (389)
T PRK05764        172 SPSNPTGAVYSKEELEAIADVAVEHDIWVLSD  203 (389)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             99899886757799999999988635327510


No 163
>TIGR00366 TIGR00366 conserved hypothetical protein TIGR00366; InterPro: IPR006161    This is a family of conserved hypothetical proteins of no clearly defined function, although they may act as short chain fatty acid transporters.; GO: 0015635 short-chain fatty acid transporter activity, 0015912 short-chain fatty acid transport, 0016020 membrane.
Probab=32.13  E-value=15  Score=15.87  Aligned_cols=27  Identities=19%  Similarity=0.146  Sum_probs=11.7

Q ss_pred             CCCCHHHHHHHHHHCCCCCCHHHHHHHCC
Q ss_conf             72558899999850732101035653112
Q gi|254780970|r  394 SDEDCTKSLLKLLSSPNLSSRRWVYEQYD  422 (737)
Q Consensus       394 ~~~d~~~~l~~vL~~pnV~SK~~i~~qyD  422 (737)
                      ++..+-..+.-.|.--..+-  |-|+++=
T Consensus       267 E~S~~L~~li~~LG~~ylg~--yFy~~Gf  293 (463)
T TIGR00366       267 ENSRLLALLIGALGIIYLGM--YFYEKGF  293 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHCCCC
T ss_conf             25689999999998999888--7741663


No 164
>PRK06207 aspartate aminotransferase; Provisional
Probab=32.05  E-value=21  Score=14.91  Aligned_cols=32  Identities=9%  Similarity=0.101  Sum_probs=18.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      ||.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       187 nP~NPTG~v~s~e~l~~l~~la~~~~i~visD  218 (406)
T PRK06207        187 NPNNPAGVVYSPEEIAQIAALARRYGATVIAD  218 (406)
T ss_pred             CCCCCCCHHCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf             99798572133999999999875579599996


No 165
>PRK05463 hypothetical protein; Provisional
Probab=31.81  E-value=31  Score=13.77  Aligned_cols=53  Identities=17%  Similarity=0.218  Sum_probs=36.5

Q ss_pred             EEEEECCCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             999954675889998887097131122121044310002586443443210146650114
Q gi|254780970|r  316 LMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAPEYD  375 (737)
Q Consensus       316 ~~~v~~~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~v~dlp~~~L~~~~P~~~  375 (737)
                      +++++++..+.|+..|++.-.+|-+|+.. +-+......-+   .+.++.   .+.|+|.
T Consensus        39 lvILP~~~A~DF~~FC~rNpkpCPLl~~s-e~G~~~~~~la---~~~DiR---TD~P~Y~   91 (264)
T PRK05463         39 LVILPKDWAYDFLLFCQRNPKPCPLLDVS-EPGSPRLPLLG---ADADIR---TDVPRYR   91 (264)
T ss_pred             EEEEEHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCCCC---CCCCCC---CCCCCEE
T ss_conf             99930999999999995599887656513-79997761226---775400---3787428


No 166
>TIGR02662 dinitro_DRAG ADP-ribosyl-[dinitrogen reductase] hydrolase; InterPro: IPR013479   This entry represents ADP-ribosyl-dinitrogen reductase hydrolase (3.2.2.24 from EC), also known as dinitrogenase reductase activating glycohydrolase (DraG). It is involved in the regulation of nitrogen fixation activity by the reversible ADP-ribosylation of the dinitrogenase reductase component of the nitrogenase enzyme complex . The ADP-ribosyltransferase protein DraT acts to inactivate dinitrogen reductase by adding an ADP-ribose group to this enzyme. DraG, in contrast, activates this enzyme by removing the attached ADP-ribose group. .
Probab=31.61  E-value=15  Score=15.96  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=8.1

Q ss_pred             CHHHHHHHCCCCCCCCCCCCC
Q ss_conf             103565311210001100001
Q gi|254780970|r  413 SRRWVYEQYDTMIQSNSIQLP  433 (737)
Q Consensus       413 SK~~i~~qyD~~V~g~tv~~P  433 (737)
                      +++.| ++|=+.-|.+++..|
T Consensus        98 ~RRGI-r~f~~~rqsG~~~~P  117 (295)
T TIGR02662        98 CRRGI-RRFMLHRQSGTLEAP  117 (295)
T ss_pred             CCHHH-HHHHHCCCCCCEECC
T ss_conf             50445-875540467743166


No 167
>pfam06032 DUF917 Protein of unknown function (DUF917). This family consists of hypothetical bacterial and archaeal proteins of unknown function.
Probab=31.48  E-value=22  Score=14.74  Aligned_cols=55  Identities=29%  Similarity=0.518  Sum_probs=31.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCC
Q ss_conf             798999888999874011383011034775201112233201477528996202204667
Q gi|254780970|r  240 GDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE  299 (737)
Q Consensus       240 gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~G~~i~l~~vp~~~~  299 (737)
                      |||+..+.+.+..++....=.+....++....+.+.++-|...     .+..+|+|..++
T Consensus        22 Gdp~~~~l~~~~~l~~~~~v~lv~~del~dd~~vv~v~~~GaP-----~v~~Eklp~g~e   76 (352)
T pfam06032        22 GDPYIGKLLLRAALKEGGPVELVSPDELPDDDLVVTVGMMGAP-----TVSIEKLPSGDE   76 (352)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCEEEEEEECCCC-----CCHHCCCCCCHH
T ss_conf             7479999999999975997699747565988889997453677-----101124778358


No 168
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase; InterPro: IPR006363   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobJ and CbiH precorrin-3B C(17)-methyltransferase (2.1.1.131 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyses the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1) . In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.   These proteins belong to the superfamily of tetrapyrrole (corrin/porphyrin) methylases (IPR000878 from INTERPRO), which includes methylases that use S-adenosylmethionine (S-AdoMet) in the methylation of diverse substrates. A number of other methylases in the cobalamin biosynthesis pathway also belong to this domain superfamily (precorrin-3 methylase, IPR012203 from INTERPRO, IPR012059 from INTERPRO, IPR012382 from INTERPRO, IPR012797 from INTERPRO and others), and a fusion of precorrin-3B C17-methyltransferases with precorrin isomerase is represented by IPR014422 from INTERPRO.   Nomenclature note: precorrin-3B C17-methyltransferase is one of the two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.133 from EC). ; GO: 0008168 methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=31.42  E-value=31  Score=13.72  Aligned_cols=179  Identities=17%  Similarity=0.239  Sum_probs=98.7

Q ss_pred             EECCCC-HHHHHHCCCCC-CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             211211-35543112256-8977999657656444104666677728653334443326798999888999874011383
Q gi|254780970|r  183 AAGIAK-TNAIFSSKARG-IGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDA  260 (737)
Q Consensus       183 ~~Gi~~-~~~~~~~~~~~-~Gd~ii~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~  260 (737)
                      .+|||| .+..++.++++ -.+.=+++|=.||.+=|.       .+-++.+ ++  +.-|+-..=.|.-+|+-.+.+-+-
T Consensus         3 vvGiGPG~~~~~T~~A~~AL~~ad~ivGY~~Y~~~~~-------~~~~~~~-~~--~~~~M~~E~~Ra~~Ai~~A~~G~~   72 (254)
T TIGR01466         3 VVGIGPGAEELMTPEAKEALAEADVIVGYKTYLRLIE-------DLLDGKK-EV--ITSGMREEIERAELAIELAKEGKT   72 (254)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHCCEEEEECCHHHHHH-------HHCCCCC-EE--EECCCCHHHHHHHHHHHHHHCCCE
T ss_conf             8971888910168899999874888883001267787-------6468962-48--767796278999999999860994


Q ss_pred             --CHHCCCCCCCCHHHHHHHHHCCCCC-CEEEEEHHHC------------------------CCCCCCCHHHHHH-----
Q ss_conf             --0110347752011122332014775-2899620220------------------------4667899989861-----
Q gi|254780970|r  261 --VIAIQDMGAAGLTCSAIEMGNQGNL-GITLDLDKVP------------------------TCEEGMTAYEMML-----  308 (737)
Q Consensus       261 --i~~~~D~gaGGl~~a~~Ema~~~~~-G~~i~l~~vp------------------------~~~~~l~~~ei~~-----  308 (737)
                        +.|==|.|==|++..+-|+.++.+. =..+|.+=||                        +.| -|.||++..     
T Consensus        73 VAlvSSGDpGiYgMA~l~~E~~~~~~~~~~~~dieV~PGiTA~~aAAs~LGaPL~HDFc~ISLSD-lLtPw~~Ie~R~~a  151 (254)
T TIGR01466        73 VALVSSGDPGIYGMAALVFEILEKKGLEDVAIDIEVIPGITAASAAASLLGAPLGHDFCVISLSD-LLTPWPVIEKRLRA  151 (254)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHHH
T ss_conf             89993687527888999999986238997723479858833789999973363113788887455-56787899999999


Q ss_pred             -CCCCCEEEEEE-------ECCCHHHHHHHHHHHCCEEECCCCEEEC----CCCCCC---CCCCCC------CCCCCCCC
Q ss_conf             -78885089999-------5467588999888709713112212104----431000---258644------34432101
Q gi|254780970|r  309 -SESQERMLMIL-------NPEKQHKAQEILNKWGLHFSIIGITTND----KLFRVI---HRGEEV------ANLPIKAL  367 (737)
Q Consensus       309 -sEsQeR~~~~v-------~~~~~~~~~~i~~~~~~~~~~iG~vt~~----~~~~v~---~~g~~v------~dlp~~~L  367 (737)
                       .|+  =|++++       .++++-++++|+.++.-+-+.||-|-+=    ..+.++   .=.+..      +|+-.-.|
T Consensus       152 AA~a--DFVia~YNP~S~~R~~~~~~a~eIL~~~r~~~TpVGiVr~AgR~~e~v~ittL~~l~~~~~~~~~l~DM~T~vi  229 (254)
T TIGR01466       152 AAEA--DFVIAIYNPRSKRRKEQLRRAVEILLEHRKPDTPVGIVRNAGREDEEVEITTLSELDEELEKELDLIDMLTTVI  229 (254)
T ss_pred             HHCC--CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEHHHCCCCCCCCEEEECCEEEEE
T ss_conf             8449--92899974898765446999999999856899728988745899854899764330001110133443458999


Q ss_pred             CCCCCEE
Q ss_conf             4665011
Q gi|254780970|r  368 SDEAPEY  374 (737)
Q Consensus       368 ~~~~P~~  374 (737)
                      .||.--|
T Consensus       230 iGN~~T~  236 (254)
T TIGR01466       230 IGNSETY  236 (254)
T ss_pred             ECCCCCE
T ss_conf             7178525


No 169
>PRK06107 aspartate aminotransferase; Provisional
Probab=31.36  E-value=22  Score=14.79  Aligned_cols=18  Identities=0%  Similarity=0.137  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHC-CCCCCCC
Q ss_conf             99998522102-8866544
Q gi|254780970|r  512 VKGIREACQIL-DFPIVSG  529 (737)
Q Consensus       512 v~gl~d~c~~l-gipivgG  529 (737)
                      ++.+.+.|.+. ++.|++-
T Consensus       188 l~~i~~i~~~~~~i~iisD  206 (402)
T PRK06107        188 LRALADVLLRHPHVLVLTD  206 (402)
T ss_pred             HHHHHHHHHHCCCCEEEEE
T ss_conf             9999887752489328622


No 170
>PRK06348 aspartate aminotransferase; Provisional
Probab=31.20  E-value=15  Score=15.90  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=19.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             566686213469999999985221028866544
Q gi|254780970|r  497 GNPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       497 ~~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      .+|.+|-..---.+-++.+.+.|++.++.+++-
T Consensus       169 ~~P~NPTG~v~~~e~l~~l~~la~~~~i~visD  201 (383)
T PRK06348        169 NSPNNPTGAVFSKETLEEIAKVAIENDLVIISD  201 (383)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEC
T ss_conf             999798888777789999997653068699851


No 171
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=31.16  E-value=16  Score=15.66  Aligned_cols=43  Identities=30%  Similarity=0.559  Sum_probs=27.6

Q ss_pred             CCCHHHHHHCCCCCEEEEEEECCCHHHH-HHHHHHHCCEEECCC
Q ss_conf             8999898617888508999954675889-998887097131122
Q gi|254780970|r  300 GMTAYEMMLSESQERMLMILNPEKQHKA-QEILNKWGLHFSIIG  342 (737)
Q Consensus       300 ~l~~~ei~~sEsQeR~~~~v~~~~~~~~-~~i~~~~~~~~~~iG  342 (737)
                      ||--.|.+..+--+|++++||+.-..++ .++.+|++++++++.
T Consensus       186 GLIl~ell~rgra~RvLIvvP~~L~~QW~~EL~~KF~L~f~i~D  229 (955)
T PRK04914        186 GLIIHQQLLTGRAERVLIIVPETLQHQWLVEMLRRFNLRFSLFD  229 (955)
T ss_pred             HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf             99999999748777799992779989999999998399809955


No 172
>pfam01988 VIT1 VIT family. This family includes the vacuolar Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron transporter VIT1.
Probab=31.07  E-value=32  Score=13.68  Aligned_cols=21  Identities=14%  Similarity=0.204  Sum_probs=9.3

Q ss_pred             CHHHHHHHHHHHCCEEECCCC
Q ss_conf             758899988870971311221
Q gi|254780970|r  323 KQHKAQEILNKWGLHFSIIGI  343 (737)
Q Consensus       323 ~~~~~~~i~~~~~~~~~~iG~  343 (737)
                      ..+++.+++++.|++-...-+
T Consensus        81 e~~el~~i~~~~Gl~~~~a~~  101 (210)
T pfam01988        81 EREELAQIYRARGLSEELARQ  101 (210)
T ss_pred             HHHHHHHHHHHCCCCHHHHHH
T ss_conf             999999999874999899999


No 173
>PRK07337 aminotransferase; Validated
Probab=31.07  E-value=13  Score=16.23  Aligned_cols=17  Identities=18%  Similarity=0.053  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHCCCCCCC
Q ss_conf             99998522102886654
Q gi|254780970|r  512 VKGIREACQILDFPIVS  528 (737)
Q Consensus       512 v~gl~d~c~~lgipivg  528 (737)
                      ++.+.+.|++.++.+++
T Consensus       185 l~~i~~~a~~~~~~vIs  201 (388)
T PRK07337        185 LRRIVEAVRARGGFTIV  201 (388)
T ss_pred             HHHHHHHHHCCCEEEEC
T ss_conf             43355443145808845


No 174
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB; InterPro: IPR012730    This entry describes the molybdopterin biosynthesis protein MoeB in Escherichia coli and related species. MoeB and MoaD are involved in molybdenum cofactor biosynthesis, an evolutionarily conserved pathway. The MoeB enzyme covalently modifies the molybdopterin synthase MoaD by sulphurylation. The crystal structure of the complex between the E. coli MoeB and MoaD proteins reveals a MoeB(2)-MoaD(2) heterotetramer in which the MoeB subunits form a mainly hydrophobic dimer .   MoeB is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (IPR000594 from INTERPRO). ; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=30.96  E-value=26  Score=14.25  Aligned_cols=43  Identities=7%  Similarity=-0.104  Sum_probs=17.2

Q ss_pred             HHHHHHHHCCEEECCCCEEECCCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             999888709713112212104431000-2586443443210146
Q gi|254780970|r  327 AQEILNKWGLHFSIIGITTNDKLFRVI-HRGEEVANLPIKALSD  369 (737)
Q Consensus       327 ~~~i~~~~~~~~~~iG~vt~~~~~~v~-~~g~~v~dlp~~~L~~  369 (737)
                      +..-|-+..+|-.-=.-+.=+|.+.|+ |..++|++-.++.||+
T Consensus       131 Ln~~Cf~~K~PLvSgaAIRmEG~v~VFtY~~~~PcY~clS~LFg  174 (240)
T TIGR02355       131 LNRQCFAAKVPLVSGAAIRMEGQVSVFTYQDDEPCYRCLSKLFG  174 (240)
T ss_pred             HHHHHHHCCCCCEEHHHHHCCCEEEEEEECCCCCHHHHHHHHHC
T ss_conf             75777623898000122100451789852597871889999840


No 175
>TIGR00987 himA integration host factor, alpha subunit; InterPro: IPR005684   Integration host factor (IHF) is a heterodimeric protein consisting of alpha and beta (IPR005685 from INTERPRO) subunits. IHF binds the minor groove of DNA in a sequence-specific manner to induce a large bend. This bending stabilises distinct DNA conformations that are required during several bacterial processes, such as recombination, transposition, replication and transcription .; GO: 0003677 DNA binding, 0005694 chromosome.
Probab=30.66  E-value=32  Score=13.64  Aligned_cols=15  Identities=27%  Similarity=0.534  Sum_probs=7.0

Q ss_pred             HHHHHCCCCHHHHHH
Q ss_conf             899861999899999
Q gi|254780970|r    9 EILTAHGLTKDECDQ   23 (737)
Q Consensus         9 e~~~~~gL~~~e~~~   23 (737)
                      .++.++||+..|-..
T Consensus        10 ~~f~~~GLs~~ea~~   24 (96)
T TIGR00987        10 ALFRELGLSKREAKE   24 (96)
T ss_pred             HHHHHHCCCHHHHHH
T ss_conf             999982888557789


No 176
>PRK08362 consensus
Probab=30.62  E-value=15  Score=15.93  Aligned_cols=16  Identities=6%  Similarity=0.104  Sum_probs=8.6

Q ss_pred             CCCHHHHHHHHHHHCC
Q ss_conf             4675889998887097
Q gi|254780970|r  321 PEKQHKAQEILNKWGL  336 (737)
Q Consensus       321 ~~~~~~~~~i~~~~~~  336 (737)
                      ++.++++.++|+++++
T Consensus       179 ~~~l~~i~~~a~~~~~  194 (389)
T PRK08362        179 KKDLEEIADFAVEHDL  194 (389)
T ss_pred             HHHHHHHHHHHHHCCE
T ss_conf             9999999999875495


No 177
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=29.84  E-value=33  Score=13.55  Aligned_cols=59  Identities=19%  Similarity=0.256  Sum_probs=32.3

Q ss_pred             CCCCCHHHHHHHHHCCCCCCEE--EEEHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHC
Q ss_conf             7752011122332014775289--96202204667899989861788850899995467588999888709
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGIT--LDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWG  335 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~~--i~l~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~  335 (737)
                      +|+|||.|.+.++..++|+|--  +|-|+|  ...+|.. .++..|.       +-+.+.+...+.+++-+
T Consensus         5 vG~GGLG~~~a~~La~aGvg~i~lvD~D~V--e~SNL~R-Q~~~~~d-------iG~~Ka~~a~~~l~~iN   65 (174)
T cd01487           5 AGAGGLGSNIAVLLARSGVGNLKLVDFDVV--EPSNLNR-QQYFLSQ-------IGEPKVEALKENLREIN   65 (174)
T ss_pred             ECCCHHHHHHHHHHHHHCCCEEEEEECCCC--CCCCHHC-CHHHHHH-------CCCHHHHHHHHHHHHHC
T ss_conf             876788999999999818973999989946--6644301-3247774-------79749999999999879


No 178
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992    This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=29.64  E-value=22  Score=14.74  Aligned_cols=19  Identities=37%  Similarity=0.651  Sum_probs=12.5

Q ss_pred             HHHHHHHHCCCCCCCCCCC
Q ss_conf             9985221028866544320
Q gi|254780970|r  514 GIREACQILDFPIVSGNVS  532 (737)
Q Consensus       514 gl~d~c~~lgipivgGkvS  532 (737)
                      -|++||.+|++|||-|++-
T Consensus       181 nLk~fi~eLDvPVv~Ggv~  199 (376)
T TIGR01304       181 NLKKFIQELDVPVVAGGVV  199 (376)
T ss_pred             HHHHHHHHCCCCEEECCCC
T ss_conf             4888975489887883853


No 179
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=29.37  E-value=34  Score=13.49  Aligned_cols=46  Identities=22%  Similarity=0.415  Sum_probs=27.0

Q ss_pred             HHHHHCCCCCEEEEEEEC-CCHHHHHHHHHHHCCEEECCCCEEECCCCCC
Q ss_conf             898617888508999954-6758899988870971311221210443100
Q gi|254780970|r  304 YEMMLSESQERMLMILNP-EKQHKAQEILNKWGLHFSIIGITTNDKLFRV  352 (737)
Q Consensus       304 ~ei~~sEsQeR~~~~v~~-~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v  352 (737)
                      ++-|.++.|-..++-++. +.+..+.+.+++.++++.+|   .+.++-.+
T Consensus        42 ~~~W~~~G~~KIvlkv~~e~~L~~l~~~a~~~gl~~~~V---~DAG~Tei   88 (116)
T PRK04322         42 FEEWLNEGQKKVVLKVNSEEELLELKKKAERLGLPTALI---RDAGLTQI   88 (116)
T ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE---ECCCCCCC
T ss_conf             999995799479998599999999999999879968999---76887353


No 180
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=28.93  E-value=34  Score=13.44  Aligned_cols=20  Identities=25%  Similarity=0.194  Sum_probs=7.1

Q ss_pred             CCHHHHHHHHHCCCCHHHHH
Q ss_conf             62147889986199989999
Q gi|254780970|r    3 KPSPILEILTAHGLTKDECD   22 (737)
Q Consensus         3 ~~~~~~e~~~~~gL~~~e~~   22 (737)
                      +.+-+.++..+.||+..|.+
T Consensus         3 K~eLi~~ia~~~~~sk~~~~   22 (90)
T PRK10753          3 KTQLIDVIADKAELSKTQAK   22 (90)
T ss_pred             HHHHHHHHHHHHCCCHHHHH
T ss_conf             89999999987398999999


No 181
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=28.87  E-value=13  Score=16.34  Aligned_cols=37  Identities=8%  Similarity=-0.078  Sum_probs=23.8

Q ss_pred             CCCHHHHHHHHHHHCCC-C--CHHHHHHHHHHHCCCCCCC
Q ss_conf             99989999999995789-7--1889999853300110744
Q gi|254780970|r   15 GLTKDECDQIIHILKRQ-P--TLTEIGIISAMWNEHCSYK   51 (737)
Q Consensus        15 gL~~~e~~~i~~~l~R~-P--t~~El~~~~~~wSEHC~~k   51 (737)
                      -++.+|++++.+.|... -  .--...-|.+.+++.+.-|
T Consensus         8 ~~~~~e~~~v~~~l~sg~~~~~G~~v~~fE~~~a~~~g~~   47 (375)
T PRK11706          8 PVVGTELDYIQEAMSSGKLSGDGGFTRRCQQWLEQRFGCA   47 (375)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             9998999999999970987689979999999999997849


No 182
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and 
Probab=28.87  E-value=34  Score=13.44  Aligned_cols=32  Identities=3%  Similarity=0.016  Sum_probs=22.0

Q ss_pred             CCCCCCEEEEECHHHHHHHHHHHHHCCCCEEE
Q ss_conf             98832189999688099899999857984999
Q gi|254780970|r  667 GEDQGRYVVCISPENQDLVMSEANNKNIPLRY  698 (737)
Q Consensus       667 sEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~  698 (737)
                      +-+|...+++|+.+..+.+.+++++.|+...+
T Consensus        34 NI~P~~~vfTV~~~~~~ka~~iL~~lg~~p~v   65 (67)
T cd04914          34 NVSPEEVIFTVDGEVAEKAVDILEKMGLDPSV   65 (67)
T ss_pred             EECCCCEEEEECHHHHHHHHHHHHHCCCCCEE
T ss_conf             86677479980778899999999986998375


No 183
>PRK08361 aspartate aminotransferase; Provisional
Probab=28.85  E-value=16  Score=15.66  Aligned_cols=20  Identities=20%  Similarity=0.295  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999985221028866544
Q gi|254780970|r  510 HSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       510 ~av~gl~d~c~~lgipivgG  529 (737)
                      +-++.+.+.|++.++.|++-
T Consensus       185 e~l~~l~~la~~~~i~ii~D  204 (390)
T PRK08361        185 ETAKAIADIAEDYNIYILSD  204 (390)
T ss_pred             HHHHHHHHHHHHCCCEECCH
T ss_conf             88889999998639553470


No 184
>PRK08912 hypothetical protein; Provisional
Probab=28.78  E-value=15  Score=15.89  Aligned_cols=32  Identities=19%  Similarity=0.062  Sum_probs=18.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|-..---.+-++.+.+.|++.++.+++-
T Consensus       167 ~P~NPTG~v~s~e~l~~l~~~a~~~~i~vi~D  198 (387)
T PRK08912        167 NPLNPAGKVFPREDLALLAEFCQRHDAVAICD  198 (387)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEC
T ss_conf             99898885686999999999886579799802


No 185
>pfam01726 LexA_DNA_bind LexA DNA binding domain. This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins. The aligned region contains a variant form of the helix-turn-helix DNA binding motif. This domain is found associated with pfam00717 the auto-proteolytic domain of LexA EC:3.4.21.88.
Probab=28.59  E-value=35  Score=13.40  Aligned_cols=37  Identities=24%  Similarity=0.344  Sum_probs=26.8

Q ss_pred             HHHHHHHH---CCCCCHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHCC
Q ss_conf             99999995---78971889999853300110744588---9997512069
Q gi|254780970|r   21 CDQIIHIL---KRQPTLTEIGIISAMWNEHCSYKSSK---KWLRTLPTTG   64 (737)
Q Consensus        21 ~~~i~~~l---~R~Pt~~El~~~~~~wSEHC~~k~~~---~~l~~~~~~~   64 (737)
                      +++|+++.   |..||--|+.       +||.+||..   .+|+.+...|
T Consensus        12 l~~I~~~~~~~G~~Pt~rEI~-------~~~g~~S~s~v~~~l~~Le~kG   54 (65)
T pfam01726        12 LDFIKASIEETGYPPSRREIA-------QALGLRSPNAAEEHLKALERKG   54 (65)
T ss_pred             HHHHHHHHHHHCCCCCHHHHH-------HHHCCCCHHHHHHHHHHHHHCC
T ss_conf             999999999828898799999-------9938998099999999999983


No 186
>PRK05794 consensus
Probab=28.54  E-value=20  Score=14.99  Aligned_cols=32  Identities=16%  Similarity=0.104  Sum_probs=16.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|-..---.+-++.+.+.|++.++.+++-
T Consensus       171 ~P~NPtG~v~s~~~l~~l~~la~~~~i~visD  202 (397)
T PRK05794        171 SPNNPTGTVYSKEELEEIAKFAKEHDLFIISD  202 (397)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCEEEEECH
T ss_conf             99898782435067999997654103688433


No 187
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD; InterPro: IPR012760   The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes.    With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , .   This entry represents the C-terminal region of sigma 70 (RpoD) which contains the well-conserved regions 2, 3 and 4. Region 2 of sigma-70 is the most conserved region of the entire protein. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core-binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime , . The aromatic residues of the recognition helix, found at the C terminus of this domain are thought to mediate strand separation, thereby allowing transcription initiation , . Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme .Region 4 is involved in binding to the -35 promoter element via a helix-turn-helix motif .; GO: 0003677 DNA binding, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=27.69  E-value=36  Score=13.30  Aligned_cols=21  Identities=10%  Similarity=0.384  Sum_probs=10.4

Q ss_pred             HHHHHHHH-HHHHHHHHHCCCCC
Q ss_conf             34699999-99985221028866
Q gi|254780970|r  505 MGQFVHSV-KGIREACQILDFPI  526 (737)
Q Consensus       505 ~~ql~~av-~gl~d~c~~lgipi  526 (737)
                      || ..+|+ ++++|=+|..-|||
T Consensus        59 WW-IRQAITRAIADQARtIRiPV   80 (240)
T TIGR02393        59 WW-IRQAITRAIADQARTIRIPV   80 (240)
T ss_pred             HH-HHHHHHHHHHHCCCCCCCCH
T ss_conf             89-99999998875137201103


No 188
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=27.68  E-value=16  Score=15.72  Aligned_cols=32  Identities=16%  Similarity=0.136  Sum_probs=19.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      ||.+|-..---.+-++.+.+.|++.++.+++-
T Consensus       173 ~P~NPTG~v~s~~~l~~i~~~a~~~~i~lisD  204 (388)
T PRK07366        173 YPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHD  204 (388)
T ss_pred             CCCCCCCEEEEHHHHHHHHHHHHHCCEEEECC
T ss_conf             89898466803888888999874055078622


No 189
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=27.63  E-value=4.1  Score=19.73  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=20.5

Q ss_pred             CCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             675889998887097131122121044310002586443443
Q gi|254780970|r  322 EKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLP  363 (737)
Q Consensus       322 ~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~v~dlp  363 (737)
                      =|+.++.++++++++..+...+  .=+.+.++.+|+++...|
T Consensus        86 vDv~r~p~vA~ky~I~~s~~s~--qlPT~iLF~~G~Ev~R~P  125 (152)
T cd02962          86 IDIGRFPNVAEKFRVSTSPLSK--QLPTIILFQGGKEVARRP  125 (152)
T ss_pred             EECCCCHHHHHHCCCCCCCCCC--CCCEEEEEECCEEEEECC
T ss_conf             8766374069882867532336--587599974889945637


No 190
>PRK05942 aspartate aminotransferase; Provisional
Probab=27.42  E-value=19  Score=15.16  Aligned_cols=32  Identities=9%  Similarity=0.038  Sum_probs=15.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      ||.+|-..---.+.++.+.+.|++.++.|++-
T Consensus       178 ~P~NPTG~v~~~e~l~~i~~~a~~~~i~vIsD  209 (394)
T PRK05942        178 YPSNPTTATAPREFFEEIVAFARKYEILLVHD  209 (394)
T ss_pred             CCCCCCCHHCCHHHHHHHHHHHHCCCCEEEEC
T ss_conf             89881012201999999999885178679703


No 191
>PRK07411 hypothetical protein; Validated
Probab=27.36  E-value=36  Score=13.26  Aligned_cols=20  Identities=20%  Similarity=0.405  Sum_probs=13.7

Q ss_pred             CCCCCHHHHHHHHHCCCCCC
Q ss_conf             77520111223320147752
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLG  286 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G  286 (737)
                      +|+|||.|.+..-..++|+|
T Consensus        44 vG~GGLG~p~~~yLaaaGvG   63 (390)
T PRK07411         44 IGTGGLGSPLLLYLAAAGIG   63 (390)
T ss_pred             ECCCHHHHHHHHHHHHCCCC
T ss_conf             88872379999999983897


No 192
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT,  Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein 
Probab=27.35  E-value=12  Score=16.52  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=15.5

Q ss_pred             CEEEEECH---HHHHHHHHHHHHCCCCEE
Q ss_conf             18999968---809989999985798499
Q gi|254780970|r  672 RYVVCISP---ENQDLVMSEANNKNIPLR  697 (737)
Q Consensus       672 r~ii~V~~---~~~~~~~~~~~~~gi~~~  697 (737)
                      .+.+.+++   .+.+.+.+.++++||.+.
T Consensus       269 ~~~i~l~~~~~~~R~~l~~~L~~~gI~~~  297 (352)
T cd00616         269 LYVIRLDPEAGESRDELIEALKEAGIETR  297 (352)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHCCCCEE
T ss_conf             99999865021059999999998799858


No 193
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=27.26  E-value=36  Score=13.25  Aligned_cols=16  Identities=19%  Similarity=0.455  Sum_probs=7.1

Q ss_pred             HHHHHH-HHHHHHCCCC
Q ss_conf             999999-8522102886
Q gi|254780970|r  510 HSVKGI-REACQILDFP  525 (737)
Q Consensus       510 ~av~gl-~d~c~~lgip  525 (737)
                      +.++-+ ..-++-||++
T Consensus       265 ~lv~~~s~nPAki~gl~  281 (344)
T cd01316         265 DIVDRLHTNPKRIFNLP  281 (344)
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999949899972889


No 194
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=27.21  E-value=37  Score=13.24  Aligned_cols=50  Identities=20%  Similarity=0.293  Sum_probs=34.3

Q ss_pred             HHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             76410278510223221024566686213469999999985221028866544
Q gi|254780970|r  477 WRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       477 l~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +...+..||+-+.++.++.+..   ++.+.+..+-+..+.+.|..+++|++-=
T Consensus        80 v~~Ai~~GAdeid~vi~~~~~~---~~~~~~~~~~i~~v~~~~~~~~lkvIiE  129 (231)
T pfam01791        80 AEEAIALGADEVDMVVNIGADG---SEDEEQVLAEIAAVKEACHGEGLKVILE  129 (231)
T ss_pred             HHHHHHCCCCEEEEEEECCCCC---CCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             9999987998899997246578---9559999999999998631048708999


No 195
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.08  E-value=37  Score=13.23  Aligned_cols=18  Identities=22%  Similarity=0.292  Sum_probs=8.0

Q ss_pred             HCCCCHHHHHHHHHHHCC
Q ss_conf             619998999999999578
Q gi|254780970|r   13 AHGLTKDECDQIIHILKR   30 (737)
Q Consensus        13 ~~gL~~~e~~~i~~~l~R   30 (737)
                      +..+|+.|++.|.+.|||
T Consensus        51 kenfSpsEmqaiA~eL~r   68 (71)
T COG4840          51 KENFSPSEMQAIADELGR   68 (71)
T ss_pred             HCCCCHHHHHHHHHHHHH
T ss_conf             625998999999999987


No 196
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=26.92  E-value=14  Score=16.05  Aligned_cols=93  Identities=25%  Similarity=0.152  Sum_probs=45.8

Q ss_pred             CCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHH-HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             00013576314203777622797304532100001001-13567897776410278510223221024566686213469
Q gi|254780970|r  430 IQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFE-GTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQF  508 (737)
Q Consensus       430 v~~Pg~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~-ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ql  508 (737)
                      +..||+.+-|..+.+.....++...|..|..+.+++.. +-+. =.+.+...+.-  +.-++.  +|  +|.+|...---
T Consensus       109 l~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~-d~~~l~~~i~~--ktk~i~--ln--~PnNPTGav~~  181 (393)
T COG0436         109 LLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKP-DLEDLEAAITP--KTKAII--LN--SPNNPTGAVYS  181 (393)
T ss_pred             HCCCCCEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCC-CHHHHHHHCCC--CCEEEE--EE--CCCCCCCCCCC
T ss_conf             7189988998389982559999877997987216666558747-99999864774--645999--97--99996677889


Q ss_pred             HHHHHHHHHHHHHCCCCCCCC
Q ss_conf             999999985221028866544
Q gi|254780970|r  509 VHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       509 ~~av~gl~d~c~~lgipivgG  529 (737)
                      .+.++.+.+.|++.++-+++-
T Consensus       182 ~~~l~~i~~~a~~~~i~ii~D  202 (393)
T COG0436         182 KEELKAIVELAREHDIIIISD  202 (393)
T ss_pred             HHHHHHHHHHHHHCCEEEEEE
T ss_conf             999999999999879299996


No 197
>PRK08960 hypothetical protein; Provisional
Probab=26.79  E-value=25  Score=14.40  Aligned_cols=32  Identities=9%  Similarity=-0.017  Sum_probs=16.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      ||.+|-..---.+-++.+.++|++.++.|++-
T Consensus       173 nP~NPTG~v~s~~~l~~l~~~a~~~~~~vI~D  204 (387)
T PRK08960        173 SPANPTGTLLSRDELAALSQALKARGGHLVVD  204 (387)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             89898863146899999999876239779984


No 198
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=26.70  E-value=37  Score=13.18  Aligned_cols=46  Identities=28%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC--CCCEE
Q ss_conf             66214788998619998999999999578971889999853300110744588999751206--97489
Q gi|254780970|r    2 SKPSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTT--GKHVI   68 (737)
Q Consensus         2 ~~~~~~~e~~~~~gL~~~e~~~i~~~l~R~Pt~~El~~~~~~wSEHC~~k~~~~~l~~~~~~--~~~vi   68 (737)
                      +++.|+.|+.+++||+.+|++..=                     |-.-|.+-..++.++..  ++.++
T Consensus         9 ~~~k~I~~ia~k~Gl~~d~lelYG---------------------~ykAKi~~~~~~~l~~k~~gKlIL   56 (554)
T COG2759           9 ATMKPIEEIAEKLGLSADDLELYG---------------------HYKAKISLEVIKRLKNKPDGKLIL   56 (554)
T ss_pred             CCCCCHHHHHHHCCCCHHHHHHCC---------------------CHHHHCCHHHHHHHCCCCCCEEEE
T ss_conf             553569999988099877765424---------------------034315899997531488860899


No 199
>cd01899 Ygr210 Ygr210 subfamily.  Ygr210 is a member of Obg-like family and present in archaea and fungi.  They are characterized by a distinct glycine-rich motif immediately following the Walker B motif.  The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family.  Among eukaryotes, the Ygr210 subfamily is represented only in fungi.  These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=26.67  E-value=14  Score=16.08  Aligned_cols=16  Identities=38%  Similarity=0.623  Sum_probs=11.6

Q ss_pred             EECCCCCC-CCCCCCCC
Q ss_conf             95178877-76588887
Q gi|254780970|r   89 KMESHNHP-SYIEPYQG  104 (737)
Q Consensus        89 k~EtHNhP-s~i~P~~G  104 (737)
                      .+|+.|+| |.|+|--|
T Consensus        22 ~~~~anyPF~TIePN~G   38 (318)
T cd01899          22 DVEIANYPFTTIDPNVG   38 (318)
T ss_pred             CCCCCCCCCCCCCCCCC
T ss_conf             98512799667677416


No 200
>PRK10578 hypothetical protein; Provisional
Probab=26.18  E-value=4.3  Score=19.61  Aligned_cols=20  Identities=40%  Similarity=0.630  Sum_probs=10.7

Q ss_pred             CCCCCC-CCCCCCCCCCCEEEE
Q ss_conf             210558-102257677874368
Q gi|254780970|r  105 AATGVG-GILRDIFTMGARPVA  125 (737)
Q Consensus       105 AaTg~g-G~iRDi~~~Ga~p~a  125 (737)
                      ..|++| |.+||++- |..|.+
T Consensus        37 ~vTa~GGGtlRDlLL-~~~P~~   57 (207)
T PRK10578         37 VVTAVGGGTIRDMAL-DNGPVF   57 (207)
T ss_pred             HHHHCCCHHHHHHHC-CCCCCE
T ss_conf             999524337765523-788985


No 201
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=26.06  E-value=35  Score=13.34  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             8899998533001107445889
Q gi|254780970|r   34 LTEIGIISAMWNEHCSYKSSKK   55 (737)
Q Consensus        34 ~~El~~~~~~wSEHC~~k~~~~   55 (737)
                      |.||+-.||.|..+|..+.+..
T Consensus        30 d~~La~~A~~~A~~C~~~~~~~   51 (138)
T cd05383          30 NEEAAQNAKKWANTCNLTHSPP   51 (138)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCC
T ss_conf             8999999999997475557970


No 202
>pfam07002 Copine Copine. This family represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca(2+)-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth.
Probab=25.90  E-value=16  Score=15.77  Aligned_cols=15  Identities=27%  Similarity=0.532  Sum_probs=6.2

Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             100113567897776
Q gi|254780970|r  464 DPFEGTKQAVAECWR  478 (737)
Q Consensus       464 dP~~ga~~AV~Eal~  478 (737)
                      |||.-|..+|.+.+.
T Consensus        11 N~Y~~AI~~vg~il~   25 (145)
T pfam07002        11 NPYEQAIRIVGEILQ   25 (145)
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             899999999999987


No 203
>PRK07543 consensus
Probab=25.85  E-value=33  Score=13.55  Aligned_cols=19  Identities=11%  Similarity=0.191  Sum_probs=7.7

Q ss_pred             CCCCCCCCCCHHHHHHHHH
Q ss_conf             4578756863888998887
Q gi|254780970|r  130 LRFGAIHHPKTKHLLSGVV  148 (737)
Q Consensus       130 l~~g~~~~p~~~~~~~~~~  148 (737)
                      |.+|+|+-|-+..+.+.+.
T Consensus        36 l~~G~pdf~~p~~i~~a~~   54 (400)
T PRK07543         36 LGAGEPDFDTPDNIKQAAI   54 (400)
T ss_pred             CCCCCCCCCCCHHHHHHHH
T ss_conf             9997999997999999999


No 204
>PRK11032 hypothetical protein; Provisional
Probab=25.78  E-value=39  Score=13.07  Aligned_cols=17  Identities=41%  Similarity=0.620  Sum_probs=11.2

Q ss_pred             CCHHHHHHHHHHHCCCC
Q ss_conf             99899999999957897
Q gi|254780970|r   16 LTKDECDQIIHILKRQP   32 (737)
Q Consensus        16 L~~~e~~~i~~~l~R~P   32 (737)
                      ||.+|++.|..+|+|+-
T Consensus        43 LT~eE~~li~~ylkRDl   59 (160)
T PRK11032         43 LTRDEVDLITRAVRRDL   59 (160)
T ss_pred             HCHHHHHHHHHHHHHHH
T ss_conf             07999999999999999


No 205
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=25.32  E-value=39  Score=13.02  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=19.0

Q ss_pred             CCCCCHHHHHHHHHCCCCCCEE
Q ss_conf             7752011122332014775289
Q gi|254780970|r  267 MGAAGLTCSAIEMGNQGNLGIT  288 (737)
Q Consensus       267 ~gaGGl~~a~~Ema~~~~~G~~  288 (737)
                      +|+|||.+.+.+...++|+|--
T Consensus        33 vG~GGLG~~~a~~La~aGVG~i   54 (209)
T PRK08644         33 AGAGGLGSNIAVALARSGVGNL   54 (209)
T ss_pred             ECCCHHHHHHHHHHHHHCCCEE
T ss_conf             8887889999999999389818


No 206
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.79  E-value=40  Score=12.95  Aligned_cols=29  Identities=14%  Similarity=0.187  Sum_probs=25.6

Q ss_pred             CCHHHHHHHHHHHCCEEECCCCEEECCCC
Q ss_conf             67588999888709713112212104431
Q gi|254780970|r  322 EKQHKAQEILNKWGLHFSIIGITTNDKLF  350 (737)
Q Consensus       322 ~~~~~~~~i~~~~~~~~~~iG~vt~~~~~  350 (737)
                      +-..++.++++..++..-.+|+||+++.+
T Consensus       197 e~t~~L~~~AK~~~i~~fiVGHVTKeG~I  225 (456)
T COG1066         197 EVAAELMRLAKTKNIAIFIVGHVTKEGAI  225 (456)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf             99999999998759739999888246632


No 207
>PRK08068 transaminase; Reviewed
Probab=24.33  E-value=21  Score=14.94  Aligned_cols=18  Identities=6%  Similarity=-0.021  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHCCCCCCC
Q ss_conf             999998522102886654
Q gi|254780970|r  511 SVKGIREACQILDFPIVS  528 (737)
Q Consensus       511 av~gl~d~c~~lgipivg  528 (737)
                      -++.+.+.|++.++.|++
T Consensus       188 ~l~~l~~la~~~~i~vis  205 (389)
T PRK08068        188 FFEETVAFAKKHNIGVVH  205 (389)
T ss_pred             HHHHHHHHHHCCCEEEEE
T ss_conf             999999987107779996


No 208
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=24.20  E-value=41  Score=12.88  Aligned_cols=29  Identities=24%  Similarity=0.494  Sum_probs=18.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             2456668621346999999998522102886654
Q gi|254780970|r  495 NFGNPEKEEIMGQFVHSVKGIREACQILDFPIVS  528 (737)
Q Consensus       495 nf~~P~~~e~~~ql~~av~gl~d~c~~lgipivg  528 (737)
                      |||.| .||.|.   .++ .+.+.|.+|++||++
T Consensus        75 nfGm~-~PeGYR---KA~-Rlm~lAekf~~Pvit  103 (256)
T PRK12319         75 NFGQP-HPEGYR---KAL-RLMKQAEKFGRPVVT  103 (256)
T ss_pred             CCCCC-CHHHHH---HHH-HHHHHHHHHCCCEEE
T ss_conf             69999-817999---999-999999980998799


No 209
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant  pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=24.18  E-value=38  Score=13.13  Aligned_cols=17  Identities=18%  Similarity=0.599  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             88999985330011074
Q gi|254780970|r   34 LTEIGIISAMWNEHCSY   50 (737)
Q Consensus        34 ~~El~~~~~~wSEHC~~   50 (737)
                      |.||+-.++.|.+.|..
T Consensus        36 d~~La~~A~~~a~~C~~   52 (144)
T smart00198       36 DCELASSAQNWANQCPF   52 (144)
T ss_pred             CHHHHHHHHHHHHHCCC
T ss_conf             89999999999974865


No 210
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=24.06  E-value=42  Score=12.86  Aligned_cols=57  Identities=18%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             HHHHHHHHHCCC-CCHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             897776410278-510223221024566686-213469999999985221028866544
Q gi|254780970|r  473 VAECWRNIIATG-AKPLAITDNLNFGNPEKE-EIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       473 V~Eal~Nl~a~G-a~Plait~~lnf~~P~~~-e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +-..+|.+.... .-.+-+.|.+....|.+. ...-++.+..++++..|++|+|||+.-
T Consensus       292 ir~~~r~~~~~~~~l~livIDYLqLi~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~l  350 (421)
T TIGR03600       292 IRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVLL  350 (421)
T ss_pred             HHHHHHHHHHHCCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99999999986289869997578653788888889999999999999999979978997


No 211
>PRK08069 consensus
Probab=24.04  E-value=27  Score=14.19  Aligned_cols=15  Identities=13%  Similarity=0.045  Sum_probs=7.8

Q ss_pred             CCCHHHHHHHHHHHC
Q ss_conf             467588999888709
Q gi|254780970|r  321 PEKQHKAQEILNKWG  335 (737)
Q Consensus       321 ~~~~~~~~~i~~~~~  335 (737)
                      ++.++++.++|++++
T Consensus       182 ~e~l~~i~~la~~~~  196 (390)
T PRK08069        182 KEELAALGEVCLEHD  196 (390)
T ss_pred             CHHHHHHHHHHHHCC
T ss_conf             068999999987563


No 212
>pfam01041 DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase family. The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC, and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin.
Probab=23.99  E-value=31  Score=13.76  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=23.2

Q ss_pred             CCHHHHHHHHHHHCCCC--C-HHHHHHHHHHHCCCCCCC
Q ss_conf             99899999999957897--1-889999853300110744
Q gi|254780970|r   16 LTKDECDQIIHILKRQP--T-LTEIGIISAMWNEHCSYK   51 (737)
Q Consensus        16 L~~~e~~~i~~~l~R~P--t-~~El~~~~~~wSEHC~~k   51 (737)
                      ++.+|++++.+.|.-..  | --+..-|.+.+|+.+..|
T Consensus         3 ~~~~~~~~v~~~l~s~~~~~~G~~v~~fE~~~~~~~g~k   41 (363)
T pfam01041         3 IDEEELAAVTEVLRSGWLTTGGPEVREFEKEFAAYLGVK   41 (363)
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             998999999999973981479989999999999997849


No 213
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=23.96  E-value=16  Score=15.75  Aligned_cols=50  Identities=18%  Similarity=0.397  Sum_probs=30.8

Q ss_pred             CCHHHHHHHHH-HHCCCCCHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHCCCCE
Q ss_conf             99899999999-95789718899998533001107445-889997512069748
Q gi|254780970|r   16 LTKDECDQIIH-ILKRQPTLTEIGIISAMWNEHCSYKS-SKKWLRTLPTTGKHV   67 (737)
Q Consensus        16 L~~~e~~~i~~-~l~R~Pt~~El~~~~~~wSEHC~~k~-~~~~l~~~~~~~~~v   67 (737)
                      |++++-++|++ +|..--+.+|+-.|.+  .+||.|-- .+.+++.+..-.+.+
T Consensus         3 l~~~~r~~l~e~fl~~l~~pV~ivvF~~--~~~c~yc~~t~~ll~ela~lsdKi   54 (113)
T cd02975           3 LSDEDRKALKEEFFKEMKNPVDLVVFSS--KEGCQYCEVTKQLLEELSELSDKL   54 (113)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEEEEC--CCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf             8888999999999985799869999957--988711699999999999748853


No 214
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=23.92  E-value=42  Score=12.84  Aligned_cols=18  Identities=22%  Similarity=0.265  Sum_probs=9.0

Q ss_pred             CHHHHHHHHHHHCCEEEC
Q ss_conf             758899988870971311
Q gi|254780970|r  323 KQHKAQEILNKWGLHFSI  340 (737)
Q Consensus       323 ~~~~~~~i~~~~~~~~~~  340 (737)
                      ..+++.+++++.|++-..
T Consensus        82 E~~El~~iy~~~G~~~~~   99 (225)
T cd02434          82 EKSEMVEIYSLKGLSEEV   99 (225)
T ss_pred             HHHHHHHHHHHCCCCHHH
T ss_conf             999999999877999899


No 215
>TIGR02980 SigBFG RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; InterPro: IPR014322   The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes.   With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , .    This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:IPR014236 from INTERPRO and SigG:IPR014212 from INTERPRO as well as SigB:IPR014288 from INTERPRO), and the high GC Gram-positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=23.91  E-value=42  Score=12.84  Aligned_cols=26  Identities=15%  Similarity=0.018  Sum_probs=13.2

Q ss_pred             HHHCCCEEEEEECC---CCHHHHHHHHHH
Q ss_conf             99959806994648---657999999998
Q gi|254780970|r  617 MINAKKITACHDIS---TGGLIITLAEMT  642 (737)
Q Consensus       617 li~~g~I~S~HDiS---dGGL~~aL~EMa  642 (737)
                      +.++-..+|.|+.-   ++|=-.+|+.+.
T Consensus       130 A~~~Y~~~Sld~~~~a~~dg~~~~L~D~l  158 (229)
T TIGR02980       130 AGNSYSALSLDATIEADDDGDPIALLDTL  158 (229)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             65417861120004558888424566444


No 216
>pfam11198 DUF2857 Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.
Probab=23.90  E-value=42  Score=12.84  Aligned_cols=26  Identities=19%  Similarity=0.111  Sum_probs=11.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             89996479899999999999999959
Q gi|254780970|r  596 IGPPPKVDCHLEKNHGFFVLSMINAK  621 (737)
Q Consensus       596 ~g~~p~~d~~~~k~~~~~v~~li~~g  621 (737)
                      .|.+|..+.+....++..-+++.++.
T Consensus       117 ~GR~~~~~ee~~~~lW~~W~~~~~~~  142 (181)
T pfam11198       117 KGRPPALDEEQEAALWRAWQQLRSKP  142 (181)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             99999998688999999999989864


No 217
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=23.88  E-value=42  Score=12.84  Aligned_cols=24  Identities=8%  Similarity=0.317  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             469999999985221028866544
Q gi|254780970|r  506 GQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       506 ~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      .++.+..+.++..|+++++||+..
T Consensus       154 ~~v~~i~~~Lk~lA~e~~i~ii~~  177 (186)
T pfam03796       154 QEISEISRSLKALAKELNIPVIAL  177 (186)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             999999999999999979918997


No 218
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=23.85  E-value=21  Score=14.91  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=19.0

Q ss_pred             CCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             6668621-3469999999985221028866544
Q gi|254780970|r  498 NPEKEEI-MGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~-~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|-. .| -.+-++.+.+.|++.++.|++-
T Consensus       174 ~P~NPtG~v~-s~e~l~~i~~la~~~~v~iisD  205 (390)
T PRK07309        174 YPANPTGVTY-SREQIKALAEVLKKYDIFVISD  205 (390)
T ss_pred             CCCCCCCCCC-CHHHHHHHHHHHHHCCEEEEEE
T ss_conf             9989988878-9999999999997689899950


No 219
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=23.64  E-value=42  Score=12.81  Aligned_cols=85  Identities=18%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECC----------------CCCCCHHHHHHCCCCCCEE
Q ss_conf             999999999598069946486579999999984589708998056----------------6689878887298832189
Q gi|254780970|r  611 GFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPI----------------EIEKDPKPFLFGEDQGRYV  674 (737)
Q Consensus       611 ~~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~----------------~~~~d~~~~LFsEs~Gr~i  674 (737)
                      ..++.++.......-..=|.-|-|..||+.--|..+.|+.|-.--                ..-.+...++=...-...+
T Consensus        72 ~~ff~~~Lg~~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iai  151 (211)
T COG2344          72 RDFFDDLLGQDKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAI  151 (211)
T ss_pred             HHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEE
T ss_conf             99999983877403489990570888986074233269359999617878837524881455268888898861761899


Q ss_pred             EEECHHHHHHHHHHHHHCCCC
Q ss_conf             999688099899999857984
Q gi|254780970|r  675 VCISPENQDLVMSEANNKNIP  695 (737)
Q Consensus       675 i~V~~~~~~~~~~~~~~~gi~  695 (737)
                      ++|+.++..++.+.+-++|+.
T Consensus       152 LtVPa~~AQ~vad~Lv~aGVk  172 (211)
T COG2344         152 LTVPAEHAQEVADRLVKAGVK  172 (211)
T ss_pred             EECCHHHHHHHHHHHHHCCCC
T ss_conf             973489899999999983873


No 220
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744    This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=23.47  E-value=43  Score=12.78  Aligned_cols=14  Identities=29%  Similarity=0.394  Sum_probs=7.4

Q ss_pred             CCCCCEEECCCCCC
Q ss_conf             38980751377665
Q gi|254780970|r  567 HEGDLILMIGNDGC  580 (737)
Q Consensus       567 ~~Gd~I~liG~~~~  580 (737)
                      +.|.-||+-|+.+.
T Consensus       711 ~~GW~LYvgGnGG~  724 (813)
T TIGR02374       711 EKGWNLYVGGNGGT  724 (813)
T ss_pred             CCCCEEEECCCCCC
T ss_conf             28746888167887


No 221
>PRK06749 replicative DNA helicase; Provisional
Probab=23.43  E-value=43  Score=12.78  Aligned_cols=57  Identities=16%  Similarity=0.166  Sum_probs=37.0

Q ss_pred             HHHHHHHHHCC-CCCH-HHHHHHCCCCCC--CCC-CHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             89777641027-8510-223221024566--686-213469999999985221028866544
Q gi|254780970|r  473 VAECWRNIIAT-GAKP-LAITDNLNFGNP--EKE-EIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       473 V~Eal~Nl~a~-Ga~P-lait~~lnf~~P--~~~-e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +.-.+|.+..- |.+. +-+.|.+....+  ... ...-++.+..++++..|++|+|||+.=
T Consensus       285 i~~~~r~~~~~~g~~~~livIDYlqLi~~~~~~~~~r~~ev~~isr~lK~lAkel~vpvi~l  346 (428)
T PRK06749        285 IWMQTRKLKRKHGDKKVLIIVDYLQLITGDPKHKGNRFQEISEISRKLKLLARELNVCVVAL  346 (428)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99999999997499876999767765057877777899999999999999999969989997


No 222
>PRK12414 putative aminotransferase; Provisional
Probab=23.07  E-value=18  Score=15.37  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=10.2

Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             04578756863888998887458
Q gi|254780970|r  129 SLRFGAIHHPKTKHLLSGVVAGI  151 (737)
Q Consensus       129 ~l~~g~~~~p~~~~~~~~~~~G~  151 (737)
                      .|..|+|+-|-+..+.+.+.+-+
T Consensus        33 ~l~~G~Pd~~~p~~i~~a~~~a~   55 (384)
T PRK12414         33 NLSQGAPNFAPDPALVEGVARAM   55 (384)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             81898999999899999999999


No 223
>PRK06290 aspartate aminotransferase; Provisional
Probab=23.00  E-value=16  Score=15.66  Aligned_cols=32  Identities=13%  Similarity=-0.027  Sum_probs=15.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|...---.+-++.+.+.|++.++.|++-
T Consensus       187 sP~NPTG~v~s~e~l~~i~~~a~~~~i~vIsD  218 (411)
T PRK06290        187 YPNNPTGAVATKEFYKEVVDFAFENDIIVVQD  218 (411)
T ss_pred             CCCCCCCEEECHHHHHHHHHHHHHCCCEEECH
T ss_conf             99999861424899999999986428776423


No 224
>TIGR01709 typeII_sec_gspL general secretion pathway protein L; InterPro: IPR007812 This family consists of general secretion pathway protein L sequences from several Gram-negative bacteria. The general secretion pathway of Gram-negative bacteria is responsible for extracellular secretion of a number of different proteins, including proteases and toxins. This pathway supports secretion of proteins across the cell envelope in two distinct steps, in which the second step, involving translocation through the outer membrane, is assisted by at least 13 different gene products. GspL is predicted to contain a large cytoplasmic domain and has been shown to interact with the autophosphorylating cytoplasmic membrane protein GspE. It is thought that the tri-molecular complex of GspL, GspE and GspM might be involved in regulating the opening and closing of the secretion pore and/or transducing energy to the site of outer membrane translocation .; GO: 0008565 protein transporter activity, 0015031 protein transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=22.99  E-value=44  Score=12.72  Aligned_cols=33  Identities=18%  Similarity=0.274  Sum_probs=28.5

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHCCEEECC
Q ss_conf             788850899995467588999888709713112
Q gi|254780970|r  309 SESQERMLMILNPEKQHKAQEILNKWGLHFSII  341 (737)
Q Consensus       309 sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~i  341 (737)
                      .|..+|.|++|..+.++.+...|+..|+....|
T Consensus       102 ~~~~~r~v~~v~r~~l~~wl~~l~~~G~~~~~v  134 (433)
T TIGR01709       102 AEGATRVVAVVDREWLQAWLDLLTEAGLAPERV  134 (433)
T ss_pred             CCCCEEEEEEEHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             246507887522789999999999758980105


No 225
>TIGR00028 Mtu_PIN_fam Mycobacterium tuberculosis PIN domain family; InterPro: IPR006226   This is a family of hypothetical proteins with no known function that is mainly restricted to Mycobacterium tuberculosis. No similar sequences have been found outside of Mycobacteria..
Probab=22.82  E-value=44  Score=12.70  Aligned_cols=44  Identities=20%  Similarity=0.259  Sum_probs=22.4

Q ss_pred             HHHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEECCC
Q ss_conf             85330011074458899975120697489933477368983698
Q gi|254780970|r   40 ISAMWNEHCSYKSSKKWLRTLPTTGKHVIQGPGENAGVVDIGGG   83 (737)
Q Consensus        40 ~~~~wSEHC~~k~~~~~l~~~~~~~~~vi~~~~~~a~vi~~~~~   83 (737)
                      ++..|++|--|+..|.||..+-+.+.++...+-=-+|.|++--+
T Consensus        18 laa~~~~h~~H~~a~~Wl~~~~~~~~~~~~~~~~~~gf~R~~tn   61 (155)
T TIGR00028        18 LAAVNRDHVHHDAARAWLDRLLAGGDWATCPWLTLAGFVRLLTN   61 (155)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHEEEEEEC
T ss_conf             98752887174889999999836994898454223000633551


No 226
>PRK06225 aspartate aminotransferase; Provisional
Probab=22.81  E-value=22  Score=14.73  Aligned_cols=33  Identities=15%  Similarity=-0.013  Sum_probs=22.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             566686213469999999985221028866544
Q gi|254780970|r  497 GNPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       497 ~~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      .||.+|-..---.+-++.+.+.|++.++.++.-
T Consensus       159 ~nPnNPTG~v~s~~~l~~l~~~a~~~~i~ii~D  191 (375)
T PRK06225        159 IDPLNPLGSSYTREEIKEFAEIARDNDAYLVHD  191 (375)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf             299899888788999999999998627700002


No 227
>PRK06375 consensus
Probab=22.69  E-value=24  Score=14.50  Aligned_cols=32  Identities=16%  Similarity=0.056  Sum_probs=17.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      ||.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       167 nP~NPTG~v~s~e~l~~i~~la~~~~i~iIsD  198 (381)
T PRK06375        167 NPVNPTGKVLSEKEIRELVDFALENNLYIVSD  198 (381)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEC
T ss_conf             99798899999999999999887565899813


No 228
>KOG2584 consensus
Probab=22.67  E-value=44  Score=12.68  Aligned_cols=25  Identities=8%  Similarity=0.174  Sum_probs=14.3

Q ss_pred             CHHHHHHHHHHHCCEEECCCCEEEC
Q ss_conf             7588999888709713112212104
Q gi|254780970|r  323 KQHKAQEILNKWGLHFSIIGITTND  347 (737)
Q Consensus       323 ~~~~~~~i~~~~~~~~~~iG~vt~~  347 (737)
                      -......+++..+||..++..+..+
T Consensus       234 A~~rai~ia~~~ncPlyvvhVmsks  258 (522)
T KOG2584         234 ATNRAITIARQANCPLYVVHVMSKS  258 (522)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEEHH
T ss_conf             9999999988628982058885263


No 229
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=22.50  E-value=44  Score=12.66  Aligned_cols=17  Identities=18%  Similarity=0.188  Sum_probs=5.5

Q ss_pred             HHHHHHHHHCC-CCHHHH
Q ss_conf             14788998619-998999
Q gi|254780970|r    5 SPILEILTAHG-LTKDEC   21 (737)
Q Consensus         5 ~~~~e~~~~~g-L~~~e~   21 (737)
                      +-+..+..++| |+..+.
T Consensus         5 eli~~ia~~~~~l~~~~~   22 (91)
T PRK00199          5 ELIERLATRQPHLPAKDV   22 (91)
T ss_pred             HHHHHHHHHCCCCCHHHH
T ss_conf             999999987699899999


No 230
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=22.46  E-value=45  Score=12.65  Aligned_cols=26  Identities=19%  Similarity=0.166  Sum_probs=16.9

Q ss_pred             CCEEEEEECCCEEEEEEECCCCCCCC
Q ss_conf             77368983698399999517887776
Q gi|254780970|r   73 ENAGVVDIGGGDCVVFKMESHNHPSY   98 (737)
Q Consensus        73 ~~a~vi~~~~~~~~~~k~EtHNhPs~   98 (737)
                      .+.-+||....+.+=-=+++|+|...
T Consensus        49 ~~t~viDL~Gk~v~PGfvDaH~Hl~~   74 (535)
T COG1574          49 PATEVIDLKGKFVLPGFVDAHLHLIS   74 (535)
T ss_pred             CCCEEEECCCCEECCCCCHHHHHHHH
T ss_conf             88639968998754661004677987


No 231
>pfam01981 PTH2 Peptidyl-tRNA hydrolase PTH2. Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.
Probab=22.43  E-value=45  Score=12.65  Aligned_cols=53  Identities=17%  Similarity=0.200  Sum_probs=29.5

Q ss_pred             HHHHHCCCCCEEEEEEEC-CCHHHHHHHHHHHCCEEECCCCEEECCCCCCCCCCCCC
Q ss_conf             898617888508999954-67588999888709713112212104431000258644
Q gi|254780970|r  304 YEMMLSESQERMLMILNP-EKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEV  359 (737)
Q Consensus       304 ~ei~~sEsQeR~~~~v~~-~~~~~~~~i~~~~~~~~~~iG~vt~~~~~~v~~~g~~v  359 (737)
                      ++-|..+.|-..++-++. +.+.++.+.+++.++++.+   |.+.|+-.+--+..++
T Consensus        42 ~~~W~~~G~~KIvlkv~de~~L~~l~~~a~~~gl~~~~---V~DAG~Tei~pgt~Tv   95 (116)
T pfam01981        42 LKAWEREGQKKIVLKVNSEEELLELKEKAKSLGLPTSL---IQDAGRTQIAPGTVTV   95 (116)
T ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEE---EECCCCEECCCCCEEE
T ss_conf             99999779967999729999999999999984996699---9868731459998589


No 232
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=22.43  E-value=45  Score=12.65  Aligned_cols=38  Identities=18%  Similarity=0.093  Sum_probs=20.5

Q ss_pred             CCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf             76642211221121135543112256897799965765
Q gi|254780970|r  174 NNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKT  211 (737)
Q Consensus       174 ~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~t  211 (737)
                      .++.+..++.+|+.+.-.+.+.-.....+..+++|.++
T Consensus        98 ~~~~llvaGG~GiaPl~~l~~~l~~~~~~v~~i~G~r~  135 (246)
T cd06218          98 DGKVLLVGGGIGIAPLLFLAKQLAERGIKVTVLLGFRS  135 (246)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             97299996573154399999999974992899997477


No 233
>pfam03458 UPF0126 UPF0126 domain. Domain always found as pair in bacterial membrane proteins of unknown function. This domain contains three transmembrane helices. The conserved glycines are suggestive of an ion channel (C. Yeats unpublished obs.).
Probab=22.40  E-value=12  Score=16.62  Aligned_cols=24  Identities=46%  Similarity=0.803  Sum_probs=14.3

Q ss_pred             CCCCCCCCC-CCCCCCCCCCCEEEEE
Q ss_conf             887210558-1022576778743687
Q gi|254780970|r  102 YQGAATGVG-GILRDIFTMGARPVAA  126 (737)
Q Consensus       102 ~~GAaTg~g-G~iRDi~~~Ga~p~a~  126 (737)
                      .=|..|++| |.+||+++ |..|...
T Consensus        32 ~lg~iTa~gGG~iRDil~-~~~P~~~   56 (81)
T pfam03458        32 VLGVVTAVGGGILRDVLL-GEVPLVL   56 (81)
T ss_pred             HHHHHHHHCCHHHHHHHC-CCCCHHH
T ss_conf             889988611356999991-7898255


No 234
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=22.11  E-value=17  Score=15.57  Aligned_cols=32  Identities=9%  Similarity=0.022  Sum_probs=16.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66686213469999999985221028866544
Q gi|254780970|r  498 NPEKEEIMGQFVHSVKGIREACQILDFPIVSG  529 (737)
Q Consensus       498 ~P~~~e~~~ql~~av~gl~d~c~~lgipivgG  529 (737)
                      +|.+|-..---.+-++.+.+.|++.++.|++-
T Consensus       172 ~P~NPTG~v~s~~~l~~i~~la~~~~i~iIsD  203 (383)
T TIGR03540       172 YPNNPTGAVAPLKFFKELVEFAKEYNIIVCHD  203 (383)
T ss_pred             CCCCCCCCCCCCHHHHCCCCCCCCCCCEEECC
T ss_conf             99897070121022220100124554057611


No 235
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase; InterPro: IPR013447    Proteins in this entry match the enzyme RhaD, rhamnulose-1-phosphate aldolase (4.1.2.19 from EC).; GO: 0008994 rhamnulose-1-phosphate aldolase activity.
Probab=21.83  E-value=46  Score=12.57  Aligned_cols=15  Identities=33%  Similarity=0.547  Sum_probs=6.9

Q ss_pred             CCCCCCCCCEEEECC
Q ss_conf             000135763142037
Q gi|254780970|r  430 IQLPGGDAGVIRVEG  444 (737)
Q Consensus       430 v~~Pg~DaaVv~~~~  444 (737)
                      ...|-.|-+|+|++.
T Consensus        83 ~~~P~~nLg~~rVs~   97 (273)
T TIGR02624        83 EENPAENLGVLRVSE   97 (273)
T ss_pred             HCCCCCCEEEEEECC
T ss_conf             117014646789815


No 236
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=21.79  E-value=46  Score=12.56  Aligned_cols=45  Identities=11%  Similarity=0.318  Sum_probs=26.5

Q ss_pred             HHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCEEEC
Q ss_conf             0220466789998986178885089999546758899988870971311
Q gi|254780970|r  292 DKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSI  340 (737)
Q Consensus       292 ~~vp~~~~~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~~~~~~~  340 (737)
                      -.||.-.++.. | |+..|+. + +++|+|.+.+.+.+.+++.++.-.-
T Consensus         4 ~~ip~~~DNy~-y-li~d~~~-~-a~vIDPgd~~~i~~~l~~~~l~l~~   48 (251)
T PRK10241          4 NSIPAFDDNYI-W-VLNDEAG-R-CLIVDPGEAEPVLNAIAANNWQPEA   48 (251)
T ss_pred             EEEEEECCEEE-E-EEECCCC-C-EEEECCCCHHHHHHHHHHCCCEEEE
T ss_conf             99612556689-9-9985998-3-8999499709999999977991789


No 237
>pfam08731 AFT Transcription factor AFT. AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis. This family includes the paralogous pair of transcription factors AFT1 and AFT2.
Probab=21.72  E-value=46  Score=12.55  Aligned_cols=14  Identities=29%  Similarity=0.442  Sum_probs=8.6

Q ss_pred             CEEEEEEECCCCCC
Q ss_conf             83999995178877
Q gi|254780970|r   83 GDCVVFKMESHNHP   96 (737)
Q Consensus        83 ~~~~~~k~EtHNhP   96 (737)
                      .|.+++=.++|+||
T Consensus        76 ~W~ivv~n~~H~Hp   89 (90)
T pfam08731        76 KWTIVVMNNNHSHP   89 (90)
T ss_pred             EEEEEEECCCCCCC
T ss_conf             48899823677898


No 238
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=21.61  E-value=46  Score=12.54  Aligned_cols=80  Identities=15%  Similarity=0.155  Sum_probs=44.7

Q ss_pred             CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHHCCC
Q ss_conf             7622797304532100001001135678977764102785102232210245666862-134699999999852210288
Q gi|254780970|r  446 ETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEE-IMGQFVHSVKGIREACQILDF  524 (737)
Q Consensus       446 ~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e-~~~ql~~av~gl~d~c~~lgi  524 (737)
                      .+.|+.++.+- .-|-..+|.+-..+-..-+++.+--+|++-+.+..   |-+|+.++ .--+=..-|+.+.+.|++.+|
T Consensus        83 ~~~GLlla~E~-tgyd~t~~gRl~~li~~wsv~rik~~GadAvK~L~---yy~pD~~~ein~~k~a~ve~ig~eC~~~di  158 (326)
T PRK04161         83 NQTGLLLAYEK-TGYDATTTSRLPDCLVEWSVKRLKEAGADAVKFLL---YYDVDGDEEINLQKQAYIERIGSECTAEDI  158 (326)
T ss_pred             CCCCEEEEEEC-CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEE---EECCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             88765999613-46777787657666766689999982846137999---978999878889999999999999987799


Q ss_pred             CCCCC
Q ss_conf             66544
Q gi|254780970|r  525 PIVSG  529 (737)
Q Consensus       525 pivgG  529 (737)
                      |++==
T Consensus       159 pf~lE  163 (326)
T PRK04161        159 PFFLE  163 (326)
T ss_pred             CEEEE
T ss_conf             83898


No 239
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188   This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. .
Probab=21.07  E-value=47  Score=12.46  Aligned_cols=188  Identities=14%  Similarity=0.162  Sum_probs=102.0

Q ss_pred             CCCCCCCCCCCC---CCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCC--CCCCH-HHHHHHHHCCCCCCCCCCC
Q ss_conf             320011236866---67631112222333520233102143898075137766--55432-6788886116789996479
Q gi|254780970|r  530 NVSFYNETNGQS---IFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDG--CHLDC-SMYSLECASSNIGPPPKVD  603 (737)
Q Consensus       530 kvSl~n~t~~~~---I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~--~~Lgg-S~~~~~~~~~~~g~~p~~d  603 (737)
                      ||.|.-+-+++-   -|-+|-|=..|.|..   .-.+.|+ +||.++++|..-  .|.|| |.|++.-..=.---|...+
T Consensus        43 KDALA~tg~g~v~R~yP~~PGID~aG~Vv~---S~dp~F~-~GD~VivTGyglG~~H~GGysqyaRVp~dWlVpLP~gls  118 (330)
T TIGR02823        43 KDALAITGKGGVVRSYPMIPGIDLAGTVVS---SEDPRFR-PGDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLS  118 (330)
T ss_pred             HHHHEECCCCCEEEECCCCCCCCCEEEEEE---CCCCCCC-CCCEEEEEEECCCCCCCCCCEEEEEECHHHEECCCCCCC
T ss_conf             033101387976887787688175468984---4887757-887189974024565157622356733231015889889


Q ss_pred             HHHHHHH-------HHHHHHHHHCC-CE-----EEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHH-HHH----
Q ss_conf             8999999-------99999999959-80-----699464865799999999845897089980566689878-887----
Q gi|254780970|r  604 CHLEKNH-------GFFVLSMINAK-KI-----TACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPK-PFL----  665 (737)
Q Consensus       604 ~~~~k~~-------~~~v~~li~~g-~I-----~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~~~d~~-~~L----  665 (737)
                      +.....+       ...++.|.+.| +-     .-..=-|. |.-.--..|  -+++|.++--.. .+.+.. ++|    
T Consensus       119 l~eAM~~GTAGfTAaL~V~aLe~~Gl~~P~~GpVlVTGAtG-GVGS~Av~~--L~~lGY~V~A~t-Gk~~~~~~yL~~LG  194 (330)
T TIGR02823       119 LREAMALGTAGFTAALSVMALERNGLLTPEDGPVLVTGATG-GVGSLAVAI--LSKLGYEVVAST-GKAEEEVEYLKELG  194 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC-CHHHHHHHH--HHHCCCEEEEEE-CCHHHHHHHHHHCC
T ss_conf             88999860077899999999997268888888788706778-778999999--983797699973-78377889998658


Q ss_pred             ---------HCCC-CCC---------EEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCE-------EEEECC-------
Q ss_conf             ---------2988-321---------8999968809989999985798499989987986-------898074-------
Q gi|254780970|r  666 ---------FGED-QGR---------YVVCISPENQDLVMSEANNKNIPLRYLGKVSGST-------LSIHNI-------  712 (737)
Q Consensus       666 ---------FsEs-~Gr---------~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~~-------l~i~~~-------  712 (737)
                               |+++ .+|         .|=+|=-+-...+++.++-.|+ .+.+|-+.+..       |++.++       
T Consensus       195 A~evi~R~~l~~~a~~kPL~k~~WAGAvDtVGG~~La~~l~~~~ygG~-VA~cGlagG~~L~tTV~PFILRGV~LlGIDS  273 (330)
T TIGR02823       195 ASEVIDREELSEDAPGKPLEKERWAGAVDTVGGKTLANVLAQLKYGGA-VAACGLAGGADLPTTVLPFILRGVSLLGIDS  273 (330)
T ss_pred             CCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCE-EEEEECCCCCCCCCEECCHHHCCCEEEEECH
T ss_conf             110577112276878886312222215746875799999984068978-9999426798635012550432853888530


Q ss_pred             EECCHHHHHHHHHH
Q ss_conf             12149999999999
Q gi|254780970|r  713 LNIPVATLQTKYES  726 (737)
Q Consensus       713 ~~~~i~~l~~~w~~  726 (737)
                      ...+++.=+.+|++
T Consensus       274 V~~p~~~R~~~W~R  287 (330)
T TIGR02823       274 VYCPMALREAAWQR  287 (330)
T ss_pred             HCCCHHHHHHHHHH
T ss_conf             01887899999998


No 240
>PRK12427 flagellar biosynthesis sigma factor; Provisional
Probab=20.96  E-value=48  Score=12.45  Aligned_cols=13  Identities=23%  Similarity=0.319  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999985221028
Q gi|254780970|r  511 SVKGIREACQILD  523 (737)
Q Consensus       511 av~gl~d~c~~lg  523 (737)
                      .+-|+.++...|+
T Consensus        50 G~iGLi~Ai~rFD   62 (229)
T PRK12427         50 ALMGLLEALRRYG   62 (229)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999998449


No 241
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as 
Probab=20.83  E-value=46  Score=12.55  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=17.1

Q ss_pred             CHHHHHHHHHHHCCCCCCCCC
Q ss_conf             188999985330011074458
Q gi|254780970|r   33 TLTEIGIISAMWNEHCSYKSS   53 (737)
Q Consensus        33 t~~El~~~~~~wSEHC~~k~~   53 (737)
                      =|.||.-.+|.|.++|..+.+
T Consensus        23 Wd~~La~~Aq~wA~~c~~~h~   43 (122)
T cd00168          23 WDAELAKTAQNYANRCIFKHS   43 (122)
T ss_pred             ECHHHHHHHHHHHHHCCCCCC
T ss_conf             499999999999986041368


No 242
>KOG1004 consensus
Probab=20.78  E-value=42  Score=12.86  Aligned_cols=50  Identities=28%  Similarity=0.353  Sum_probs=30.6

Q ss_pred             CCCCCCEEEEE----CCCCCCCCCHHHHHHH---HHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf             25689779996----5765644410466667---77286533344433267989998
Q gi|254780970|r  197 ARGIGLPLVYL----GAKTGRDGIGGASMAS---EEFGENIAKKRPTVQVGDPFTGK  246 (737)
Q Consensus       197 ~~~~Gd~ii~~----G~~tg~dGi~Ga~~sS---~~~~~~~~~~~~~VQ~gdp~~ek  246 (737)
                      -+.+||.||=+    -+..+|.-|||+..+|   ..|.--....+|.+|+||-...|
T Consensus        62 iP~~~D~VIGiV~~~~gd~ykVDigg~~~a~L~~laFe~AtkrNrPnl~vGdliyak  118 (230)
T KOG1004          62 IPVKGDHVIGIVTSKSGDIYKVDIGGSEPASLSYLAFEGATKRNRPNLQVGDLIYAK  118 (230)
T ss_pred             CCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             378899899999850465179963898665331002368543578864316578999


No 243
>pfam02864 STAT_bind STAT protein, DNA binding domain. STAT proteins (Signal Transducers and Activators of Transcription) are a family of transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors. This family represents the DNA binding domain of STAT, which has an ig-like fold. STAT proteins also include an SH2 domain pfam00017.
Probab=20.72  E-value=33  Score=13.55  Aligned_cols=11  Identities=18%  Similarity=0.078  Sum_probs=3.9

Q ss_pred             CCCCHHHHHHH
Q ss_conf             68621346999
Q gi|254780970|r  500 EKEEIMGQFVH  510 (737)
Q Consensus       500 ~~~e~~~ql~~  510 (737)
                      ++.-.+|+-..
T Consensus       236 ~r~FtFW~Wf~  246 (254)
T pfam02864       236 GKSFTFWQWFD  246 (254)
T ss_pred             CCCCCHHHHHH
T ss_conf             99976898899


No 244
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family.
Probab=20.52  E-value=49  Score=12.39  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHCCCCC----HHHHHHHCC
Q ss_conf             356789777641027851----022322102
Q gi|254780970|r  469 TKQAVAECWRNIIATGAK----PLAITDNLN  495 (737)
Q Consensus       469 a~~AV~Eal~Nl~a~Ga~----Plait~~ln  495 (737)
                      |++=|==++|.-+|.=++    |++||.=+|
T Consensus       167 AYWWIRQ~ITRAIA~qSRTIRLPiH~~EKLn  197 (336)
T TIGR02997       167 AYWWIRQGITRAIANQSRTIRLPIHITEKLN  197 (336)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf             2468756889998436883247410766668


No 245
>pfam08652 RAI1 RAI1 like. RAI1 is homologous to Caenorhabditis elegans DOM-3 and human DOM3Z and binds to a nuclear exoribonuclease. It is required for 5.8S rRNA processing.
Probab=20.08  E-value=50  Score=12.33  Aligned_cols=29  Identities=17%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             CCCHHHHHHHHHCCCCEEECCCCCEEEEE
Q ss_conf             45889997512069748993347736898
Q gi|254780970|r   51 KSSKKWLRTLPTTGKHVIQGPGENAGVVD   79 (737)
Q Consensus        51 k~~~~~l~~~~~~~~~vi~~~~~~a~vi~   79 (737)
                      |.++-|+..|----++++.|+-|+.|++.
T Consensus        39 Kllk~W~QsfLvGv~~IvvGfRd~~g~l~   67 (68)
T pfam08652        39 KLLKWWAQSFLVGVPRIVVGFRDDDGILV   67 (68)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCEEC
T ss_conf             99999999986189859999977997483


Done!