BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780970|ref|YP_003065383.1|
phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter
asiaticus str. psy62]
         (737 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 737

 Score = 1525 bits (3948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/737 (100%), Positives = 737/737 (100%)

Query: 1   MSKPSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTL 60
           MSKPSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTL
Sbjct: 1   MSKPSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTL 60

Query: 61  PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120
           PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG
Sbjct: 61  PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120

Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180
           ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN
Sbjct: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180

Query: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240
           TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG
Sbjct: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240

Query: 241 DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG 300
           DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG
Sbjct: 241 DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG 300

Query: 301 MTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVA 360
           MTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVA
Sbjct: 301 MTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVA 360

Query: 361 NLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQ 420
           NLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQ
Sbjct: 361 NLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQ 420

Query: 421 YDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI 480
           YDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI
Sbjct: 421 YDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI 480

Query: 481 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ 540
           IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ
Sbjct: 481 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ 540

Query: 541 SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP 600
           SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP
Sbjct: 541 SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP 600

Query: 601 KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKD 660
           KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKD
Sbjct: 601 KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKD 660

Query: 661 PKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSIHNILNIPVATL 720
           PKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSIHNILNIPVATL
Sbjct: 661 PKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSIHNILNIPVATL 720

Query: 721 QTKYESWFPEFISESTV 737
           QTKYESWFPEFISESTV
Sbjct: 721 QTKYESWFPEFISESTV 737


>gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 86

 Score = 26.9 bits (58), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 342 GITTNDKLFRVIHRGEEVANLPIKAL 367
            ++TNDK F    RG   ++LPIK L
Sbjct: 60  SVSTNDKPFTYPSRGASSSDLPIKGL 85


>gi|254780446|ref|YP_003064859.1| hypothetical protein CLIBASIA_01655 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 171

 Score = 26.9 bits (58), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 12/48 (25%)

Query: 663 PFLFGEDQGRYVVCISPENQDLVMSE----------ANNKNIPLRYLG 700
           P L+ EDQ + V+C S E  + VMS            N KN+P  +LG
Sbjct: 73  PCLYKEDQEQVVLCSSSE--ECVMSRWNAAVHTKEILNEKNMPYPFLG 118


>gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 624

 Score = 26.6 bits (57), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 465 PFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDF 524
           P   TK  V +  +     G +P+ + + ++  +   +E++ +       +      LDF
Sbjct: 119 PMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174

Query: 525 PIVSGNVSF 533
           PI+ G+  F
Sbjct: 175 PILYGSGRF 183


>gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 424

 Score = 25.4 bits (54), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 464 DPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREAC 519
           +PF+G        +  ++ T   P  I  N+ FG+PE + +M +    +  I  +C
Sbjct: 257 NPFQGV------LFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSC 306


>gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 469

 Score = 25.4 bits (54), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 109 VGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPT 162
           V  +  D+F   +  ++ +NS+ +  I      + +S +  G    + SF VPT
Sbjct: 201 VKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPT 254


>gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 430

 Score = 24.6 bits (52), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 327 AQEILNKWGLHFSIIGITTND 347
           A+EIL +  LH+ ++ + T D
Sbjct: 306 AEEILKRLDLHYRVVSLCTGD 326


>gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score = 24.6 bits (52), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 14/113 (12%)

Query: 473 VAECWRNIIATGAKPLAITDNLNFG--NPEKEEIMGQFVHSVKGIREACQILDFPIVSGN 530
           VA C  +I+  GA+PL   D L     NP+      Q    +KGI   C      ++ G 
Sbjct: 91  VAMCVNDILTHGAEPLFFLDYLATSQLNPD------QATSIIKGIAAGCCQAGCALIGGE 144

Query: 531 VSFYNETNGQSIFPTPTIAG--VGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581
            +   E  G        +AG  VG +    L++  ++   GDLIL + + G H
Sbjct: 145 TA---EMPGLYHDRDYDLAGFAVGAVERKELLSP-ENVCAGDLILGLPSSGLH 193


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 24.3 bits (51), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 227 GENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMG-----N 281
           G +  KKRP++ +GD      L     E++  D  I     G A +    + M      +
Sbjct: 20  GLDAVKKRPSMYIGDTDGESGLHHMIYEVL--DNAIDESLEGYADIITVTLNMDGSCTVS 77

Query: 282 QGNLGITLDLDKVPTCEEGMTAYEMMLSE 310
               GI  DL K    EEG++A E++++ 
Sbjct: 78  DNGRGIPTDLHK----EEGISAAEVIMTR 102


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,349
Number of Sequences: 1233
Number of extensions: 20802
Number of successful extensions: 57
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 11
length of query: 737
length of database: 328,796
effective HSP length: 81
effective length of query: 656
effective length of database: 228,923
effective search space: 150173488
effective search space used: 150173488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)