BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62] (737 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62] Length = 737 Score = 1525 bits (3948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 737/737 (100%), Positives = 737/737 (100%) Query: 1 MSKPSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTL 60 MSKPSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTL Sbjct: 1 MSKPSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTL 60 Query: 61 PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120 PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG Sbjct: 61 PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120 Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN Sbjct: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180 Query: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG Sbjct: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240 Query: 241 DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG 300 DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG Sbjct: 241 DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG 300 Query: 301 MTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVA 360 MTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVA Sbjct: 301 MTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVA 360 Query: 361 NLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQ 420 NLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQ Sbjct: 361 NLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQ 420 Query: 421 YDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI 480 YDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI Sbjct: 421 YDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI 480 Query: 481 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ 540 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ Sbjct: 481 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ 540 Query: 541 SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP 600 SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP Sbjct: 541 SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP 600 Query: 601 KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKD 660 KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKD Sbjct: 601 KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKD 660 Query: 661 PKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSIHNILNIPVATL 720 PKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSIHNILNIPVATL Sbjct: 661 PKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSIHNILNIPVATL 720 Query: 721 QTKYESWFPEFISESTV 737 QTKYESWFPEFISESTV Sbjct: 721 QTKYESWFPEFISESTV 737 >gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62] Length = 86 Score = 26.9 bits (58), Expect = 1.1, Method: Compositional matrix adjust. Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 342 GITTNDKLFRVIHRGEEVANLPIKAL 367 ++TNDK F RG ++LPIK L Sbjct: 60 SVSTNDKPFTYPSRGASSSDLPIKGL 85 >gi|254780446|ref|YP_003064859.1| hypothetical protein CLIBASIA_01655 [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 26.9 bits (58), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 12/48 (25%) Query: 663 PFLFGEDQGRYVVCISPENQDLVMSE----------ANNKNIPLRYLG 700 P L+ EDQ + V+C S E + VMS N KN+P +LG Sbjct: 73 PCLYKEDQEQVVLCSSSE--ECVMSRWNAAVHTKEILNEKNMPYPFLG 118 >gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 624 Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 465 PFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDF 524 P TK V + + G +P+ + + ++ + +E++ + + LDF Sbjct: 119 PMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 Query: 525 PIVSGNVSF 533 PI+ G+ F Sbjct: 175 PILYGSGRF 183 >gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 25.4 bits (54), Expect = 3.3, Method: Compositional matrix adjust. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 464 DPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREAC 519 +PF+G + ++ T P I N+ FG+PE + +M + + I +C Sbjct: 257 NPFQGV------LFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSC 306 >gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 469 Score = 25.4 bits (54), Expect = 3.7, Method: Compositional matrix adjust. Identities = 13/54 (24%), Positives = 25/54 (46%) Query: 109 VGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPT 162 V + D+F + ++ +NS+ + I + +S + G + SF VPT Sbjct: 201 VKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPT 254 >gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 430 Score = 24.6 bits (52), Expect = 5.6, Method: Compositional matrix adjust. Identities = 8/21 (38%), Positives = 14/21 (66%) Query: 327 AQEILNKWGLHFSIIGITTND 347 A+EIL + LH+ ++ + T D Sbjct: 306 AEEILKRLDLHYRVVSLCTGD 326 >gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 357 Score = 24.6 bits (52), Expect = 6.4, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 14/113 (12%) Query: 473 VAECWRNIIATGAKPLAITDNLNFG--NPEKEEIMGQFVHSVKGIREACQILDFPIVSGN 530 VA C +I+ GA+PL D L NP+ Q +KGI C ++ G Sbjct: 91 VAMCVNDILTHGAEPLFFLDYLATSQLNPD------QATSIIKGIAAGCCQAGCALIGGE 144 Query: 531 VSFYNETNGQSIFPTPTIAG--VGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581 + E G +AG VG + L++ ++ GDLIL + + G H Sbjct: 145 TA---EMPGLYHDRDYDLAGFAVGAVERKELLSP-ENVCAGDLILGLPSSGLH 193 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 24.3 bits (51), Expect = 7.8, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%) Query: 227 GENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMG-----N 281 G + KKRP++ +GD L E++ D I G A + + M + Sbjct: 20 GLDAVKKRPSMYIGDTDGESGLHHMIYEVL--DNAIDESLEGYADIITVTLNMDGSCTVS 77 Query: 282 QGNLGITLDLDKVPTCEEGMTAYEMMLSE 310 GI DL K EEG++A E++++ Sbjct: 78 DNGRGIPTDLHK----EEGISAAEVIMTR 102 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.136 0.407 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 482,349 Number of Sequences: 1233 Number of extensions: 20802 Number of successful extensions: 57 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 11 length of query: 737 length of database: 328,796 effective HSP length: 81 effective length of query: 656 effective length of database: 228,923 effective search space: 150173488 effective search space used: 150173488 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)