RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780970|ref|YP_003065383.1|
phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter
asiaticus str. psy62]
(737 letters)
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
genomics, JCSG, PSI, protein structure initiative; 2.15A
{Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1
d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A*
2hry_A*
Length = 615
Score = 437 bits (1125), Expect = e-123
Identities = 206/664 (31%), Positives = 311/664 (46%), Gaps = 69/664 (10%)
Query: 19 DECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTTGKHVIQGPGENAGVV 78
+ + L R+PT E+ S MW+EHC Y +KK++R LP TG NAGVV
Sbjct: 16 RYLNILKEKLGREPTFVELQAFSVMWSEHCGYSHTKKYIRRLPKTG------FEGNAGVV 69
Query: 79 DIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHP 138
++ V FK+ESHNHPS IEPY GAATGVGGI+RD+ MGARP A +SL
Sbjct: 70 NLDDYYSVAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGARPTAIFDSLHMS----- 124
Query: 139 KTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKAR 198
++ G++ GIA Y NS GVPTVGGE+ Y +N +VN AAG+ + + + SKA
Sbjct: 125 ---RIIDGIIEGIADYGNSIGVPTVGGELRISSLYAHNPLVNVLAAGVVRNDMLVDSKAS 181
Query: 199 GIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNT 258
G +V G TGRDGI GAS ASE+ + A K +QVGDPF K L+EA LE++
Sbjct: 182 RPGQVIVIFGGATGRDGIHGASFASEDLTGDKATKLS-IQVGDPFAEKMLIEAFLEMVEE 240
Query: 259 DAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMI 318
V QD+GA G+ + E+ +GNLG + LD+VP E M +E+++SESQERM ++
Sbjct: 241 GLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRVPLREPDMEPWEILISESQERMAVV 300
Query: 319 LNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAPEYDRAW 378
+P+K + EI K L ++ + ++RV++R + V +P++ L++ APE D
Sbjct: 301 TSPQKASRILEIARKHLLFGDVVAEVIEEPVYRVMYRNDLVMEVPVQLLAN-APEEDIVE 359
Query: 379 CEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAG 438
P IP R V+EQYD M+ ++ + G
Sbjct: 360 YTPGKIPEFKRVEFEEVN-----------------AREVFEQYDHMVGTD--TVVPPGFG 400
Query: 439 VIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGN 498
+ + + D + GT AV E R ++ GA+PLAIT+ +N+G+
Sbjct: 401 AAVMRIKRDGGYSLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGAEPLAITNCVNYGD 460
Query: 499 PEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYS 558
P+ + + + ++ AC+ P+ SGN S YN G+ I PT + +G +
Sbjct: 461 PDVDPV--GLSAMMTALKNACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQK 518
Query: 559 LMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMI 618
+ + + +G + L+ EK + +
Sbjct: 519 VAKP-----KPSKVFAVGWNDFELE----------------------REKELWRAIRKLS 551
Query: 619 NAKKITACHDISTGGLIITLAEMTISSAK-GMDIILPIEIEKDPKPFLFGEDQGRYVVCI 677
+S+ L+ T +++ LP +F E V +
Sbjct: 552 EE----GAFILSSSQLLTRTHVETFREYGLKIEVKLPEVRPAHQMVLVFSERTPVVDVPV 607
Query: 678 SPEN 681
Sbjct: 608 KEIG 611
>1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM synthetase,
PURS, PURQ, formyl glycinamide, ligase; HET: CYG ADP;
1.90A {Salmonella typhimurium} SCOP: a.5.10.1 c.23.16.1
d.284.1.2 d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1
Length = 1303
Score = 430 bits (1107), Expect = e-121
Identities = 159/777 (20%), Positives = 286/777 (36%), Gaps = 104/777 (13%)
Query: 15 GLTKDECDQIIHI---LKRQPTLTEIGIISAMWNEHCSYKSS----------------KK 55
L +DE D + L R P E+ + + +EHC +K K
Sbjct: 189 ALAEDEIDYLQEAFTKLGRNPNDIELYMFAQANSEHCRHKIFNADWIIDGKPQPKSLFKM 248
Query: 56 WLRTLPTTGKHVIQGPGENAGVVDIGGGD------------------CVVFKMESHNHPS 97
T TT +V+ +NA V++ ++ K+E+HNHP+
Sbjct: 249 IKNTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPT 308
Query: 98 YIEPYQGAATGVGGILRD--IFTMGARPVAAMNSLRFGAIHHPKTK-------------- 141
I P+ GAATG GG +RD GA+P A + + P +
Sbjct: 309 AISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIV 368
Query: 142 ---HLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNN-----------IIVNTFAAGIA 187
+++ G A ++N FG P + G N+ I+ G
Sbjct: 369 TALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNI 428
Query: 188 KTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGEN-IAKKRPTVQVGDPFTGK 246
+ + + +G L+ LG G+GG + +S G++ +VQ +P +
Sbjct: 429 RADHVQK-GEIVVGAKLIVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMER 487
Query: 247 CLLEAC---LELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTA 303
E +L + + ++ I D+GA GL+ + E+ + G G +L + + E GM+
Sbjct: 488 RCQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSP 547
Query: 304 YEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVI--HRGEEVAN 361
E+ +ESQER ++ + ++ E+ + +++IG T ++ + H + +
Sbjct: 548 LEIWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGDATEEQHLSLHDNHFDNQPID 607
Query: 362 LPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQY 421
LP+ L + P+ R L +D ++ ++L P ++ + ++
Sbjct: 608 LPLDVLLGKTPKMTRDVQTL---KAKGDALNRADITIADAVKRVLHLPTVAEKTFLVTIG 664
Query: 422 DTMIQSNS--------IQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAV 473
D + Q+P D V A S D + AV
Sbjct: 665 DRTVTGMVARDQMVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPVALLDFAASARLAV 724
Query: 474 AECWRNIIATGAK-----PLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVS 528
E NI AT L+ G+P ++ + V +V E C L I
Sbjct: 725 GEALTNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYDAVKAVGE--ELCPQLGLTIPV 782
Query: 529 GNVSFY--------NETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIG--ND 578
G S NE + + I+ + D + E + +L+I
Sbjct: 783 GKDSMSMKTRWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTEDNALLLIDLGKG 842
Query: 579 GCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITL 638
L + + P D K + +++ A+K+ A HD S GGL++TL
Sbjct: 843 HNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAMQALVAARKLLAWHDRSDGGLLVTL 902
Query: 639 AEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIP 695
AEM + G+ + + + D LF E+ G + + E++D V + +
Sbjct: 903 AEMAFAGHCGVQVDIA-ALGDDHLAALFNEELGGV-IQVRAEDRDAVEALLAQYGLA 957
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD,
ATP-binding, nucleotide-binding, selenium, transferase;
HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Length = 394
Score = 117 bits (292), Expect = 1e-26
Identities = 46/326 (14%), Positives = 94/326 (28%), Gaps = 25/326 (7%)
Query: 70 GPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNS 129
G G + V+ + G + + + +P +PY +L D++ MG M
Sbjct: 67 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLM 126
Query: 130 --LRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIA 187
+ + ++ ++ G + G GG+ P + T
Sbjct: 127 LLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTV---CQ 183
Query: 188 KTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPF---- 243
I A + ++ T + E I V +
Sbjct: 184 PNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAM 243
Query: 244 -TGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMT 302
L LM+T A D+ G+ A + Q ++ + +P +
Sbjct: 244 MNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAA 303
Query: 303 AYEMMLSESQER----------MLMILNPEKQHKAQEILNK----WGLHFSIIG-ITTND 347
+ + +L+ L E+ + + G IIG + +
Sbjct: 304 VSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGN 363
Query: 348 KLFRVIHRGEEVANLPIKALSDEAPE 373
+ R+I + + P A + P
Sbjct: 364 RTARIIDKPRIIEVAPQVATQNVNPT 389
Score = 80.8 bits (198), Expect = 1e-15
Identities = 40/314 (12%), Positives = 90/314 (28%), Gaps = 25/314 (7%)
Query: 402 LLKLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYV 461
L KLL S + + + ++ I G D VI + H +L ++D V
Sbjct: 40 LQKLLESLQENHFQEDEQFLGAVMPRLGI---GMDTCVIPL-RHGGLSLVQTTDYIYPIV 95
Query: 462 KADPFEGTKQAVAECWRNIIATGAKPL--AITDNLNFGNPEKEEIMGQFVHSVKGIREAC 519
DP+ + A A ++ A G + E ++G ++A
Sbjct: 96 -DDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAA 154
Query: 520 QILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHE----GDLILMI 575
+ + G + T I+PD ++ + + + +
Sbjct: 155 EEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVH 214
Query: 576 GNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLI 635
+ L ++ + +++ A DI+ G++
Sbjct: 215 QWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGIL 274
Query: 636 ITLAEMTISSAKGMDII---LPI--------EIEKDPKPFLFGED---QGRYVVCISPEN 681
+ + + LP+ + + + G G ++C+ E
Sbjct: 275 GHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQ 334
Query: 682 QDLVMSEANNKNIP 695
+E +
Sbjct: 335 AARFCAEIKSPKYG 348
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
vulgaris subsp} PDB: 2z1t_A*
Length = 343
Score = 111 bits (278), Expect = 6e-25
Identities = 55/309 (17%), Positives = 106/309 (34%), Gaps = 24/309 (7%)
Query: 65 KHVIQGPGENAGVVDIGGGDCVVFKMESHN-HPSYIEPYQGAATGVGGILRDIFTMGARP 123
+ I G +A +D+ G + +S+ P + V G + D+ +GARP
Sbjct: 32 DNPILGTLNDAARLDLTGP--LAMSTDSYTVDPIFFPGGDIGTLAVHGTVNDVSMLGARP 89
Query: 124 VAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYN-NNIIVNTF 182
+ +L VVA + + GV V G+ + +P + + +NT
Sbjct: 90 RYLSCGF---ILEEGLDMDILERVVASMGKAAREAGVFIVTGDTKVVPRGACDKMFINTT 146
Query: 183 AAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDP 242
G + S G ++ +G G G ++ S+ G N A +
Sbjct: 147 GIGEILVDPAPSGDRARPGDAILI----SGSMGDHGLTILSQRQGLNFAADVCSDSASLN 202
Query: 243 FTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMT 302
+ L+ + ++D GL + E+ Q + VP E
Sbjct: 203 RVVEKLVLEV------GDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVRN 256
Query: 303 AYEMMLSE-----SQERMLMILNPEKQHKAQEILNKW--GLHFSIIGITTNDKLFRVIHR 355
+ + ++ +++ IL E+ A +L + G H + IG +
Sbjct: 257 GCSFLGLDPLYLANEGKLICILPEERAEAALAVLREGPHGEHAARIGSVKSVGELGAARA 316
Query: 356 GEEVANLPI 364
G+ V +
Sbjct: 317 GQVVMETAL 325
Score = 89.9 bits (222), Expect = 2e-18
Identities = 49/290 (16%), Positives = 91/290 (31%), Gaps = 30/290 (10%)
Query: 427 SNSIQLPGGDAGVIRVEGHETKALAFSSD---VTPRYVKADPFEGTKQAVAECWRNIIAT 483
N I DA + + G LA S+D V P + + AV ++
Sbjct: 32 DNPILGTLNDAARLDLTGP----LAMSTDSYTVDPIF--FPGGDIGTLAVHGTVNDVSML 85
Query: 484 GAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIF 543
GA+P ++ +I+ + V + +A + IV+G+ +F
Sbjct: 86 GARPRYLSCGFILEEGLDMDILERV---VASMGKAAREAGVFIVTGDTKVVPRGACDKMF 142
Query: 544 PTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVD 603
T G D A GD IL+ G+ G H ++ + V
Sbjct: 143 INTTGIGEI---LVDPAPSGDRARPGDAILISGSMGDHG----LTILSQRQGLNFAADVC 195
Query: 604 CHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDI-----ILPIEIE 658
+ ++ I D + GGL TL E+ S + + +
Sbjct: 196 SDSASLNRVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVR 255
Query: 659 KDPKPF----LFGEDQGRYVVCISPENQDLVMS--EANNKNIPLRYLGKV 702
L+ ++G+ + + E + ++ +G V
Sbjct: 256 NGCSFLGLDPLYLANEGKLICILPEERAEAALAVLREGPHGEHAARIGSV 305
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus
flagellatus}
Length = 319
Score = 110 bits (275), Expect = 1e-24
Identities = 41/313 (13%), Positives = 103/313 (32%), Gaps = 15/313 (4%)
Query: 58 RTLPTTGKHVIQGPGENAGVVDIGGGDCVVFK----MESHNHPSYIEPYQGAATGVGGIL 113
R + G G++A ++ G + + + + I+P+ + +
Sbjct: 11 RYFRRAHPSAVLGVGDDAALIQPSPGMELAVSADMLVANTHFYPNIDPWLIGWKSLAVNI 70
Query: 114 RDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCY 173
D+ MGA+P A + + +S AG + F + +GG+
Sbjct: 71 SDMAAMGAQPRWATLT----IALPEADEDWISKFAAGFFACAAQFDIALIGGD-----TT 121
Query: 174 NNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKK 233
+ ++ G A ++ +++ G + A++ +
Sbjct: 122 RGPLTISVQIMGETPPGASL-LRSTARADDDIWVSGPLGDAALALAAIQGRYPLSDTELA 180
Query: 234 RPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDK 293
+ P L +A L ++ I+ + G ++G + L +
Sbjct: 181 ACGKALHQPQPRVVLGQALRGLAHSALDISDGLLADLGHILEHSQVGAEVWLKAIPKSEV 240
Query: 294 VPTCEEGMTAYEMMLSESQE-RMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRV 352
V + + +M+LS + + + + + + +I + L ++IG T+ + +
Sbjct: 241 VSAHSQEVAIQKMILSGGDDYELCFTASTQHRQQIADIGRQLSLDMAVIGRITDTQQLVI 300
Query: 353 IHRGEEVANLPIK 365
+ L
Sbjct: 301 HGLDDAPLTLKEH 313
Score = 85.3 bits (210), Expect = 5e-17
Identities = 55/315 (17%), Positives = 105/315 (33%), Gaps = 32/315 (10%)
Query: 419 EQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDV----TPRYVKADPFEGTKQAVA 474
++Y +++ G DA +I+ LA S+D+ T Y DP+ +++A
Sbjct: 10 QRYFRRAHPSAVLGVGDDAALIQPS--PGMELAVSADMLVANTHFYPNIDPWLIGWKSLA 67
Query: 475 ECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFY 534
++ A GA+P T + +++ I G D ++ G+ +
Sbjct: 68 VNISDMAAMGAQPRWATLTIALPEADEDWIS----KFAAGFFACAAQFDIALIGGDTTRG 123
Query: 535 NETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASS 594
T I +G P + + R +A D I + G G
Sbjct: 124 PLTISVQI--------MGETPPGASLLR-STARADDDIWVSGPLGDAALALAAIQGRYPL 174
Query: 595 NIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILP 654
+ L + VL + DIS GL+ L + S G ++ L
Sbjct: 175 SDTELAACGKALHQPQPRVVLGQALRGLAHSALDIS-DGLLADLGHILEHSQVGAEVWLK 233
Query: 655 -----------IEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV- 702
+ K L G D S +++ + ++ + +G++
Sbjct: 234 AIPKSEVVSAHSQEVAIQKMILSGGDDYELCFTASTQHRQQIADIGRQLSLDMAVIGRIT 293
Query: 703 SGSTLSIHNILNIPV 717
L IH + + P+
Sbjct: 294 DTQQLVIHGLDDAPL 308
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis KOD1} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 110 bits (274), Expect = 2e-24
Identities = 55/317 (17%), Positives = 109/317 (34%), Gaps = 21/317 (6%)
Query: 61 PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120
+ + ++ + G V P + V G + D+ MG
Sbjct: 30 LKSAGGIGLDALDDGATIPFGDKHIVFTIDGHTVKPLFFPGGDIGRLAVSGTVNDLAVMG 89
Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180
A P+A NS+ I +L V+ + + VP V G+ + + ++
Sbjct: 90 AEPIALANSM---IIGEGLDMEVLKRVLKSMDETAREVPVPIVTGDTKVVEDKIEMFVIT 146
Query: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240
+ +K V + G GI S E K
Sbjct: 147 AGIGIAEHPVSDAGAKVGDA----VLVSGTIGDHGIALMSHREGIAFETELKSDVAPI-- 200
Query: 241 DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG 300
+++A E + + + A++D AGL+ + E+ + N+GI + +P E
Sbjct: 201 -----WDVVKAVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEV 255
Query: 301 MTAYEMML-----SESQERMLMILNPEKQHKAQEILNKW--GLHFSIIGITTNDKLFRVI 353
A EM+ ++ +++M++ E +A E + K G + +IIG D +V+
Sbjct: 256 RAASEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVL 315
Query: 354 HRGEEVANLPIKALSDE 370
++ +
Sbjct: 316 LETGIGGKRFMEPPEGD 332
Score = 78.9 bits (193), Expect = 4e-15
Identities = 52/301 (17%), Positives = 100/301 (33%), Gaps = 27/301 (8%)
Query: 414 RRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSD-VTPRYVKADPFEGTKQA 472
R + + D I K + F+ D T + + + + A
Sbjct: 21 RDVILKTLTLKSAGGIGLDALDDGATIPFGD---KHIVFTIDGHTVKPLFFPGGDIGRLA 77
Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532
V+ ++ GA+P+A+ +++ G E++ + + K + E + + PIV+G+
Sbjct: 78 VSGTVNDLAVMGAEPIALANSMIIGEGLDMEVLKRVL---KSMDETAREVPVPIVTGDTK 134
Query: 533 FYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECA 592
+ +F G+ P A GD +L+ G G H M E
Sbjct: 135 VVE--DKIEMFVITAGIGIAEHPVSD-----AGAKVGDAVLVSGTIGDHGIALMSHREGI 187
Query: 593 SSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDII 652
+ V + V I + I A D + GL L E+ S G+ +
Sbjct: 188 AFETELKSDVAPIWDVVK--AVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVR 245
Query: 653 LP---------IEIEKDPKPFLFGEDQGRYVVCISPENQDLVMS--EANNKNIPLRYLGK 701
E ++G+ V+ ++ E + + K +G+
Sbjct: 246 EADIPIRPEVRAASEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGE 305
Query: 702 V 702
V
Sbjct: 306 V 306
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
crystallography, structural genomics, BSGI; 2.00A
{Escherichia coli O157} PDB: 2i6r_A
Length = 334
Score = 101 bits (251), Expect = 8e-22
Identities = 49/315 (15%), Positives = 102/315 (32%), Gaps = 29/315 (9%)
Query: 65 KHVIQGPGENAGVVDIG----GGDCVVFKMESHN-HPSYIEPYQGAATGVGGILRDIFTM 119
+ E+ +D+ GD + F +S+ P + + G D+
Sbjct: 26 ANPWLAEQEDQARLDLAQLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVS 85
Query: 120 GARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYN-NNII 178
GA P + L VV +A + + G+ V G+ + + + +
Sbjct: 86 GAIPRYLSCGF---ILEEGLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAADKLF 142
Query: 179 VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQ 238
+NT G TN + ++ G L+ +G G GA++ + + + +
Sbjct: 143 INTAGMGAIPTNIHWGAQTLTAGDILLV----SGTLGDHGATILNLREQLGLDGELVSDC 198
Query: 239 VGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE 298
L L + V A++D G+ E GI + +P
Sbjct: 199 -------AVLTPLIQTLRDIPGVKALRDATRGGVNAVVHEFAAACGCGIEISESALPVKP 251
Query: 299 EGMTAYE-----MMLSESQERMLMILNPEKQHKAQEIL--NKWGLHFSIIGITTNDKLFR 351
E + ++ ++++ + + L + G ++IG K R
Sbjct: 252 AVRGVCELLGLDALNFANEGKLVIAVERNAAEQVLAALHSHPLGKDAALIGEVVERKGVR 311
Query: 352 VIHR--GEEVANLPI 364
+ + +LP
Sbjct: 312 LAGLYGVKRTLDLPH 326
>1cli_A Protein (phosphoribosyl-aminoimidazole synthetase); AIR synthetase,
PURM, purine biosynthesis, trifunctional enzyme, PURL;
2.50A {Escherichia coli} SCOP: d.79.4.1 d.139.1.1
Length = 345
Score = 96.4 bits (239), Expect = 2e-20
Identities = 59/319 (18%), Positives = 98/319 (30%), Gaps = 35/319 (10%)
Query: 62 TTGKHVIQGPGENAGVVDIGGG----------DCVVFKMESHNHPSYIEPYQGAATGVGG 111
T V+ G G + + D V K+ + V
Sbjct: 33 TRRPEVMGGLGGFGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGI--DLVAM 90
Query: 112 ILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLP 171
+ D+ GA P+ ++ S V++GIA G VGGE +P
Sbjct: 91 CVNDLVVQGAEPLFFLDY----YATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMP 146
Query: 172 --CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGEN 229
+ + V F G+ + + I G L+ LG+ G S+ + +
Sbjct: 147 GMYHGEDYDVAGFCVGVVEKSEIIDGSKVSDGDVLIALGSSGPHS--NGYSLVRKILEVS 204
Query: 230 IAKKRPTVQVGDPFTGKCLLEACL------ELMNTDAVIAIQDMGAAGLTCSAIEMGNQG 283
+ T G P L + EL+ V AI + G + +
Sbjct: 205 GCDPQTTELDGKPLADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDN 264
Query: 284 NLGIT-LDLDKVPT-----CEEGMTAYEMMLSESQE--RMLMILNPEKQHKAQEILNKWG 335
+ + P G + M M++ L + KA +LN G
Sbjct: 265 TQAVIDESSWQWPEVFNWLQTAGNVEHHEMYRTFNCGVGMIIALPAPEVDKALALLNANG 324
Query: 336 LHFSIIG-ITTNDKLFRVI 353
+ IG I +D RV+
Sbjct: 325 ENAWKIGIIKASDSEQRVV 343
Score = 43.6 bits (102), Expect = 2e-04
Identities = 41/306 (13%), Positives = 92/306 (30%), Gaps = 38/306 (12%)
Query: 427 SNSIQLPGGDAGVIRV-EGHETKALAFSSD-----VTPRYVKADPFEGTKQAVAECWRNI 480
+ GG + + + + L +D + VA C ++
Sbjct: 36 PEVMGGLGGFGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDL 95
Query: 481 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ 540
+ GA+PL D G + + + GI E C +V G +
Sbjct: 96 VVQGAEPLFFLDYYATGKLDVD----TASAVISGIAEGCLQSGCSLVGGETAEMPGMYHG 151
Query: 541 SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP 600
+ VG++ ++ +GD+++ +G+ G H + YSL +
Sbjct: 152 EDY-DVAGFCVGVVEKSEIIDG-SKVSDGDVLIALGSSGPH--SNGYSLVRKILEVSGCD 207
Query: 601 KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMT-ISSAKGMDIILPIEI-- 657
L+ L + + ++ + +A +T + + +LP
Sbjct: 208 PQTTELDGKPLADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQA 267
Query: 658 ------EKDPKPFLFGEDQG---------------RYVVCISPENQDLVMSEANNKNIPL 696
+ P+ F + + G ++ + D ++ N
Sbjct: 268 VIDESSWQWPEVFNWLQTAGNVEHHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENA 327
Query: 697 RYLGKV 702
+G +
Sbjct: 328 WKIGII 333
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase,
structural genomics, NPPSFA; 1.98A {Aquifex aeolicus}
PDB: 2yye_A* 2zod_A 2zau_A
Length = 345
Score = 94.3 bits (233), Expect = 8e-20
Identities = 58/353 (16%), Positives = 106/353 (30%), Gaps = 52/353 (14%)
Query: 36 EIGIISAMWNEHCSYKSSKKWLRTL-----PTTGKHVIQGPGENAGVVDIGGGDCVVFKM 90
+ ++ + + C+ K L+ + T + + G++AGV + G V
Sbjct: 10 MVELLKLVRSSGCAAKVGPGDLQEILKGFNIYTDESTLVSIGDDAGVYEHNGIIWVY--T 67
Query: 91 ESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAG 150
P +PY A L D++ MG PV A+ F + + V+ G
Sbjct: 68 VDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNALAISCF--NNCELDIEIFREVIRG 125
Query: 151 IAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAK 210
+GG + AGI + +G L+
Sbjct: 126 ALDKLREAKTVLLGGHT----IDDKEPKFGLSVAGICPEGKYITQSGAQVGQLLILTKPI 181
Query: 211 TGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAA 270
I G + + + + D L A D+
Sbjct: 182 GTGILIKGLKEGILKEEDINEAIENMLALNDKARNLMLSLDA---------TACTDVTGF 232
Query: 271 GLTCSAIEMGNQGNLGITLDLDKVPTCE----------------EGMTAYEMMLSESQER 314
GL A + N+G + +KVP + E + + L + +
Sbjct: 233 GLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFVKNYLKSNLDN 292
Query: 315 --------------MLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVI 353
+L +N EK K E + +++ IIG T + + V+
Sbjct: 293 WKLILLSDPVTSGGLLFTINKEKLEKIDETAKELEVNYWIIGETIAENVLEVL 345
Score = 73.1 bits (178), Expect = 2e-13
Identities = 46/309 (14%), Positives = 88/309 (28%), Gaps = 51/309 (16%)
Query: 428 NSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKP 487
+++ G DAGV G ++ D+ V DP+ + A ++ A G P
Sbjct: 45 STLVSIGDDAGVYEHNG---IIWVYTVDIITPVV-NDPYLWGAISTANALSDVYAMGGIP 100
Query: 488 LAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPT 547
+ F E + F ++G + + ++ G+ E P
Sbjct: 101 VNALAISCF--NNCELDIEIFREVIRGALDKLREAKTVLLGGHTIDDKE-------PKFG 151
Query: 548 IAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLE 607
++ GI P+ +T+ + LIL L + +I + L
Sbjct: 152 LSVAGICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKEGILKEEDINEAIENMLALN 211
Query: 608 KNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKP---- 663
+LS+ C D++ GL+ + +S G I
Sbjct: 212 DKARNLMLSLDATA----CTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVK 267
Query: 664 ------------------FLFGEDQ------------GRYVVCISPENQDLVMSEANNKN 693
D G + I+ E + + A
Sbjct: 268 KKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETAKELE 327
Query: 694 IPLRYLGKV 702
+ +G+
Sbjct: 328 VNYWIIGET 336
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae}
PDB: 1cli_A
Length = 349
Score = 89.0 bits (220), Expect = 4e-18
Identities = 43/303 (14%), Positives = 91/303 (30%), Gaps = 27/303 (8%)
Query: 62 TTGKHVIQGPGENAGVVDIGGG----------DCVVFKMESHNHPSYIEPYQGAATGVGG 111
T V+ G G + ++ D V K+ + V
Sbjct: 37 TRRPEVMGGLGGFGALCELPTKYKHPVLVSGTDGVGTKLRLALDMKKHDTI--GIDLVAM 94
Query: 112 ILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLP 171
+ D+ GA P+ ++ G + ++SG+ G +
Sbjct: 95 CVNDLIVQGAEPLFFLDYYATGKLDVDTAAEVISGIADGCLQAGCALIGGETAEMPGM-- 152
Query: 172 CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRD-GIGGASMASEEFGENI 230
+ V F G+ + I +G L+ +G+ G E +
Sbjct: 153 YEGEDYDVAGFCVGVVEKEEIIDGSKVQVGDALIAVGSSGPHSNGYSLVRKILEVSKADK 212
Query: 231 AKKRPTVQVGDPFTG--KCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGIT 288
++ +G+ K +++ L+L+ + AI + G + + +G
Sbjct: 213 NERLAGKTIGEHLLAPTKIYIKSGLKLIAEHDIHAISHITGGGFWENIPRVLPEG-TKAV 271
Query: 289 LDLDKVPTC-------EEGMTAYEMMLSE--SQERMLMILNPEKQHKAQEILNKWGLHFS 339
+D E+G M +++ L ++ + A +L G
Sbjct: 272 IDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAAVALLQAEGETAW 331
Query: 340 IIG 342
+IG
Sbjct: 332 VIG 334
Score = 51.3 bits (122), Expect = 8e-07
Identities = 41/317 (12%), Positives = 97/317 (30%), Gaps = 59/317 (18%)
Query: 427 SNSIQLPGGDAGVIRV-EGHETKALAFSSDVTPRYVKADPFEGTKQAVAE---------- 475
+ GG + + ++ L +D GTK +A
Sbjct: 40 PEVMGGLGGFGALCELPTKYKHPVLVSGTDGV----------GTKLRLALDMKKHDTIGI 89
Query: 476 -----CWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGN 530
C ++I GA+PL D G + + + GI + C ++ G
Sbjct: 90 DLVAMCVNDLIVQGAEPLFFLDYYATGKLDVDTA----AEVISGIADGCLQAGCALIGGE 145
Query: 531 VSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLE 590
+ + VG++ ++ GD ++ +G+ G H + +
Sbjct: 146 TAEMPGMYEGEDYDV-AGFCVGVVEKEEIIDG-SKVQVGDALIAVGSSGPHSNGYSLVRK 203
Query: 591 CASSNIGPPPK-------VDCHLE--KNHGFFVLSMINAKKITACHDISTGGLIITLAEM 641
+ + + L K + L +I I A I+ GG +
Sbjct: 204 ILEVSKADKNERLAGKTIGEHLLAPTKIYIKSGLKLIAEHDIHAISHITGGGF---WENI 260
Query: 642 TISSAKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVM 686
+G ++ + + P F + +++G ++ + + + +
Sbjct: 261 PRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAAV 320
Query: 687 SEANNKNIPLRYLGKVS 703
+ + +G+++
Sbjct: 321 ALLQAEGETAWVIGEIA 337
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo
purine biosynthesis, AIR synthase family, spine, FGAR
amidotransferase; 2.31A {Bacillus anthracis}
Length = 346
Score = 79.9 bits (196), Expect = 2e-15
Identities = 54/324 (16%), Positives = 96/324 (29%), Gaps = 37/324 (11%)
Query: 62 TTGKHVIQGPGENAGVVDIGGG-----------DCVVFKMESHNHPSYIEPYQGAATGVG 110
T K V+ G G G+ D+ D V K+ + A +
Sbjct: 29 TMRKEVLGGLGGFGGMFDLSKFALEEPVLVSGTDGVGTKLMLAFMADKHDTIGIDAVAM- 87
Query: 111 GILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFL 170
+ DI GA P+ ++ + G K ++++ G+ G G +GGE +
Sbjct: 88 -CVNDIVVQGAEPLFFLDYIACGKAEPSKIENIVKGISEGC----RQAGCALIGGETAEM 142
Query: 171 P--CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGE 228
P + F GI I + + G L+ L +
Sbjct: 143 PGMYSTEEYDLAGFTVGIVDKKKIVTGEKIEAGHVLIGLASSGIHSNGYSLVRKVLLEDG 202
Query: 229 NIAKKRPTVQVGDPFTGKCLLEACLE------LMNTDAVIAIQDMGAAGLTCSAIEMGNQ 282
++ R ++ P + L + L+ V + + G I
Sbjct: 203 ELSLDRIYGRLELPLGEELLKPTKIYVKPILELLKNHEVYGMAHITGGGFIE-NIPRMLP 261
Query: 283 GNLGITLDLDKVPTCEEGMTAYEMMLSESQE---------RMLMILNPEKQHKAQEILNK 333
+G ++L E+ E +E M++ + E +L +
Sbjct: 262 EGIGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIFNMGIGMVVAVKEEDAKDIVRLLEE 321
Query: 334 WGLHFSIIGITTNDKLFRVIHRGE 357
G IIG T V G
Sbjct: 322 QGETARIIGRTVQGA--GVTFNGG 343
Score = 42.9 bits (100), Expect = 2e-04
Identities = 50/312 (16%), Positives = 99/312 (31%), Gaps = 47/312 (15%)
Query: 427 SNSIQLPGGDAGVIRV--EGHETKALAFSSD-------VTPRYVKADPFEGTKQAVAECW 477
+ GG G+ + E L +D + K D AVA C
Sbjct: 32 KEVLGGLGGFGGMFDLSKFALEEPVLVSGTDGVGTKLMLAFMADKHDTI--GIDAVAMCV 89
Query: 478 RNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNET 537
+I+ GA+PL D + G E +I +G R+A ++ G +
Sbjct: 90 NDIVVQGAEPLFFLDYIACGKAEPSKIENIVKGISEGCRQAG----CALIGGETAEMPGM 145
Query: 538 NGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECAS-SNI 596
+ VGI+ ++T + G +++ + + G H + +
Sbjct: 146 YSTEEY-DLAGFTVGIVDKKKIVTG-EKIEAGHVLIGLASSGIHSNGYSLVRKVLLEDGE 203
Query: 597 GPPPKVDCHLEKNHGFFVLS-----------MINAKKITACHDISTGGLIITLAEMTISS 645
++ LE G +L ++ ++ I+ GG I + M
Sbjct: 204 LSLDRIYGRLELPLGEELLKPTKIYVKPILELLKNHEVYGMAHITGGGFIENIPRMLP-- 261
Query: 646 AKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVMSEAN 690
+G+ + + K F ++ G VV + E+ ++
Sbjct: 262 -EGIGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIFNMGIGMVVAVKEEDAKDIVRLLE 320
Query: 691 NKNIPLRYLGKV 702
+ R +G+
Sbjct: 321 EQGETARIIGRT 332
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase;
1.90A {Thermus thermophilus HB8}
Length = 311
Score = 80.1 bits (196), Expect = 2e-15
Identities = 46/305 (15%), Positives = 80/305 (26%), Gaps = 23/305 (7%)
Query: 62 TTGKHVIQGPGENAGVVDIGGGDCVVFK---MESHNHPSYIEPYQGAATGVGGILRDIFT 118
PG++AG V G ++ + + P++ GV D+
Sbjct: 19 GYPPEAPLPPGDDAGGVWAEGRAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLA 78
Query: 119 MGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNII 178
RP+ L +V G A + G +GG+ +
Sbjct: 79 KMGRPLGFTLGLFLPEDLEEGFVL---ELVRGAAEAAKRLGAFLLGGDTNRGVEVALTVS 135
Query: 179 VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQ 238
A A+ G + GR G + E K R
Sbjct: 136 GYALAEAPLPRKALPGDLL-------YLAGDRWGRTGAAIRAHYEGRSLEGFPKIREAAF 188
Query: 239 VGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE 298
P L L + + + +E+ + L D +
Sbjct: 189 YPLPRLELLALSGLLRGSLDSSDGLAETLWQLADLGVGVEVEA-----LPLYPDVLAFAG 243
Query: 299 EGMTAYEMMLS--ESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRG 356
A E++L E E ++++ E + GL G + V RG
Sbjct: 244 SEEAALELVLYGGEEFE-AVLVVPQEGAAAVEARAKAKGLPLFRAGRVVAGE--GVYLRG 300
Query: 357 EEVAN 361
+
Sbjct: 301 APLPR 305
Score = 62.4 bits (150), Expect = 3e-10
Identities = 50/287 (17%), Positives = 98/287 (34%), Gaps = 20/287 (6%)
Query: 433 PGGDAGVIRVEGHETKALAFSSDV----TPRYVKADPFEGTKQAVAECWRNIIATGAKPL 488
PG DAG + EG +A +D PFE + VA +++A +PL
Sbjct: 28 PGDDAGGVWAEG---RAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLAKMGRPL 84
Query: 489 AITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTI 548
T L +E + + V +G EA + L ++ G+ + E
Sbjct: 85 GFTLGLFLPEDLEEGFVLELV---RGAAEAAKRLGAFLLGGDTNRGVEVALTVSGYALAE 141
Query: 549 AGVGILPDYSLMTRIDSAHEGD--LILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHL 606
A + + + G + +G L+ E A P P+++ L
Sbjct: 142 APLPRKALPGDLLYLAGDRWGRTGAAIRAHYEGRSLEGFPKIREAA---FYPLPRLEL-L 197
Query: 607 EKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPFLF 666
+ + ++ G+ + + + + + E + L+
Sbjct: 198 ALSGLLRGSLDSSDGLAETLWQLADLGVGVEVEALPLYPD---VLAFAGSEEAALELVLY 254
Query: 667 GEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV-SGSTLSIHNI 712
G ++ V+ + E V + A K +PL G+V +G + +
Sbjct: 255 GGEEFEAVLVVPQEGAAAVEARAKAKGLPLFRAGRVVAGEGVYLRGA 301
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta
proteins, cytoplasm, purine biosynthesis, structural
genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Length = 348
Score = 71.8 bits (175), Expect = 5e-13
Identities = 52/330 (15%), Positives = 87/330 (26%), Gaps = 47/330 (14%)
Query: 62 TTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAAT-------------- 107
T V+ G G G+ D+ + P I G T
Sbjct: 31 TMRPEVLGGIGGFGGLFDLSA--------LGYRQPVLISGTDGVGTKLKLAFLLDRHDTI 82
Query: 108 ---GVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVG 164
V + DI GA P+ ++ + G K ++ GV G G +G
Sbjct: 83 GIDCVAMCVNDIIVQGAEPLFFLDYIACGKAVPEKIAAIVKGVADGC----VEAGCALIG 138
Query: 165 GEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASE 224
GE +P + + + I +G + G S+
Sbjct: 139 GETAEMPGMYDEDEYDLAGFAVGVAEKERLITGETIQAGDALVGLPSSGLHSNGYSLVRR 198
Query: 225 EFGENIAKKRPTVQVGDPFTGK--------CLLEACLELMNTDAVIAIQDMGAAGLTCSA 276
E + + + + + + GL +
Sbjct: 199 IVFEQAKLSLDEIYEPLDVPLGEELLKPTRIYAKLLRSVRERFTIKGMAHITGGGLIENI 258
Query: 277 IEMGNQG-NLGITLDLDKVP-----TCEEGMTAYEMMLSESQE--RMLMILNPEKQHKAQ 328
M G I L + E+G E M S +++ ++PE
Sbjct: 259 PRMLPPGIGARIQLGSWPILPIFDFLREKGSLEEEEMFSVFNMGIGLVLAVSPETAAPLV 318
Query: 329 EILNKWGLHFSIIGITTNDKLFRVIHRGEE 358
E L++ G IIG V G
Sbjct: 319 EWLSERGEPAYIIGEVAKGA--GVSFAGGG 346
Score = 43.3 bits (101), Expect = 2e-04
Identities = 42/309 (13%), Positives = 93/309 (30%), Gaps = 39/309 (12%)
Query: 427 SNSIQLPGGDAGVIRV--EGHETKALAFSSD-----VTPRYVKADPFEGTKQAVAECWRN 479
+ GG G+ + G+ L +D + ++ VA C +
Sbjct: 34 PEVLGGIGGFGGLFDLSALGYRQPVLISGTDGVGTKLKLAFLLDRHDTIGIDCVAMCVND 93
Query: 480 IIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNG 539
II GA+PL D + G + VKG+ + C ++ G +
Sbjct: 94 IIVQGAEPLFFLDYIACGKAV----PEKIAAIVKGVADGCVEAGCALIGGETAEMPGMYD 149
Query: 540 QSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIG-- 597
+ + A + + ++ GD ++ + + G H +
Sbjct: 150 EDEYDLAGFAVGVAEKERLI--TGETIQAGDALVGLPSSGLHSNGYSLVRRIVFEQAKLS 207
Query: 598 --------PPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGM 649
P + L+ + L ++ T ++ + + G+
Sbjct: 208 LDEIYEPLDVPLGEELLKPTRIYAKLLRSVRERFT-IKGMAHITGGGLIENIPRMLPPGI 266
Query: 650 DIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVMSEANNKNI 694
+ + F F ++G V+ +SPE ++ + +
Sbjct: 267 GARIQLGSWPILPIFDFLREKGSLEEEEMFSVFNMGIGLVLAVSPETAAPLVEWLSERGE 326
Query: 695 PLRYLGKVS 703
P +G+V+
Sbjct: 327 PAYIIGEVA 335
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional
enzyme, structural genomics consortium,
nucleotide-binding, purine biosynthesis; 2.10A {Homo
sapiens}
Length = 334
Score = 65.6 bits (159), Expect = 3e-11
Identities = 46/321 (14%), Positives = 96/321 (29%), Gaps = 50/321 (15%)
Query: 78 VDIGGGDCVVFKMESHNHPSYIEPYQGAAT-GVG---------------GI------LRD 115
VD+GG +F +++ + +P + T GVG G + D
Sbjct: 8 VDLGG-FAGLFDLKAAG---FKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVND 63
Query: 116 IFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNN 175
I GA P+ ++ G + T+ +++G+ + + P
Sbjct: 64 ILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEY 123
Query: 176 NIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGEN--IAKK 233
++ A + I V +G + G S+ + ++
Sbjct: 124 DLAGFAVGAMERDQKLPHLER---ITEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSS 180
Query: 234 RPTVQVGDPFTGKCLLEACLE-------LMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLG 286
GD G LL ++ + V A + GL + I LG
Sbjct: 181 PAPDGCGDQTLGDLLLTPTRIYSHSLLPVLRSGHVKAFAHITGGGLLEN-IPRVLPEKLG 239
Query: 287 ITLDLDKVPTCEEGMTAYEMMLSESQE---------RMLMILNPEKQHKAQEILNKWGLH 337
+ LD + +E +++++ E+ + + +
Sbjct: 240 VDLDAQTWRIPRVFSWLQQEGHLSEEEMARTFNCGVGAVLVVSKEQTEQILRGIQQHKEE 299
Query: 338 FSIIG--ITTNDKLFRVIHRG 356
+IG + + RV +
Sbjct: 300 AWVIGSVVARAEGSPRVKVKN 320
Score = 51.0 bits (121), Expect = 1e-06
Identities = 34/256 (13%), Positives = 78/256 (30%), Gaps = 30/256 (11%)
Query: 472 AVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNV 531
VA C +I+A GA+PL D + G + K +A ++ G
Sbjct: 56 LVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAG----CALLGGET 111
Query: 532 SFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSM----- 586
+ + + A + D + ++ EGD+++ I + G H +
Sbjct: 112 AEMPDMYPPGEYDLAGFAVGAMERDQK-LPHLERITEGDVVVGIASSGLHSNGFSLVRKI 170
Query: 587 -----YSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEM 641
+ + + L + S++ + + L +
Sbjct: 171 VAKSSLQYSSPAPDGCGDQTLGDLLLTPTRIYSHSLLPVLRSGHVKAFAHITGGGLLENI 230
Query: 642 TISSAKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVM 686
+ + + L + + P+ F + + +G V+ +S E + ++
Sbjct: 231 PRVLPEKLGVDLDAQTWRIPRVFSWLQQEGHLSEEEMARTFNCGVGAVLVVSKEQTEQIL 290
Query: 687 SEANNKNIPLRYLGKV 702
+G V
Sbjct: 291 RGIQQHKEEAWVIGSV 306
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold,
csgid, ATP-binding, nucleotide-BIND purine biosynthesis;
HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp}
Length = 350
Score = 59.3 bits (143), Expect = 3e-09
Identities = 56/329 (17%), Positives = 95/329 (28%), Gaps = 48/329 (14%)
Query: 62 TTGKHVIQGPGENAGVVDIGGG-------------DCVVFKMESHNHPSYIEPYQGAATG 108
T + V+ G G + + D V K + +
Sbjct: 33 TFTQDVLTGLGSFGSLYSLKNIINNYDDPVLVQSIDGVGTKTKVAVM--CGKFENLGYDL 90
Query: 109 VGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVE 168
DI MGA+P+ ++ + + + +V G++ GV VGGE
Sbjct: 91 FSAATNDIVVMGAKPITFLDYVAHDKLDPAIMEE----LVKGMSKACAECGVSLVGGETA 146
Query: 169 FLP--CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEF 226
+P I + GI I + + G + L + G+ +
Sbjct: 147 EMPGVYQAGEIDMVGVITGIVDRKRIINGENIKEGDIVFGLSS----SGLHTNGYSFARK 202
Query: 227 GENIAKKRPTVQVGDPFTGKCLLEACLE------------LMNTDAVIAIQDMGAAGLTC 274
GK + + LE L N + + + G
Sbjct: 203 LFFDVAGNKHTDTYPELEGKTIGDVLLEPHINYTNIIHDFLDNGVDIKGMAHITGGGFIE 262
Query: 275 SAIEMGNQGNLGITLDLDKVPT-------CEEGMTAYEMMLSESQE--RMLMILNPEKQH 325
+ + QG LG +D D T G + M M +I + ++
Sbjct: 263 NIPRVLPQG-LGAQIDKDSFATPAIFKLMQRIGDISEFEMYRSFNMGIGMTIIASQDQFD 321
Query: 326 KAQEILNK-WGLHFSIIGITTNDKLFRVI 353
K QE+ K IG TN +I
Sbjct: 322 KMQELAKKHTNTKLYQIGKITNSGKVEII 350
Score = 50.5 bits (120), Expect = 1e-06
Identities = 40/265 (15%), Positives = 77/265 (29%), Gaps = 41/265 (15%)
Query: 472 AVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNV 531
+ +I+ GAKP+ D + + VKG+ +AC +V G
Sbjct: 90 LFSAATNDIVVMGAKPITFLDYVAHDKLDPA----IMEELVKGMSKACAECGVSLVGGET 145
Query: 532 SFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLEC 591
+ GI+ ++ ++ EGD++ + + G H + ++ +
Sbjct: 146 AEMPGVYQAGEIDM-VGVITGIVDRKRIING-ENIKEGDIVFGLSSSGLHTNGYSFARKL 203
Query: 592 ASSNIGPPPKVDCHLEKNHGFFVLSMI---------------NAKKITACHDISTGGLII 636
G D + E ++ N I I+ GG I
Sbjct: 204 FFDVAGNKHT-DTYPELEGKTIGDVLLEPHINYTNIIHDFLDNGVDIKGMAHITGGGFIE 262
Query: 637 TLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPEN 681
+ + P F + G + S +
Sbjct: 263 NIPRVLPQGLGAQIDKDSFAT---PAIFKLMQRIGDISEFEMYRSFNMGIGMTIIASQDQ 319
Query: 682 QDLVMSEAN-NKNIPLRYLGKVSGS 705
D + A + N L +GK++ S
Sbjct: 320 FDKMQELAKKHTNTKLYQIGKITNS 344
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure,
transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus}
SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A*
1vqv_A
Length = 342
Score = 48.4 bits (114), Expect = 6e-06
Identities = 41/300 (13%), Positives = 87/300 (29%), Gaps = 44/300 (14%)
Query: 422 DTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVK----ADPFEGTKQAVAECW 477
D + ++ ++ G D + K L ++DV V P +A++
Sbjct: 49 DLIKKTLESKVIGDDTAPVEYCS---KKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNV 105
Query: 478 RNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNET 537
++IA G P +LN + + +F VK E +
Sbjct: 106 SDVIANGGLPKWALISLNLPEDLEVSYVERFYIGVKRACEFYK------------CEVVG 153
Query: 538 NGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIG 597
S I+ + + R + + + + +E
Sbjct: 154 GNISKSEKIGISVFLVGETERFVGRDGARLGDSVFVSGTLGDSRAGLELLLMEKEEYEPF 213
Query: 598 PPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPI-- 655
+ HL + + + +K + GL+ + S ++I+
Sbjct: 214 ELALIQRHLRPTA--RIDYVKHIQKYANASMDISDGLVADANHLAQRSGVKIEILSEKLP 271
Query: 656 ----------EIEKDPKPFLF--GEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVS 703
+ K+P + GED Y + + E N + + +G+V
Sbjct: 272 LSNELKMYCEKYGKNPIEYALFGGED---YQLLFT------HPKERWNPFLDMTEIGRVE 322
Score = 41.1 bits (95), Expect = 0.001
Identities = 35/304 (11%), Positives = 81/304 (26%), Gaps = 36/304 (11%)
Query: 69 QGPGENAGVVDIGGGDCVV---FKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVA 125
+ G++ V+ ++ E + P + + D+ G P
Sbjct: 58 KVIGDDTAPVEYCSKKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNVSDVIANGGLPKW 117
Query: 126 AMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAG 185
A+ SL G+ + VGG + ++ +
Sbjct: 118 ALISLNLPEDLEVSYVE---RFYIGVKRACEFYKCEVVGGNISKSEKIGISVFLVGETER 174
Query: 186 IAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTG 245
+ + + +G G A + + + +
Sbjct: 175 FVGRDGARLGDSVFV----------SGTLGDSRAGLELLLMEKEEYEPFELALIQRHLRP 224
Query: 246 KCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE------ 299
++ + + GL A + + + I + +K+P E
Sbjct: 225 TARIDYVKHIQK---YANASMDISDGLVADANHLAQRSGVKIEILSEKLPLSNELKMYCE 281
Query: 300 --GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGE 357
G E L ++ L+ +P+++ L + IG + V G+
Sbjct: 282 KYGKNPIEYALFGGEDYQLLFTHPKERWNP-------FLDMTEIGRVEEGE--GVFVDGK 332
Query: 358 EVAN 361
+V
Sbjct: 333 KVEP 336
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 41.1 bits (96), Expect = 9e-04
Identities = 53/285 (18%), Positives = 78/285 (27%), Gaps = 138/285 (48%)
Query: 4 PSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTT 63
PSP+L I LT+++ ++ N H LP
Sbjct: 335 PSPMLSI---SNLTQEQVQDYVNKT----------------NSH------------LPAG 363
Query: 64 GKHV----IQGPGENAGVVDIGGGDCVVFKMESHNHPS--YIEPYQGAATGVGGILRDI- 116
K V + G +N VV G P Y G+ LR
Sbjct: 364 -KQVEISLVNGA-KNL-VV--SG------------PPQSLY---------GLNLTLRKAK 397
Query: 117 -----------FTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGI----AGYS-----N 156
F+ R + N RF + P HLL I +
Sbjct: 398 APSGLDQSRIPFS--ERKLKFSN--RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 157 SFGVP---TVGGEVEFLPCYNNNII-----------VN-----TFAAGIAKTNAI-F--- 193
+P T G L + +I V F A T+ + F
Sbjct: 454 DIQIPVYDTFDGSD--LRVLSGSISERIVDCIIRLPVKWETTTQFKA----THILDFGPG 507
Query: 194 -SSKARGIGLPLVYLGAKTGR--DGIG-----GASM---ASEEFG 227
+S G+G L T R DG G ++ +++G
Sbjct: 508 GAS---GLG-VL------THRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 32.2 bits (73), Expect = 0.39
Identities = 86/551 (15%), Positives = 159/551 (28%), Gaps = 240/551 (43%)
Query: 113 LRDIFTMGARPVAAMNS------------LRFGAIHHPKTKHLLSGVVAGIAGYS----- 155
L++ F + +F ++ S V G
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKF-------LGYVSSLVEPSKVGQFDQVLN 85
Query: 156 ---NSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLV-YLGAKT 211
F E +L N+I + AA + + N K + + + Y+ A
Sbjct: 86 LCLTEF-------ENCYLE--GNDI--HALAAKLLQENDTTLVKTKEL---IKNYITA-- 129
Query: 212 GRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAG 271
MA KK + L A + + G A
Sbjct: 130 -------RIMA----KRPFDKKSNSA----------LFRA------------VGE-GNAQ 155
Query: 272 LTCSAIEMGNQGNLGITLDLDKVPTC--E--EGMTAYEMMLSESQERMLMILNPEKQHKA 327
L AI G QGN E + Y +++ + L+ +
Sbjct: 156 LV--AI-FGGQGN---------TDDYFEELRDLYQTYHVLVGD-----LI-------KFS 191
Query: 328 QEILNKWGLHFSIIGITTN-DKLFRVIHRGEEVANLPIKALSDEAPEYDRAWCEPITIPP 386
E L+ +I T + +K+F +G + ++ L + + D+ + ++IP
Sbjct: 192 AETLS------ELIRTTLDAEKVF---TQGLNI----LEWLENPSNTPDKDYL--LSIPI 236
Query: 387 SNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHE 446
S P L+ +++L Y ++ ++ G
Sbjct: 237 SCP-LIG--------VIQLA-------------HY--VV-------------TAKLLG-- 257
Query: 447 TKALAFSSDVTPRYVKADPFEGT---KQ------AVAEC--WRNIIATGAKPLAITDNLN 495
TP + +G Q A+AE W + + K AIT +
Sbjct: 258 ---------FTPGEL-RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK--AIT--VL 303
Query: 496 FGNPEKEEIMGQFVHSVKGIREACQILDFP-------IVSGNVSFYNETNGQSIFPTP-- 546
F F+ G+R C +P I+ ++ N + + P+P
Sbjct: 304 F-----------FI----GVR--CY-EAYPNTSLPPSILEDSLE-----NNEGV-PSPML 339
Query: 547 TIAGVGILPDYSLMTRIDS--AH--EGD-----LILMIGNDGCHLDC-----SMYSLECA 592
+I+ L + ++ +H G L+ N +L S+Y L
Sbjct: 340 SISN---LTQEQVQDYVNKTNSHLPAGKQVEISLV----NGAKNLVVSGPPQSLYGLNLT 392
Query: 593 SSNIGPPPKVD 603
P +D
Sbjct: 393 LRKAKAPSGLD 403
Score = 31.5 bits (71), Expect = 0.68
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 311 SQERMLMILNPEKQHKA-QEILNKWGLHF------SIIGITTNDKLFRVIHRGEE 358
SQE+ M ++ K KA Q++ N+ HF SI+ I N+ + IH G E
Sbjct: 1626 SQEQG-MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Length = 250
Score = 30.6 bits (69), Expect = 1.3
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 124 VAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNII 178
VA +N L PKT+H ++ V I+ +++ +V G + + + + +
Sbjct: 94 VAFLNEL-------PKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSL 141
>3a2s_X Outer membrane protein II; beta barrel, porin, neisseria mening
cell membrane, cell outer membrane, ION transport,
membrane transmembrane; HET: SUC LDA; 2.20A {Neisseria
meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X*
Length = 355
Score = 28.8 bits (63), Expect = 3.9
Identities = 20/177 (11%), Positives = 41/177 (23%), Gaps = 12/177 (6%)
Query: 76 GVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRD------------IFTMGARP 123
G D+G G ++++E + G G+ + G
Sbjct: 61 GQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNV 120
Query: 124 VAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFA 183
A + + T + + S F + + N+
Sbjct: 121 NAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTK 180
Query: 184 AGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240
+ +A + G AK +A + K +V
Sbjct: 181 SSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVV 237
>2e0g_A Chromosomal replication initiator protein DNAA; domain structure,
structural genomics, NPPSFA; NMR {Escherichia coli K12}
Length = 107
Score = 28.4 bits (63), Expect = 5.6
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 406 LSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVE 443
L +PN WV ++Y I G DA +R E
Sbjct: 39 LYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFE 76
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 28.2 bits (62), Expect = 6.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 639 AEMTISSA--KGMDIILPIEIEKDPKPFLFGEDQGRY 673
A+MT+ A + I E++ DP +FGED G
Sbjct: 1 AQMTMVQAITDALRI----ELKNDPNVLIFGEDVGVN 33
>3cnc_A Fiber protein; adenovirus fiber KNOB, viral protein; 2.40A {Human
adenovirus 16}
Length = 220
Score = 28.0 bits (62), Expect = 7.1
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 19/94 (20%)
Query: 404 KLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAF--SSDVTPRYV 461
++++ + ++ M T A F S+ P
Sbjct: 99 QIITYLSSLKSNLNFKDNQNMATGTI-----------------TSAKGFMPSTTAYPFIT 141
Query: 462 KADPFEGTKQAVAECWRNIIATGAKPLAITDNLN 495
A EC+ PL +T LN
Sbjct: 142 YATETLNEDYIYGECYYKSTNGTLFPLKVTVTLN 175
>1o22_A Orphan protein TM0875; structural genomics, JCSG, PSI, protein
structure initiative, joint center for structural
genomics, unknown function; 2.00A {Thermotoga maritima}
SCOP: d.238.1.1
Length = 170
Score = 28.1 bits (62), Expect = 7.2
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 324 QHKAQEILNKWGLHFSIIGITTNDKLF---RVIHRGEEVANLPIKALSDE 370
+ K +EI N+ G+ + ++F V+ GEEV + IKAL+ +
Sbjct: 34 EKKMKEIFNETGVSLEPVNSELIGRIFLKISVLEEGEEVPSFAIKALTPK 83
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 6,416,597
Number of extensions: 302647
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 44
Length of query: 737
Length of database: 5,693,230
Length adjustment: 99
Effective length of query: 638
Effective length of database: 3,293,074
Effective search space: 2100981212
Effective search space used: 2100981212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)