RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780970|ref|YP_003065383.1|
phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter
asiaticus str. psy62]
(737 letters)
>gnl|CDD|30395 COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
synthetase domain [Nucleotide transport and metabolism].
Length = 743
Score = 863 bits (2232), Expect = 0.0
Identities = 334/726 (46%), Positives = 444/726 (61%), Gaps = 15/726 (2%)
Query: 13 AHGLTKDECDQIIHIL-KRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTT--GKHVIQ 69
L+ DE D I L R+PT TE+G+ + MW+EHCSYKSSK L+ PTT G++V+
Sbjct: 21 GLALSDDEYDYIREFLLGREPTDTELGMFAQMWSEHCSYKSSKSLLKMFPTTHTGEYVLS 80
Query: 70 GPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNS 129
GPG+NAGVVDIG G VVFK+ESHNHPS IEPYQGAATGVGGI+RD+ +MGARP+A ++S
Sbjct: 81 GPGDNAGVVDIGDGWAVVFKVESHNHPSAIEPYQGAATGVGGIIRDVLSMGARPIALLDS 140
Query: 130 LRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKT 189
LRFG KT++++ GVVAGIA Y N GVPTVGGE F Y N +VN G+ +
Sbjct: 141 LRFGIPDIEKTRYIMKGVVAGIAAYGNEIGVPTVGGEFRFDESYVGNPLVNAGCVGLIRK 200
Query: 190 NAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAK-KRPTVQVGDPFTGKCL 248
I +A G G L+ LG KTGRDGIGGA+ AS E GE + RP+VQVGDPF K L
Sbjct: 201 EHIVKGEAIGPGDKLILLGGKTGRDGIGGATFASMELGEESEEEDRPSVQVGDPFMEKRL 260
Query: 249 LEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMML 308
EA LE + T + IQD+GA GL+C+ E+ +G LG +DLDKVP E GM+ YE+ L
Sbjct: 261 QEAILECVQTGLIKGIQDLGAGGLSCAISELAAKGGLGAEIDLDKVPLREPGMSPYEIWL 320
Query: 309 SESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALS 368
SESQERML+++ PE + EI K L +++G T++ V +GE V +LPI L+
Sbjct: 321 SESQERMLLVVAPEDVEEFLEICEKERLPAAVVGEVTDEPRLVVDWKGEPVVDLPIDVLA 380
Query: 369 DEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMIQSN 428
+AP+YDR EP + + D ++LLK+LSSPN++S+ W+YEQYD + N
Sbjct: 381 GKAPKYDRPVKEPKK-EEAGDVPEPEEPDLEEALLKVLSSPNVASKEWLYEQYDRSVGGN 439
Query: 429 SIQLPG--GDAGVIRVE--GHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATG 484
++ PG DA V+R+ K LA ++ PRY DP+ G K AVAE RN+ ATG
Sbjct: 440 TVVDPGPVADAAVLRISEDSGTGKGLAMTTGENPRYALLDPYAGAKLAVAEALRNLAATG 499
Query: 485 AKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFP 544
AKPLA+TDNLNFGNPEK E+MGQFV +V G+ EAC+ L P+V GNVS YNETNGQ I P
Sbjct: 500 AKPLALTDNLNFGNPEKPEVMGQFVAAVAGLAEACRALGIPVVGGNVSLYNETNGQPIPP 559
Query: 545 TPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDC 604
TP I VG++ D + + G L+ ++G L S + GPPP VD
Sbjct: 560 TPVIGAVGLVEDVRKVLTPELKKAGLLLYLLGETKDELGGSELAQVYHGLGDGPPPVVDL 619
Query: 605 HLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPF 664
EK + ++I K+ A HD+S GGL + LAEM + G++I L +
Sbjct: 620 AEEKKFFDAIRALIADGKVLAAHDVSDGGLAVALAEMAFAGGIGLEIDLDELGDDRLDAL 679
Query: 665 LFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSI----HNILNIPVATL 720
LF E GR +V ++ E ++ +EA +PL+ +G V G ++ + V L
Sbjct: 680 LFSESLGRVIVVVAEEEAEVEGAEA--VGVPLKVIGLVGGDHEIGAAVNEFLVPVSVEEL 737
Query: 721 QTKYES 726
+ +E
Sbjct: 738 REAWEG 743
>gnl|CDD|100034 cd02203, PurL_repeat1, PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), first repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM..
Length = 313
Score = 457 bits (1178), Expect = e-129
Identities = 154/336 (45%), Positives = 204/336 (60%), Gaps = 32/336 (9%)
Query: 36 EIGIISAMWNEHCSYKSSKKWLRTLPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNH 95
E+G+ + MW+EHC +KS K L+ + VVFK+E+HNH
Sbjct: 1 ELGMFAQMWSEHCRHKSFKSLLKMI-----------------------WAVVFKVETHNH 37
Query: 96 PSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHP--------KTKHLLSGV 147
PS IEP+ GAATGVGGI+RDI +MGARP+A ++ LRFG + P + +L GV
Sbjct: 38 PSAIEPFGGAATGVGGIIRDILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGV 97
Query: 148 VAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYL 207
VAGI+ Y N G+PTVGGEV F P Y N +VN GI + I SKA G G +V +
Sbjct: 98 VAGISDYGNCIGIPTVGGEVRFDPSYYGNPLVNVGCVGIVPKDHIVKSKAPGPGDLVVLV 157
Query: 208 GAKTGRDGIGGASMASEEFGEN-IAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQD 266
G +TGRDGIGGA+ +S+E EN RP VQVGDPF K L EA LE T ++ IQD
Sbjct: 158 GGRTGRDGIGGATFSSKELSENSSELDRPAVQVGDPFMEKKLQEAILEARETGLIVGIQD 217
Query: 267 MGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHK 326
+GA GL+ + EM +G LG +DLDKVP E GM+ +E+ +SESQERML+++ PE +
Sbjct: 218 LGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREPGMSPWEIWISESQERMLLVVPPEDLEE 277
Query: 327 AQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANL 362
I K L ++IG T+D R+ ++GE VA+L
Sbjct: 278 FLAICKKEDLEAAVIGEVTDDGRLRLYYKGEVVADL 313
Score = 70.2 bits (173), Expect = 2e-12
Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 47/259 (18%)
Query: 478 RNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGI-REACQ-ILDF------PIVSG 529
R+I++ GA+P+A+ D L FG+ + + S + I I D+ P V G
Sbjct: 56 RDILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGVVAGISDYGNCIGIPTVGG 115
Query: 530 NVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGN----DGCH---- 581
V F G P + VGI+P + + + GDL++++G DG
Sbjct: 116 EVRFDPSYYGN---PLVNVGCVGIVPK-DHIVKSKAPGPGDLVVLVGGRTGRDGIGGATF 171
Query: 582 ----LDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIIT 637
L + L+ + +G P +EK +L I D+ GGL
Sbjct: 172 SSKELSENSSELDRPAVQVGDPF-----MEKKLQEAILEARETGLIVGIQDLGAGGLSSA 226
Query: 638 LAEMTISSAKGMDIIL-----------PIEIEKDPKPFLFGEDQGRYVVCISPENQDLVM 686
++EM G +I L P EI E Q R ++ + PE+ + +
Sbjct: 227 VSEMAAKGGLGAEIDLDKVPLREPGMSPWEI-------WISESQERMLLVVPPEDLEEFL 279
Query: 687 SEANNKNIPLRYLGKVSGS 705
+ +++ +G+V+
Sbjct: 280 AICKKEDLEAAVIGEVTDD 298
>gnl|CDD|100035 cd02204, PurL_repeat2, PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), second
repeat. FGAR-AT catalyzes the ATP-dependent conversion
of formylglycinamide ribonucleotide (FGAR) and glutamine
to formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM..
Length = 264
Score = 301 bits (773), Expect = 6e-82
Identities = 110/268 (41%), Positives = 147/268 (54%), Gaps = 5/268 (1%)
Query: 436 DAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLN 495
DA V+R+ G K LA S+ PRY DP+ G AVAE RN++A GA PLAITD LN
Sbjct: 1 DAAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLAITDCLN 60
Query: 496 FGNPEK-EEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGIL 554
FGNPEK E MGQ V +V G+ +AC+ L P++ G S YNET G +I PT I VG++
Sbjct: 61 FGNPEKPEGEMGQLVEAVLGLGDACRALGTPVIGGKDSLYNETEGVAIPPTLVIGAVGVV 120
Query: 555 PDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFV 614
D + +D EGDL+ +IG L S Y+L G PP VD EK V
Sbjct: 121 DDVRKIVTLDFKKEGDLLYLIGETKDELGGSEYALAYHGLGGGAPPLVDLEREKALFDAV 180
Query: 615 LSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYV 674
+I + + HD+S GGL + LAEM + G ++ L + +D LF E GR +
Sbjct: 181 QELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDDAED--ELLFSESLGRVL 238
Query: 675 VCISPENQDLVMSEANNKNIPLRYLGKV 702
V + PEN+++ EA +P +G V
Sbjct: 239 VEVKPENEEVF--EAEEAGVPATVIGTV 264
Score = 74.1 bits (183), Expect = 1e-13
Identities = 70/280 (25%), Positives = 111/280 (39%), Gaps = 27/280 (9%)
Query: 75 AGVVDIGGGD--CVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRF 132
A V+ I G + + S ++PY GAA V +R++ +GA P+A + L F
Sbjct: 2 AAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLAITDCLNF 61
Query: 133 GAIHHPKTK-HLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN------TFAAG 185
G P+ + L V G+ + G P +GG+ YN V A G
Sbjct: 62 GNPEKPEGEMGQLVEAVLGLGDACRALGTPVIGGKDSL---YNETEGVAIPPTLVIGAVG 118
Query: 186 IAK-TNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFT 244
+ I + + G L +G G ++A G P V D
Sbjct: 119 VVDDVRKIVTLDFKKEGDLLYLIGETKDELGGSEYALAYHGLGGGAP---PLV---DLER 172
Query: 245 GKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAY 304
K L +A EL+ V++ D+ GL + EM G LG +DL K
Sbjct: 173 EKALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDD------AED 226
Query: 305 EMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT 344
E++ SES R+L+ + PE ++ + G+ ++IG
Sbjct: 227 ELLFSESLGRVLVEVKPE--NEEVFEAEEAGVPATVIGTV 264
>gnl|CDD|37118 KOG1907, KOG1907, KOG1907, Phosphoribosylformylglycinamidine synthase
[Nucleotide transport and metabolism].
Length = 1320
Score = 177 bits (450), Expect = 1e-44
Identities = 161/713 (22%), Positives = 282/713 (39%), Gaps = 84/713 (11%)
Query: 86 VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG--ARPVAAMNSLRFGAIHHPKTKH- 142
++FK E+HNHP+ + P+ GA TG GG +RD G + +A G ++ P K
Sbjct: 306 LLFKAETHNHPTAVSPFPGATTGTGGRIRDEGATGRGSYEIAGTAGYSVGDLNIPGYKQP 365
Query: 143 -----------------LLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNT---- 181
++ G + Y N FG P + G + + +++
Sbjct: 366 WEDLDFGYPYHIASPLDIMIEASNGASDYGNKFGEPVISG---YARTFGMRVLLENGERR 422
Query: 182 -------FAAGIAKTNAIFSSKAR-GIGLPLVYLGAKTGRDGIGGASMASEEFGENIAK- 232
F+ GI + K G L+ +G R G+GG + +S GE A+
Sbjct: 423 EYHKPIMFSGGIGTIRKQHARKEPIAPGQLLIKIGGPVYRIGVGGGAASSVVQGEGSAEL 482
Query: 233 KRPTVQVGDP-FTGKC--LLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITL 289
VQ GD K ++ AC EL + + +I D GA G E+ +LG T
Sbjct: 483 DFAAVQRGDAEMERKLQRVVRACAELGENNPIQSIHDQGAGGNGNVLKELVEDNDLGATF 542
Query: 290 DLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKL 349
D + M+ E+ +E QE +++ E + I + S++G T ++
Sbjct: 543 DSRTFQLGDPSMSPMEIWCAEYQENYALLVKAEDLDILESICKRERCPVSVVGEVTGEQR 602
Query: 350 FRVIHR--GEEVANLPIKALSDEAPEYDRAWCEPITIPPSN--PQLLCSDEDCTKSLLKL 405
++ + E +L ++ L + P+ R + P L S +L ++
Sbjct: 603 VILLDKLAKETAIDLEMRQLLGKPPKMSR----KLKRAPRVLKKLELPSGLTLRDALERV 658
Query: 406 LSSPNLSSRRWVYEQYDTMIQS--------NSIQLPGGDAGVIRVEGHETKALAFSSDVT 457
L P+++S+R++ + D + +Q+P D V +T A +
Sbjct: 659 LRLPSVASKRFLTTKVDRSVTGLIAQQQCVGPLQVPLADVAVTATSHFDTTGEAVAMGEQ 718
Query: 458 PRYVKADPFEGTKQAVAECWRNIIATGAKPLA-ITDNLNFGNPEKEEIMG-QFVHSVKGI 515
P D + VAE N++A L + + N+ K G + +V+ +
Sbjct: 719 PIKALIDAAASARMCVAEALMNLVAAKITSLKDVKLSGNWMWAAKHPGEGARLYDAVQAL 778
Query: 516 REACQILDFPIVSG--NVSFYNETNGQSIFP--TPTIAGVGILPDYSLMTRIDSAHEGD- 570
L I G ++S + +G+ + T I+ PD + D D
Sbjct: 779 CLGLCELGIAIDGGKDSLSMAMKWDGEVVKAPGTLVISAYAPCPDVTKTVTPDLKANVDG 838
Query: 571 -----LILMIGNDGCHLDCSMYSLECASSNIGPP-PKVDCHLEKNHGFF--VLSMINAKK 622
L + + N L S +L S IG P +D + ++ FF V ++N
Sbjct: 839 SKTSLLWIDLANSKMRLGGS--ALAQVYSQIGDDCPDLD-NFDELKKFFSVVQQLLNEGI 895
Query: 623 ITACHDISTGGLIITLAEMTISSAKGMDI-ILPIEIEKDPKPFLFGEDQGRYVVCISPEN 681
I A HDIS GGL++TL EM + G++I + LF E+ G V+ +S +
Sbjct: 896 ILAGHDISDGGLLVTLLEMAFAGNVGIEIDLDSPNQNIKLFDILFAEELG-AVLEVSDTD 954
Query: 682 QDLVMSEANNKNIPLRYLGKVSG-----STLSIHN----ILNIPVATLQTKYE 725
+ V+ + + Y+GK S + + I ILN ++ L+ ++E
Sbjct: 955 LEKVLEIFSEAGVKCEYIGKASAVFGQDAHIKISVNGHLILNEKLSDLREEWE 1007
>gnl|CDD|100029 cd02193, PurL, Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT) catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM..
Length = 272
Score = 166 bits (422), Expect = 2e-41
Identities = 76/270 (28%), Positives = 115/270 (42%), Gaps = 15/270 (5%)
Query: 86 VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG--ARPVAAMNSLRFGAIHHPKTKHL 143
K+E HNHP+ I+P GAATGVGG +RDI G A+P+A + A H P +
Sbjct: 3 EAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAGH-PGEDAI 61
Query: 144 LSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNN-----------NIIVNTFAAGIAKTNAI 192
L V G+A N G+P G+ + A G + +
Sbjct: 62 LYDAVKGVAELCNQLGLPIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRH 121
Query: 193 FSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEAC 252
+ G L+ +G G +G+GG ++AS + QV DP K EA
Sbjct: 122 TLPQLSTEGNALLLIGGGKGHNGLGGTALASVALSYRQLGDKS-AQVRDPAQEKGFYEAM 180
Query: 253 LELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQ 312
L+ ++A D GA GL + E+ G+ G+ +DL + E M E+ L ESQ
Sbjct: 181 QALVAAGKLLAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDEPDMEPLEIALFESQ 240
Query: 313 ERMLMILNPEKQHKAQEILNKWGLHFSIIG 342
ER ++ + E + +E ++G
Sbjct: 241 ERGVIQVRAEDRDAVEEAQYGLADCVHVLG 270
Score = 71.9 bits (176), Expect = 5e-13
Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 31/263 (11%)
Query: 464 DPFEGTKQAVAECWRNIIATG--AKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQI 521
DP G V R+I ATG AKP+A++ N E + +VKG+ E C
Sbjct: 17 DPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAGHPGEDAILY-DAVKGVAELCNQ 75
Query: 522 LDFPIVSGNVSFYNETNGQSIF--------PTPTIAGVGILPDYSLMTRIDSAHEGDLIL 573
L PI G +T Q P+ I+ G + D T + EG+ +L
Sbjct: 76 LGLPIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRH-TLPQLSTEGNALL 134
Query: 574 MI----GNDGCH------LDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKI 623
+I G++G + S L S+ + P EK + +++ A K+
Sbjct: 135 LIGGGKGHNGLGGTALASVALSYRQLGDKSAQVRDP-----AQEKGFYEAMQALVAAGKL 189
Query: 624 TACHDISTGGLIITLAEMTISSAKG----MDIILPIEIEKDPKPFLFGEDQGRYVVCISP 679
A HD GGL++ LAE+ + G + + E + +P E Q R V+ +
Sbjct: 190 LAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDEPDMEPLEIALFESQERGVIQVRA 249
Query: 680 ENQDLVMSEANNKNIPLRYLGKV 702
E++D V + LG+
Sbjct: 250 EDRDAVEEAQYGLADCVHVLGQA 272
>gnl|CDD|145754 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain.
This family includes Hydrogen expression/formation
protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
function of the C-terminal domain of AIR synthase is
unclear, but the cleft formed between N and C domains is
postulated as a sulphate binding site.
Length = 150
Score = 114 bits (288), Expect = 8e-26
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 201 GLPLVYLGAKTGRDGIGGAS-MASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTD 259
G L+ LG+ G+GG+ + E V +GDP L+ L L
Sbjct: 3 GDVLILLGS----SGLGGSGLSLVRKGLEE----DGAVPLGDPLLEPTLIYVVLLLAALG 54
Query: 260 AVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMIL 319
V A D+ GL + EM +G +DLDKVP +E + EM+ SE+Q R L+++
Sbjct: 55 LVKAAHDITGGGLAGALAEMAPASGVGAEIDLDKVPIFDELLLPLEMLFSENQGRGLVVV 114
Query: 320 NPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIH 354
PE+ IL + GL ++IG T ++
Sbjct: 115 VPEEAEAVLAILEEEGLPAAVIGEVTAGGGLELVV 149
Score = 88.6 bits (220), Expect = 5e-18
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 568 EGDLILMIGNDGCHLDCSMYSL-ECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITAC 626
GD+++++G+ G S SL G P D LE + VL + + A
Sbjct: 2 PGDVLILLGSSGLG--GSGLSLVRKGLEEDGAVPLGDPLLEPTLIYVVLLLAALGLVKAA 59
Query: 627 HDISTGGLIITLAEMTISSAKGMDIILP----IEIEKDPKPFLFGEDQGRYVVCISPENQ 682
HDI+ GGL LAEM +S G +I L + P LF E+QGR +V + PE
Sbjct: 60 HDITGGGLAGALAEMAPASGVGAEIDLDKVPIFDELLLPLEMLFSENQGRGLVVVVPEEA 119
Query: 683 DLVMSEANNKNIPLRYLGKV 702
+ V++ + +P +G+V
Sbjct: 120 EAVLAILEEEGLPAAVIGEV 139
>gnl|CDD|100027 cd00396, PurM-like, AIR (aminoimidazole ribonucleotide) synthase
related protein. This family includes Hydrogen
expression/formation protein HypE, AIR synthases, FGAM
(formylglycinamidine ribonucleotide) synthase and
Selenophosphate synthetase (SelD). The N-terminal domain
of AIR synthase forms the dimer interface of the
protein, and is suggested as a putative ATP binding
domain..
Length = 222
Score = 109 bits (275), Expect = 2e-24
Identities = 63/264 (23%), Positives = 98/264 (37%), Gaps = 49/264 (18%)
Query: 86 VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLS 145
+ + N P I P+ G VGG + DI MGARP+A + SL L
Sbjct: 2 LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEVDI---LE 58
Query: 146 GVVAGIAGYSNSFGVPTVGGEVEFLPCYN-NNIIVNTFAAGIAKTNAIFSSKARGIGLPL 204
VV G+A N GVP VGG P + + + FA G+ + + + S G L
Sbjct: 59 DVVDGVAEACNQLGVPIVGGHTSVSPGTMGHKLSLAVFAIGVVEKDRVIDSSGARPGDVL 118
Query: 205 VYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAI 264
+ G ++A LEL+ V A+
Sbjct: 119 ILTG----------------------------------------VDAVLELVAAGDVHAM 138
Query: 265 QDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAY-----EMMLSESQERMLMIL 319
D+ GL + E+ +G +DL+ +P E E +L S +L+ +
Sbjct: 139 HDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIEEALLFNSSGGLLIAV 198
Query: 320 NPEKQHKAQEILNKWGLHFSIIGI 343
E+ +LN G+ ++IG
Sbjct: 199 PAEEADAVLLLLNGNGIDAAVIGR 222
Score = 86.7 bits (215), Expect = 2e-17
Identities = 62/266 (23%), Positives = 105/266 (39%), Gaps = 57/266 (21%)
Query: 449 ALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQF 508
+LA S+D + +P+ G + AV +I A GA+P+A+ +L+ N + +I+
Sbjct: 1 SLAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEVDILEDV 60
Query: 509 VHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHE 568
V G+ EAC L PIV G+ S T G + + +G++ + A
Sbjct: 61 ---VDGVAEACNQLGVPIVGGHTSVSPGTMG--HKLSLAVFAIGVVEK-DRVIDSSGARP 114
Query: 569 GDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHD 628
GD++++ G D VL ++ A + A HD
Sbjct: 115 GDVLILTGVD----------------------------------AVLELVAAGDVHAMHD 140
Query: 629 ISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKP-------------FLFGEDQGRYVV 675
I+ GGL+ TL E+ + A G+ I++E P L G ++
Sbjct: 141 ITDGGLLGTLPEL--AQASGVGAE--IDLEAIPLDEVVRWLCVEHIEEALLFNSSGGLLI 196
Query: 676 CISPENQDLVMSEANNKNIPLRYLGK 701
+ E D V+ N I +G+
Sbjct: 197 AVPAEEADAVLLLLNGNGIDAAVIGR 222
>gnl|CDD|144251 pfam00586, AIRS, AIR synthase related protein, N-terminal domain.
This family includes Hydrogen expression/formation
protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
N-terminal domain of AIR synthase forms the dimer
interface of the protein, and is suggested as a putative
ATP binding domain.
Length = 95
Score = 102 bits (257), Expect = 3e-22
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 72 GENAGVVDIGGGDCVVF---KMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMN 128
G++A V+ +G G +V + +H H + +PY G AT V G L D+ MGA+P+A ++
Sbjct: 1 GDDAAVIRLGEGPALVVTTDGVVTHVHFAA-DPYDGGATAVAGNLSDLAAMGAKPLAFLD 59
Query: 129 SLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEV 167
L G P+ L +V GIA +N FGVP VGG+
Sbjct: 60 GLALGEGLDPEW---LEEIVRGIAEAANEFGVPLVGGDT 95
Score = 93.7 bits (234), Expect = 2e-19
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 434 GGDAGVIRVEGHETKALAFSSDVTPRYVK--ADPFEGTKQAVAECWRNIIATGAKPLAIT 491
G DA VIR+ AL ++D +V ADP++G AVA ++ A GAKPLA
Sbjct: 1 GDDAAVIRLGEG--PALVVTTDGVVTHVHFAADPYDGGATAVAGNLSDLAAMGAKPLAFL 58
Query: 492 DNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNV 531
D L G E + + V+GI EA P+V G+
Sbjct: 59 DGLALGEGLDPEWLEEI---VRGIAEAANEFGVPLVGGDT 95
>gnl|CDD|32327 COG2144, COG2144, Selenophosphate synthetase-related proteins
[General function prediction only].
Length = 324
Score = 75.3 bits (185), Expect = 6e-14
Identities = 63/299 (21%), Positives = 121/299 (40%), Gaps = 40/299 (13%)
Query: 414 RRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSD-VTPRYVKADPFE-GTKQ 471
+ V E D + I G DA VIRV L ++D + + + ADP+ G
Sbjct: 23 KDAVREFLDEFYGAEVILDFGDDAAVIRVGD---GKLLIAADGIWGKLIDADPWWAGYCS 79
Query: 472 AVAECWRNIIATGAKPLAITDNLNFGNPEK-EEIMGQFVHSVKGIREACQILDFPIVSGN 530
+ ++ A G +P+ D ++ + ++ EI+ +G+R+ + PIV G
Sbjct: 80 VLVNV-NDVAAMGGEPVGAVDAISAKSEDQAREIL-------EGLRKGARKFGVPIVGG- 130
Query: 531 VSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLE 590
T+ + + + G++ + + +A GDL++ +G+ + + L
Sbjct: 131 -----HTHPDTPYCVLDVVIGGLIAEEPI-ITSGTAKPGDLLIFVGDLDGKPYPN-FPLN 183
Query: 591 CASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMD 650
++ + K LE L AK + A D+S GGL+ TL + S G
Sbjct: 184 WDTTTMKAKEKFRAQLE-------LLREGAKLVKAGKDVSNGGLLGTLLMLLEKSRVGAG 236
Query: 651 IILPIEIEKDPKPFLFGEDQ-------GRYVVCISPENQDLVMSEANNKNIPLRYLGKV 702
++++ P P Q +V+ + PE+ + V+ + P +G+V
Sbjct: 237 ----VDLDSIPYPADVDFRQWLKRYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEV 291
Score = 56.8 bits (137), Expect = 2e-08
Identities = 55/307 (17%), Positives = 112/307 (36%), Gaps = 28/307 (9%)
Query: 61 PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120
G VI G++A V+ +G G ++ +P+ V + D+ MG
Sbjct: 32 EFYGAEVILDFGDDAAVIRVGDGKLLIAADGIWGKLIDADPWWAGYCSVLVNVNDVAAMG 91
Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180
PV A++++ K++ ++ G+ + FGVP VGG Y +++
Sbjct: 92 GEPVGAVDAIS------AKSEDQAREILEGLRKGARKFGVPIVGGHTHPDTPYC---VLD 142
Query: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240
G+ I +S G L+++G G+ P
Sbjct: 143 VVIGGLIAEEPIITSGTAKPGDLLIFVGDLDGK----------------PYPNFPLNWDT 186
Query: 241 DPFTGKCLLEACLELMN--TDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE 298
K A LEL+ V A +D+ GL + + + + +G +DLD +P
Sbjct: 187 TTMKAKEKFRAQLELLREGAKLVKAGKDVSNGGLLGTLLMLLEKSRVGAGVDLDSIP-YP 245
Query: 299 EGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEE 358
+ + + ++ ++PE + ++ + G ++IG + + R+
Sbjct: 246 ADVDFRQWLKRYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIEEPVLRIGDGELV 305
Query: 359 VANLPIK 365
++
Sbjct: 306 SEVFDLE 312
>gnl|CDD|30657 COG0309, HypE, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 339
Score = 67.9 bits (166), Expect = 1e-11
Identities = 70/298 (23%), Positives = 118/298 (39%), Gaps = 34/298 (11%)
Query: 72 GENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVG-----GILRDIFTMGARPVAA 126
GE+A ++D+G G + F + I+P +G G D+ GA+P
Sbjct: 38 GEDAAIIDLGDGV-LAFTTDPF----VIDPLFFPGGDIGKLAVHGTANDVAVSGAKPRYL 92
Query: 127 MNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGI 186
L + L ++ I + GV V G+ + +P + I++NT GI
Sbjct: 93 SVGL---ILPEGLPIEDLERILKSIDEEAEEAGVSIVTGDTKVVPGGKDPIVINTTGIGI 149
Query: 187 AKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAK--KRPTVQVGDPFT 244
+ S G ++ TG GI GAS+ + FGE + +
Sbjct: 150 IDKEILVSPSGARPGDAVIV----TGTIGIHGASILAHRFGEELETELGSDCAPLAKLV- 204
Query: 245 GKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE----- 299
K LL E AV A+ D GL + EM +GI+++ +K+P EE
Sbjct: 205 -KALLSVVGE-ALAAAVTAMHDATRGGLAGALNEMAEASGVGISIEEEKIPVREEVRGVC 262
Query: 300 ---GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGL-HFSIIGITTNDKLFRVI 353
G+ E+ ++ ++++ + PE + E L GL +IIG +K +
Sbjct: 263 ELLGLDPLELA---NEGKLVIAVPPEHAEEVLEALRSHGLKDAAIIGEVVEEKGGVGL 317
Score = 54.9 bits (132), Expect = 9e-08
Identities = 67/275 (24%), Positives = 104/275 (37%), Gaps = 41/275 (14%)
Query: 434 GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGT---KQAVAECWRNIIATGAKPLAI 490
G DA +I + LAF++D P + F G K AV ++ +GAKP +
Sbjct: 38 GEDAAIIDLGDGV---LAFTTD--PFVIDPLFFPGGDIGKLAVHGTANDVAVSGAKPRYL 92
Query: 491 TDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAG 550
+ L PE + +K I E + IV+G+ + T G
Sbjct: 93 SVGLIL--PEGLP-IEDLERILKSIDEEAEEAGVSIVTGDTKVVPGGKDPIVINT---TG 146
Query: 551 VGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNH 610
+GI+ L A GD +++ G G H + + DC
Sbjct: 147 IGIIDKEIL-VSPSGARPGDAVIVTGTIGIHGASILAHRF--GEELETELGSDCAPLAKL 203
Query: 611 GFFVLSM---INAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPF--- 664
+LS+ A +TA HD + GGL L EM +S G I IE++ P
Sbjct: 204 VKALLSVVGEALAAAVTAMHDATRGGLAGALNEMAEASGVG------ISIEEEKIPVREE 257
Query: 665 ------LFGED------QGRYVVCISPENQDLVMS 687
L G D +G+ V+ + PE+ + V+
Sbjct: 258 VRGVCELLGLDPLELANEGKLVIAVPPEHAEEVLE 292
>gnl|CDD|100030 cd02194, ThiL, ThiL (Thiamine-monophosphate kinase) plays a dual
role in de novo biosynthesis and in salvage of exogenous
thiamine. Thiamine salvage occurs in two steps, with
thiamine kinase catalyzing the formation of thiamine
phosphate, and ThiL catalyzing the conversion of this
intermediate to thiamine pyrophosphate. The N-terminal
domain of ThiL binds ATP and is related to the
ATP-binding domains of hydrogen expression/formation
protein HypE, the AIR synthases, FGAM synthase and
selenophosphate synthetase (SelD)..
Length = 291
Score = 61.0 bits (149), Expect = 1e-09
Identities = 70/300 (23%), Positives = 110/300 (36%), Gaps = 62/300 (20%)
Query: 433 PGGDAGVIRVEGHE----TKALA----FSSDVTPRYVKADPFEGTKQAVAECWRN---II 481
G DA V++ G T L F D TP + G K A+A N +
Sbjct: 23 IGDDAAVLKPPGGRLVVTTDTLVEGVHFPPDTTPEDI------GWK-ALA---VNLSDLA 72
Query: 482 ATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQS 541
A GA+PL +L EE + +F +G+ EA P+V G+ +
Sbjct: 73 AMGARPLGFLLSLGLPPDTDEEWLEEFY---RGLAEAADRYGVPLVGGDT---TSGSELV 126
Query: 542 IFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPK 601
I ++ +G + + R A GDL+ + G G D + L + P +
Sbjct: 127 I----SVTALGEVEKGKPLRR-SGAKPGDLLYVTGTLG---D-AAAGLALLLGGLKLPEE 177
Query: 602 VDCHLEKNHGFF-----VLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDII---L 653
+ L + H + + TA DIS GL+ L + +S G I L
Sbjct: 178 LYEELIERHLRPEPRLELGRALAEGLATAMIDISD-GLLADLGHIAEASGVGAVIDLDKL 236
Query: 654 PIEIE-------KDPKPFLF--GEDQGRY--VVCISPENQDLVMSEANNKNIPLRYLGKV 702
P+ +D GED Y + + PEN + A +P+ +G+V
Sbjct: 237 PLSPALRAAELGEDALELALSGGED---YELLFTVPPEN---AEAAAAKLGVPVTVIGRV 290
Score = 41.4 bits (98), Expect = 0.001
Identities = 80/315 (25%), Positives = 121/315 (38%), Gaps = 60/315 (19%)
Query: 55 KWLRTLPTTGKHVIQGPGENAGVVDIGGGDCVV----FKMESHNHPSYIEPYQGAATGVG 110
L G V+ G G++A V+ GG VV H P P +
Sbjct: 7 DRLFKRLGAGPGVLLGIGDDAAVLKPPGGRLVVTTDTLVEGVHFPPDT-TPEDIGWKALA 65
Query: 111 GILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFL 170
L D+ MGARP+ + SL + + L G+A ++ +GVP VGG+
Sbjct: 66 VNLSDLAAMGARPLGFLLSL---GLPPDTDEEWLEEFYRGLAEAADRYGVPLVGGDT--- 119
Query: 171 PCYNNNIIVNTFAAGIA-KTNAIFSSKARGIGLP--LVYLGAKTGRDGIGGASMA----- 222
+ ++++ A G K + S A+ P L+Y+ TG +G A+
Sbjct: 120 -TSGSELVISVTALGEVEKGKPLRRSGAK----PGDLLYV---TGT--LGDAAAGLALLL 169
Query: 223 ------SEEFGENIAK-KRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCS 275
E + E I + RP ++ G+ L E M D I D GL
Sbjct: 170 GGLKLPEELYEELIERHLRPEPRLE---LGRALAEGLATAM-ID----ISD----GLLAD 217
Query: 276 AIEMGNQGNLGITLDLDKVP------TCEEGMTAYEMMLS--ESQERMLMILNPEKQHKA 327
+ +G +DLDK+P E G A E+ LS E E +L + PE A
Sbjct: 218 LGHIAEASGVGAVIDLDKLPLSPALRAAELGEDALELALSGGEDYE-LLFTVPPENAEAA 276
Query: 328 QEILNKWGLHFSIIG 342
L G+ ++IG
Sbjct: 277 AAKL---GVPVTVIG 288
>gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup
1 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain..
Length = 298
Score = 59.5 bits (145), Expect = 4e-09
Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 48/308 (15%)
Query: 57 LRTLPTTGKHVIQGP--GENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILR 114
L+ L V+ GP GE+A VVD GG VV P V
Sbjct: 15 LKNLGADRDEVLVGPGGGEDAAVVDFGGKVLVV-----STDPITGAGKDAGWLAVHIAAN 69
Query: 115 DIFTMGARPVAAMNSLRFGAIHHPKTKH-LLSGVVAGIAGYSNSFGVPTVGGEVEFLPCY 173
DI T GARP + +L P T L ++ I + GV VGG E P
Sbjct: 70 DIATSGARPRWLLVTLLL----PPGTDEEELKAIMREINEAAKELGVSIVGGHTEVTPGV 125
Query: 174 NNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKK 233
II T A G + + + + G +V T GI G ++ + +F E + K+
Sbjct: 126 TRPIISVT-AIGKGEKDKLVTPSGAKPGDDIVM----TKGAGIEGTAILANDFEEELKKR 180
Query: 234 RPTVQVGDPFTGKCLLEAC--LELMNT--DAVIAIQD----MGAA---GLTCSAIEMGNQ 282
+ + L EA ++ +A+IA + M A G+ + E+
Sbjct: 181 ---------LSEEELREAAKLFYKISVVKEALIAAEAGVTAMHDATEGGILGALWEVAEA 231
Query: 283 GNLGITLDLDKVPTCEE--------GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKW 334
+G+ ++ DK+P +E G+ ++ S + +L+ + PEK + + L +
Sbjct: 232 SGVGLRIEKDKIPIRQETKEICEALGIDPLRLISSGT---LLITVPPEKGDELVDALEEA 288
Query: 335 GLHFSIIG 342
G+ S+IG
Sbjct: 289 GIPASVIG 296
Score = 51.1 bits (123), Expect = 1e-06
Identities = 54/232 (23%), Positives = 85/232 (36%), Gaps = 39/232 (16%)
Query: 434 GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDN 493
G DA V+ G K L S+D + + AV +I +GA+P +
Sbjct: 32 GEDAAVVDFGG---KVLVVSTDP----ITGAGKDAGWLAVHIAANDIATSGARPRWLLVT 84
Query: 494 LNF--GNPEKE--EIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIA 549
L G E+E IM + I EA + L IV G+ P ++
Sbjct: 85 LLLPPGTDEEELKAIMRE-------INEAAKELGVSIVGGHTEVTPGVT----RPIISVT 133
Query: 550 GVGILPDYSLMTRIDSAHEGDLILM---IGNDGCHLDCSMYSLECASSNIGPPPKVDCHL 606
+G L A GD I+M G +G + + + E + L
Sbjct: 134 AIGKGEKDKL-VTPSGAKPGDDIVMTKGAGIEGTAILANDFEEEL-KKRLSEE-----EL 186
Query: 607 EKNHGFFV-LSMINAKKI------TACHDISTGGLIITLAEMTISSAKGMDI 651
+ F +S++ I TA HD + GG++ L E+ +S G+ I
Sbjct: 187 REAAKLFYKISVVKEALIAAEAGVTAMHDATEGGILGALWEVAEASGVGLRI 238
>gnl|CDD|30956 COG0611, ThiL, Thiamine monophosphate kinase [Coenzyme metabolism].
Length = 317
Score = 56.8 bits (137), Expect = 2e-08
Identities = 73/315 (23%), Positives = 122/315 (38%), Gaps = 47/315 (14%)
Query: 65 KHVIQGPGENAGVVDIGGGDCVVFK----MESHNHPSYIEPYQGAATGVGGILRDIFTMG 120
+ V+ G G++A +VD G +V +E + P + P + L D+ MG
Sbjct: 19 EDVVLGIGDDAALVDAPEGQRLVVTTDMLVEGTHFPPDMTPEDLGWKALAVNLSDLAAMG 78
Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180
ARP A + SL + + L + GI + +GV +GG+ + ++
Sbjct: 79 ARPKAFLLSL---GLPPDLDEEWLEALADGIFEAAKKYGVKLIGGDTNR-----GPLSIS 130
Query: 181 TFAAGIAKTN-AIFSSKARGIGLPLVYLGAKTGRDGIGGASMA-------SEEFGENIAK 232
A G+ A+ S A+ G + TG G A + E+ E I +
Sbjct: 131 VTAIGVLPKGRALLRSGAK-PGDLVAV----TGTLGRSAAGLELLLNVLGPEDEEELIER 185
Query: 233 -KRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDL 291
RPT +V A +L + A + I D GL + +GI +D
Sbjct: 186 HLRPTPRVELGL-------ALAKLAS--AAMDISD----GLAADLGHIARASGVGIVIDE 232
Query: 292 DKVP-------TCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT 344
D +P +E E LS ++ L+ PE+ +A + L +IIG
Sbjct: 233 DLLPLSDAVLEALDELGDPLEWALSGGEDYELVFTVPEENREALLDALR-SLGVTIIGRV 291
Query: 345 TNDKLFRVIHRGEEV 359
T + V+ G+E+
Sbjct: 292 TEGEGVVVLVDGKEL 306
>gnl|CDD|100028 cd02192, PurM-like3, AIR synthase (PurM) related protein, subgroup
3 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain..
Length = 283
Score = 52.6 bits (127), Expect = 4e-07
Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 36/236 (15%)
Query: 433 PGGDAGVIRVEGHETKALAFSSD-VTPRYVKADP-FEGTKQAVAECWRNIIATGAKPLAI 490
G DA I L ++D + P V+ADP + G + +I A G +PLA+
Sbjct: 34 LGDDAAAIPDGD---GYLLLAADGIWPSLVEADPWWAGYCSVLVNV-SDIAAMGGRPLAM 89
Query: 491 TDNLNFGNPEK-EEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIA 549
D L + E +++ +G+R+A + PIV G+ T+ S + ++A
Sbjct: 90 VDALWSPSAEAAAQVL-------EGMRDAAEKFGVPIVGGH------THPDSPYNALSVA 136
Query: 550 GVGILPDYSLMTRIDSAHEGDLILMIGN-DGCHLDCSMYSLECASSNIGPPPKVDCHLEK 608
+G + A GD +++ + DG + + + P + +
Sbjct: 137 ILGRAR--KDLLISFGAKPGDRLILAIDLDGRVHPSPPPNWDATTMK--SPALLRRQIA- 191
Query: 609 NHGFFVLSMINAKK-ITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKP 663
+L + + + A DIS G+I TL + +S G + I+++ P+P
Sbjct: 192 -----LLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAE----IDLDAIPRP 238
Score = 46.1 bits (110), Expect = 3e-05
Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 38/237 (16%)
Query: 67 VIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIE--PYQGAATGVGGILRDIFTMGARPV 124
V G++A + G G ++ + PS +E P+ V + DI MG RP+
Sbjct: 30 VAADLGDDAAAIPDGDGY-LLLAADGI-WPSLVEADPWWAGYCSVLVNVSDIAAMGGRPL 87
Query: 125 AAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAA 184
A +++L P + V+ G+ + FGVP VGG YN ++
Sbjct: 88 AMVDAL-----WSPSAEAAAQ-VLEGMRDAAEKFGVPIVGGHTHPDSPYNA---LSVAIL 138
Query: 185 GIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFT 244
G A+ + + S A+ G L+ GR N D T
Sbjct: 139 GRARKDLLISFGAK-PGDRLILAIDLDGRVH--------PSPPPNW----------DATT 179
Query: 245 GKC--LLEACLELMNT----DAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVP 295
K LL + L+ V A +D+ G+ + + +G +DLD +P
Sbjct: 180 MKSPALLRRQIALLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAEIDLDAIP 236
>gnl|CDD|30499 COG0150, PurM, Phosphoribosylaminoimidazole (AIR) synthetase
[Nucleotide transport and metabolism].
Length = 345
Score = 50.2 bits (120), Expect = 2e-06
Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 52/265 (19%)
Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532
VA C +++ GA+PL D L G + E+ Q VKGI E C+ +V G
Sbjct: 85 VAMCVNDLVVQGAEPLFFLDYLATGKLD-PEVAAQI---VKGIAEGCKQAGCALVGG--- 137
Query: 533 FYNETNGQSIFPTPTIAG--------VGILPDYSLMTRIDSAHEGDLILMIGNDGCH--- 581
ET + P G VG++ ++ EGD+I+ + + G H
Sbjct: 138 ---ET---AEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVK-EGDVIIGLASSGLHSNG 190
Query: 582 -------LDCSMYSLECASSNIGPPPKVDCHLEKNHGFF--VLSMINAKKITACHDISTG 632
++ S + + LE + VL++I + I+ G
Sbjct: 191 YSLVRKIIEESGLDYDDELPEELGKTLGEELLEPTRIYVKPVLALIKEGDVKGMAHITGG 250
Query: 633 GLIITLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGR---------------YVVCI 677
G + L + +G+ ++ P F + + G V+ +
Sbjct: 251 GFVENLPRVL---PEGLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIV 307
Query: 678 SPENQDLVMSEANNKNIPLRYLGKV 702
E+ + ++ + +G+V
Sbjct: 308 PEEDAEKALALLKEQGETAYVIGRV 332
Score = 38.6 bits (90), Expect = 0.005
Identities = 69/358 (19%), Positives = 115/358 (32%), Gaps = 96/358 (26%)
Query: 62 TTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAAT-GVGGILR------ 114
T V+ G G AG+ D+G Y +P + T GVG L
Sbjct: 30 TRRPEVMGGLGGFAGLFDLGQA--------------YYKPVLVSGTDGVGTKLLLAEDAG 75
Query: 115 ---------------DIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFG 159
D+ GA P+ ++ L G + ++ G+ G G
Sbjct: 76 KHDTIGIDLVAMCVNDLVVQGAEPLFFLDYLATGKLDPEVAAQIVKGIAEG----CKQAG 131
Query: 160 VPTVGGEVEFLP-CYNNNII-VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTG----- 212
VGGE +P Y + FA G+ + + I G ++ L + +G
Sbjct: 132 CALVGGETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVKEGDVIIGLAS-SGLHSNG 190
Query: 213 ---------RDGIGGASMASEEFGENIAKK--RPTVQVGDPFTGKCLLEACLELMNTDAV 261
G+ EE G+ + ++ PT + ++ L L+ V
Sbjct: 191 YSLVRKIIEESGLDYDDELPEELGKTLGEELLEPT---------RIYVKPVLALIKEGDV 241
Query: 262 IAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPT-------CEEGMTAYEMMLSESQER 314
+ + G + + +G LG +D P + G E M R
Sbjct: 242 KGMAHITGGGFVENLPRVLPEG-LGAVIDKPSWPPPPIFKWLQKAGNVEREEMY-----R 295
Query: 315 -------MLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIK 365
M++I+ E KA +L + G +IG RV EV + +
Sbjct: 296 TFNMGVGMVLIVPEEDAEKALALLKEQGETAYVIG--------RVEAGEGEVVGVKLN 345
>gnl|CDD|100031 cd02195, SelD, Selenophosphate synthetase (SelD) catalyzes the
conversion of selenium to selenophosphate which is
required by a number of bacterial, archaeal and
eukaryotic organisms for synthesis of Secys-tRNA, the
precursor of selenocysteine in selenoenzymes. The
N-terminal domain of SelD is related to the ATP-binding
domains of hydrogen expression/formation protein HypE,
the AIR synthases, and FGAM synthase and is thought to
bind ATP..
Length = 287
Score = 42.5 bits (101), Expect = 4e-04
Identities = 71/314 (22%), Positives = 108/314 (34%), Gaps = 102/314 (32%)
Query: 67 VIQGPGENAGVVDIGGGDCVV-----FKMESHNHPSYIE-PY-QG--AATGVGGILRDIF 117
V G G++A V + GG +V F P ++ PY G AA L DI+
Sbjct: 36 VGLGTGDDAAVYRLPGGLALVQTTDFF-------PPIVDDPYLFGRIAAANA---LSDIY 85
Query: 118 TMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGG------EVEFLP 171
MGA+P++A+ + + +L ++AG G VGG E ++
Sbjct: 86 AMGAKPLSALAIVTLPRKLPALQEEVLREILAGGKDKLREAGAVLVGGHTIEGPEPKY-- 143
Query: 172 CYNNNIIVNTFAA-GIAKTNAIFSSKARGIGLPLVYLGAKTGRD--------GIG---GA 219
+ G+ N I + GAK G D G G A
Sbjct: 144 ---------GLSVTGLVHPNKILRNS-----------GAKPG-DVLILTKPLGTGILFAA 182
Query: 220 SMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELM---NTDAVIAIQDMGAA------ 270
MA GE ++A LE M N A ++ GA
Sbjct: 183 EMAGLARGE-------------------DIDAALESMARLNRAAAELLRKYGAHACTDVT 223
Query: 271 --GLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQ 328
GL +EM + +DLDK+P + T+ ++ + + PE
Sbjct: 224 GFGLLGHLLEMARASGVSAEIDLDKLPLLQ---TSGGLLAA---------VPPEDAAALL 271
Query: 329 EILNKWGLHFSIIG 342
+L G +IIG
Sbjct: 272 ALLKAGGPPAAIIG 285
Score = 31.7 bits (73), Expect = 0.77
Identities = 69/291 (23%), Positives = 110/291 (37%), Gaps = 64/291 (21%)
Query: 433 PGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITD 492
G DA V R+ AL ++D P V DP+ + A A +I A GAKPL+
Sbjct: 40 TGDDAAVYRL--PGGLALVQTTDFFPPIV-DDPYLFGRIAAANALSDIYAMGAKPLSALA 96
Query: 493 NLNFGNPEKEEIMGQFV--HSVKGIREACQILDFPIVSGNVSFYNETNGQSIF-PTPTIA 549
+ P K + + V + G ++ + +V G G +I P P
Sbjct: 97 IVTL--PRKLPALQEEVLREILAGGKDKLREAGAVLV-G---------GHTIEGPEPKYG 144
Query: 550 GV--GILPDYSLMTRIDSAHEGD-LIL-------------MIG-NDGCHLDCSMYSLECA 592
G++ ++ A GD LIL M G G +D ++ S+ A
Sbjct: 145 LSVTGLVHPNKILRN-SGAKPGDVLILTKPLGTGILFAAEMAGLARGEDIDAALESM--A 201
Query: 593 SSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTG-GLIITLAEMTISSAKGMDI 651
N + L + +G AC D+ TG GL+ L EM +S
Sbjct: 202 RLN-----RAAAELLRKYG-----------AHACTDV-TGFGLLGHLLEMARASG----- 239
Query: 652 ILPIEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV 702
+ EI+ D P L + G + + PE+ +++ P +G+V
Sbjct: 240 -VSAEIDLDKLPLL--QTSGGLLAAVPPEDAAALLALLKAGGPPAAIIGEV 287
>gnl|CDD|32156 COG1973, HypE, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 449
Score = 40.3 bits (94), Expect = 0.002
Identities = 68/340 (20%), Positives = 124/340 (36%), Gaps = 49/340 (14%)
Query: 54 KKWLRTLPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGIL 113
+K TG V ++AGVV I VV H+ S P+ L
Sbjct: 93 EKLAELAGKTGAVVSPEELDDAGVVRIENDYIVVAIDGIHSRLSEF-PFLAGFHVTRAAL 151
Query: 114 RDIFTMGARPVAAMNSLRFGAIHHPKTKHL--------LSGVVAGIAGYSNSFGVPTVGG 165
RD++ MGARPVA ++ + HL L AG+ S + GVP + G
Sbjct: 152 RDVYVMGARPVALISDI-----------HLADDGDVGKLFDFTAGVTAVSEAVGVPLLAG 200
Query: 166 EVEFLP---CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMA 222
+ + ++ A GI+K+ +A + L+ GA GG ++A
Sbjct: 201 STLRIGGDMVLGDRLVGAVGAIGISKSELTPRRRAEPGDVILMTEGA-------GGGTIA 253
Query: 223 SEEFGENIAKK-RPTVQVGDPFTGKCLLEACLELMNTD---AVIAIQDMGAAGLTCSAIE 278
+ + T+ V + AC ++ + V ++ D+ G+ A+E
Sbjct: 254 TTAIYHGMHDVVEETLNVDF-------IRACEAIVRSGLLSDVHSMTDVTNGGIRGDALE 306
Query: 279 MGNQGNLGITLDLDKV-----PTCEEGMTAYEM-MLSESQERMLMILNPEKQHKAQEILN 332
+ + + D +KV P + + + L S + +++I + ++ L
Sbjct: 307 ISKTAGVSLVFDEEKVRSLINPKVLKMLEELNIDPLGVSIDSLMIIAPEDVADLVKKALR 366
Query: 333 KWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAP 372
G+ +G ++ G E +K E+
Sbjct: 367 GAGVRAEEVGRVEEGGQGVILVDGGE--ERELKPRFRESA 404
Score = 34.5 bits (79), Expect = 0.096
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 10/145 (6%)
Query: 436 DAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLN 495
DAGV+R+E + + D + PF R++ GA+P+A+ +++
Sbjct: 113 DAGVVRIE---NDYIVVAIDGIHSRLSEFPFLAGFHVTRAALRDVYVMGARPVALISDIH 169
Query: 496 FGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVG-IL 554
+ + +G+ G+ + + P+++G+ G + + VG I
Sbjct: 170 LAD---DGDVGKLFDFTAGVTAVSEAVGVPLLAGSTL---RIGGDMVLGDRLVGAVGAIG 223
Query: 555 PDYSLMTRIDSAHEGDLILMIGNDG 579
S +T A GD+ILM G
Sbjct: 224 ISKSELTPRRRAEPGDVILMTEGAG 248
>gnl|CDD|100036 cd02691, PurM-like2, AIR synthase (PurM) related protein, archaeal
subgroup 2 of unknown function. The family of PurM
related proteins includes Hydrogen expression/formation
protein HypE, AIR synthases, FGAM synthase and
Selenophosphate synthetase (SelD). They all contain two
conserved domains and seem to dimerize. The N-terminal
domain forms the dimer interface and is a putative ATP
binding domain..
Length = 346
Score = 39.7 bits (93), Expect = 0.003
Identities = 75/350 (21%), Positives = 125/350 (35%), Gaps = 70/350 (20%)
Query: 63 TGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGAR 122
TG+ I ++AGV VV H+ S P+ LRD+ MGAR
Sbjct: 27 TGEVSIVAQDDDAGVDAADVEYIVVAIDGIHSRLSDF-PFLAGFHATRAALRDVMVMGAR 85
Query: 123 PVAAMNSLRFGAIHHPKTKHL--------LSGVVAGIAGYSNSFGVPTVGGEVEFLPCYN 174
PVA ++ + HL L AG+ S + GVP V G L
Sbjct: 86 PVALLSDI-----------HLADDGDVGKLFDFTAGVTAVSEATGVPLVAGST--LRIGG 132
Query: 175 NNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTG-----RDGIGGASMASEEFGEN 229
+ ++ + G+ A+ SK P A+ G +G GG ++ +
Sbjct: 133 DMVLGDRLVGGVG---AVGRSK----SDPSRRKNAEPGDLILMTEGAGGGTITTTA---- 181
Query: 230 IAKKRP-----TVQVGDPFTGKCLLEACLELMNT---DAVIAIQDMGAAGLTCSAIEMGN 281
I P T+ V ++AC L ++ V ++ D+ G+ A+E+
Sbjct: 182 IYHGMPDVVEETLNVDF-------IKACEALRDSGLVSKVHSMTDVTNGGIRGDALEISK 234
Query: 282 QGNLGITLDLDKVPTCEEGMTAYEMM-------LSESQERMLMILNPEKQHKAQEILNKW 334
+ + D +KV + +M+ L S + +++I E L +
Sbjct: 235 TAGVSLVFDEEKVRSLINP-KVLKMLEELGIDPLGVSLDSLMIIAPEEDAVDIIRTLREA 293
Query: 335 GLHFSIIGITTNDKLFRVIHRGE---------EVANLPIKALSDEAPEYD 375
G+ +G + ++ GE E A PIK + E D
Sbjct: 294 GVRADEVGRVEEGRGVPLVVTGEGRELKPAFRESAYTPIKKVVGEYSPGD 343
>gnl|CDD|100032 cd02196, PurM, PurM (Aminoimidazole Ribonucleotide [AIR]
synthetase), one of eleven enzymes required for purine
biosynthesis, catalyzes the conversion of
formylglycinamide ribonucleotide (FGAM) and ATP to AIR,
ADP, and Pi, the fifth step in de novo purine
biosynthesis. The N-terminal domain of PurM is related
to the ATP-binding domains of hydrogen
expression/formation protein HypE, the AIR synthases,
selenophosphate synthetase (SelD), and FGAM synthase and
is thought to bind ATP..
Length = 297
Score = 36.7 bits (86), Expect = 0.022
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532
VA C +I+ GA+PL D + G + E+ + VKGI E C+ ++ G
Sbjct: 50 VAMCVNDILCQGAEPLFFLDYIATGKLD-PEVAAEI---VKGIAEGCRQAGCALLGG--- 102
Query: 533 FYNETNGQSIFP---TPT---IAG--VGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581
ET + P +AG VG++ ++ GD+++ + + G H
Sbjct: 103 ---ET---AEMPGVYAEGEYDLAGFAVGVVEKDKIIDG-SKIKPGDVLIGLPSSGLH 152
Score = 28.2 bits (64), Expect = 8.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 315 MLMILNPEKQHKAQEILNKWGLHFSIIG 342
M++I++ E + EIL K G +IG
Sbjct: 267 MVLIVSEEDADEVLEILEKLGEKAYVIG 294
>gnl|CDD|100033 cd02197, HypE, HypE (Hydrogenase expression/formation protein).
HypE is involved in Ni-Fe hydrogenase biosynthesis.
HypE dehydrates its own carbamoyl moiety in an
ATP-dependent process to yield the enzyme thiocyanate.
The N-terminal domain of HypE is related to the
ATP-binding domains of the AIR synthases,
selenophosphate synthetase (SelD), and FGAM synthase and
is thought to bind ATP..
Length = 293
Score = 36.3 bits (85), Expect = 0.032
Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 37/190 (19%)
Query: 484 GAKPLAITDNL----NFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNG 539
GAKPL ++ F + E I VK + EA + IV+G+ +
Sbjct: 74 GAKPLYLSLGFILEEGFPLEDLERI-------VKSMAEAAREAGVKIVTGDTKVVPKGKA 126
Query: 540 QSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILM---IGNDGCHLDCSMYSLECASSNI 596
IF T G+G++P ++ + GD I++ IG+ G + + L
Sbjct: 127 DGIFINTT--GIGVIPR-GVIISPSNIRPGDKIIVSGTIGDHGAAILAAREGLG-----F 178
Query: 597 GPPPKVDC----HLEKNHGFFVLSMINAK-KITACHDISTGGLIITLAEMTISSAKGMDI 651
+ DC L V +++ A I A D + GGL L E+ +S G++I
Sbjct: 179 ETDIESDCAPLNGL-------VEALLEAGPGIHAMRDPTRGGLAAVLNEIARASGVGIEI 231
Query: 652 I---LPIEIE 658
+P+ E
Sbjct: 232 EEEAIPVREE 241
Score = 29.0 bits (66), Expect = 5.4
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 278 EMGNQGNLGITLDLDKVPTCEEGMTAYEMM----LSESQE-RMLMILNPEKQHKAQEILN 332
E+ +GI ++ + +P EE A EM+ L + E + + I+ PE + E L
Sbjct: 220 EIARASGVGIEIEEEAIPVREEVRGACEMLGLDPLYLANEGKFVAIVPPEDAEEVLEALR 279
Query: 333 K--WGLHFSIIG 342
G +IIG
Sbjct: 280 SHPLGKEAAIIG 291
>gnl|CDD|35458 KOG0237, KOG0237, KOG0237, Glycinamide ribonucleotide synthetase
(GARS)/Aminoimidazole ribonucleotide synthetase (AIRS)
[Nucleotide transport and metabolism].
Length = 788
Score = 34.1 bits (78), Expect = 0.13
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 21/117 (17%)
Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532
VA +II GA+PL D G + + Q VKGI E C+ +V G +
Sbjct: 519 VAMNVNDIIVQGAEPLFFLDYFATGKLDV-SVAEQV---VKGIAEGCRQAGCALVGGETA 574
Query: 533 ----FYNE----TNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581
Y G + VG + ++ +++ GD++L + + G H
Sbjct: 575 EMPGMYAPGEYDLAGFA---------VGAVERTDILPKLNEIVAGDVLLGLPSSGVH 622
>gnl|CDD|32221 COG2038, CobT, NaMN:DMB phosphoribosyltransferase [Coenzyme
metabolism].
Length = 347
Score = 31.0 bits (70), Expect = 1.1
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 14/98 (14%)
Query: 179 VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQ 238
V AAG A N + + +P + L + D G +M+ EE I
Sbjct: 88 VINRAAGGAAINVLAAGAGAKPKVPDIGLDGRPTGDIAEGPAMSEEEAEAAIEA------ 141
Query: 239 VGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSA 276
GK L N D ++ I + G T +A
Sbjct: 142 ------GKEL--GKELAKNGDDLLIIGESGPGNTTTAA 171
>gnl|CDD|35479 KOG0258, KOG0258, KOG0258, Alanine aminotransferase [Amino acid
transport and metabolism].
Length = 475
Score = 30.6 bits (69), Expect = 1.5
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 139 KTKHLLSGVVAGIAGYSNSFGVPTVGGEV-EFL------PCYNNNIIVNTFAAGIAKT-- 189
+ K +L+ + YS+S GVP V V EF+ P +I + T A+ ++
Sbjct: 94 RAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSIL 153
Query: 190 NAIFSSKARGIGLPL 204
+ + + K G+ +P+
Sbjct: 154 SLLIAGKKTGVLIPI 168
>gnl|CDD|33337 COG3535, COG3535, Uncharacterized conserved protein [Function
unknown].
Length = 357
Score = 30.6 bits (69), Expect = 1.7
Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 240 GDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE 299
GDP+ GK + ++ V+ + ++ + MG + ++K+P +E
Sbjct: 26 GDPYIGKLMALRAMKEGGPIKVLDVDEIAEDDFVATVGMMGAP-----IVGIEKLPNGDE 80
Query: 300 GMTAYEMM 307
+ A+E++
Sbjct: 81 AIRAFEVL 88
>gnl|CDD|37985 KOG2774, KOG2774, KOG2774, NAD dependent epimerase [General
function prediction only].
Length = 366
Score = 30.0 bits (67), Expect = 2.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 395 DEDCTKSLLKLLSSPNLSSRRWVY 418
D DC S+++LL++ + S +R Y
Sbjct: 256 DTDCMASVIQLLAADSQSLKRRTY 279
>gnl|CDD|31053 COG0709, SelD, Selenophosphate synthase [Amino acid transport and
metabolism].
Length = 346
Score = 29.5 bits (66), Expect = 3.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 72 GENAGVVDIGGGDCVV----FKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAM 127
G++A V D+G G ++ F M P +P+ + D+F MG +P+ A+
Sbjct: 49 GDDAAVYDLGNGHSIISTTDFFM-----PIVDDPFDFGRIAATNAISDVFAMGGKPIMAI 103
Query: 128 NSLRF 132
L F
Sbjct: 104 AILGF 108
>gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease,
Peptidase S8 family domain in Thiazoline
oxidase/subtilisin-like proteases. Thiazoline
oxidase/subtilisin-like protease is produced by the
symbiotic bacteria Prochloron spp. that inhabit didemnid
family ascidians. The cyclic peptides of the
patellamide class found in didemnid extracts are now
known to be synthesized by the Prochloron spp. The
prepatellamide is heterocyclized to form thiazole and
oxazoline rings and the peptide is cleaved to form the
two cyclic patellamides A and C. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Length = 267
Score = 29.6 bits (67), Expect = 3.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 504 IMGQFVHSVKGIREACQILDFPIVSGNVSFYNETN 538
I GQ SV+GI C+ L+ PI + + ++ +
Sbjct: 60 IFGQPCSSVEGIAPLCRGLNIPIFAEDRRGCSQLD 94
>gnl|CDD|145564 pfam02491, FtsA, Cell division protein FtsA. FtsA is essential for
bacterial cell division, and co-localizes to the septal
ring with FtsZ. It has been suggested that the
interaction of FtsA-FtsZ has arisen through coevolution
in different bacterial strains. The FtsA protein
contains two structurally related actin-like ATPase
domains which are also structurally related to the
ATPase domains of HSP70 (see PF00012).
Length = 163
Score = 29.1 bits (66), Expect = 4.7
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 12/44 (27%)
Query: 77 VVDIGGG--DCVVFKMESHNHPSYIEPYQGAATGVGG--ILRDI 116
++DIG G D + K S + S I GVGG I DI
Sbjct: 3 LIDIGSGKTDIAIAKDGSLGYISVI--------GVGGGHITDDI 38
>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain
of the beta subunits of the E1 components of human
pyruvate dehydrogenase complex (E1- PDHc) and related
proteins. Thiamine pyrophosphate (TPP) family,
pyrimidine (PYR) binding domain of the beta subunits of
the E1 components of: human pyruvate dehydrogenase
complex (E1- PDHc), the acetoin dehydrogenase complex
(ADC), and the branched chain alpha-keto acid
dehydrogenase/2-oxoisovalerate dehydrogenase complex
(BCADC), subfamily. The PYR domain is found in many key
metabolic enzymes which use TPP (also known as thiamine
diphosphate) as a cofactor. TPP binds in the cleft
formed by a PYR domain and a PP domain. The PYR domain,
binds the aminopyrimidine ring of TPP, the PP domain
binds the diphosphate residue. A polar interaction
between the conserved glutamate of the PYR domain and
the N1' of the TPP aminopyrimidine ring is shared by
most TPP-dependent enzymes, and participates in the
activation of TPP. The PYR and PP domains have a common
fold, but do not share strong sequence conservation. The
PP domain is not included in this sub-family. E1-PDHc is
an alpha2beta2 dimer-of-heterodimers having two active
sites lying between PYR and PP domains of separate
subunits, the PYR domains are arranged on the beta
subunit, the PP domains on the alpha subunits. PDHc
catalyzes the irreversible oxidative decarboxylation of
pyruvate to produce acetyl-CoA in the bridging step
between glycolysis and the citric acid cycle. ADC
participates in the breakdown of acetoin. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate during the breakdown of branched
chain amino acids.
Length = 167
Score = 29.0 bits (66), Expect = 5.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 656 EIEKDPKPFLFGEDQGRY 673
E+E+DP+ + GED G Y
Sbjct: 10 EMERDPRVVVLGEDVGDY 27
>gnl|CDD|145819 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel
domain.
Length = 516
Score = 28.7 bits (65), Expect = 5.7
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 10/49 (20%)
Query: 97 SYIEPYQGAATGVGGILRDIFTM-------GARPVAAMNSLRFGAIHHP 138
S I G ++GV L+ G R A L + HP
Sbjct: 45 SPIRGTGGVSSGVVPFLKVFDDTARYVNQGGKRRGAVAVYLE---VWHP 90
>gnl|CDD|119321 cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of
Escherichia coli AraH and related proteins. E. coli AraH
is the TM of a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of the monosaccharide arabinose.
This group also contains E. coli RbsC, AlsC, and MglC,
which are TMs of other monosaccharide transporters, the
ribose transporter, the D-allose transporter and the
galactose transporter, respectively. The D-allose
transporter may also be involved in low affinity ribose
transport. These transporters generally bind type 1
PBPs. PBP-dependent ABC transporters consist of a PBP,
two TMs, and two cytoplasmic ABCs, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP, which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. Proteins in this subgroup have a single TM
which homodimerizes to generate the transmembrane pore..
Length = 263
Score = 28.5 bits (65), Expect = 6.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 114 RDIFTMGARPVAAMNSLRFGAIHHPKTK---HLLSGVVAGIAG-----YSNSFGVPTVGG 165
R ++ +G P AA R I+ + K ++LSG++AG+AG S PT G
Sbjct: 143 RYLYAVGGNPEAA----RLSGINVRRVKILAYVLSGLLAGLAGILLAARLGS-AQPTAGN 197
Query: 166 EVEF 169
E
Sbjct: 198 GYEL 201
>gnl|CDD|58169 cd03522, MoeA_like, MoeA_like. This domain is similar to a domain
found in a variety of proteins involved in biosynthesis
of molybdopterin cofactor, like MoaB, MogA, and MoeA.
There this domain is presumed to bind molybdopterin. The
exact function of this subgroup is unknown..
Length = 312
Score = 28.6 bits (64), Expect = 7.4
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 209 AKTGRDGIGGASMASEEFGENIAKKR-------PTVQVGDPFTGKCLLEA---CLELMNT 258
G++ + A + + E+ A R +++ +P G+ L A L ++
Sbjct: 36 LAAGKEHVYVARLEPGDVHEDEAAARLAAALAGDGLRLSEPAEGRVNLFAERAGLLKVDV 95
Query: 259 DAVIAIQDMGA 269
+A+ A+ + A
Sbjct: 96 EALDALNAIDA 106
>gnl|CDD|63857 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in the
p85 isoforms of the regulatory subunit of the class IA
PI3K (phosphatidylinositol 3'-kinase). This domain is
also called Bcr (breakpoint cluster region protein)
homology (BH) domain. Class IA PI3Ks are heterodimers,
containing a regulatory subunit (p85) and a catalytic
subunit (p110) and are activated by growth factor
receptor tyrosine kinases (RTKs); this activation is
mediated by the p85 subunit. p85 isoforms, alpha and
beta, contain a C-terminal p110-binding domain flanked
by two SH2 domains, an N-terminal SH3 domain, and a
RhoGAP domain flanked by two proline-rich regions. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude..
Length = 200
Score = 28.4 bits (63), Expect = 7.6
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 364 IKALSDEAPEYDRAWCEPITIPP------SNPQLLCSDEDCTKSLLKLLSSPNLSSRRWV 417
+ AL+D Y P+ P S Q + S ++ + L KL+ SPNL + W+
Sbjct: 66 VAALADALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWL 125
Query: 418 YEQY 421
QY
Sbjct: 126 TLQY 129
>gnl|CDD|29149 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in DNA
topology by catalysing the concerted breakage and
rejoining of DNA strands during normal cellular growth..
Length = 445
Score = 28.2 bits (63), Expect = 8.3
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 365 KALSDEAPEYDRAWCEPITIPPSNPQLLC 393
D P YD EP +PP P LL
Sbjct: 111 DPTVDFVPNYDGQEVEPEVLPPIFPNLLV 139
>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit;
Validated.
Length = 327
Score = 28.2 bits (63), Expect = 8.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 656 EIEKDPKPFLFGEDQGRY 673
E+ +DP+ F+ GED G Y
Sbjct: 17 EMARDPRVFVIGEDVGHY 34
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 9,023,065
Number of extensions: 489466
Number of successful extensions: 1210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1145
Number of HSP's successfully gapped: 69
Length of query: 737
Length of database: 6,263,737
Length adjustment: 101
Effective length of query: 636
Effective length of database: 4,081,228
Effective search space: 2595661008
Effective search space used: 2595661008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.6 bits)