HHsearch alignment for GI: 254780971 and conserved domain: COG1348

>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism].
Probab=90.42  E-value=0.44  Score=27.80  Aligned_cols=88  Identities=28%  Similarity=0.379  Sum_probs=52.3

Q ss_pred             CCCCCCH-H---HHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCC------CCCCC---CHHHHH---HHHHHHHH
Q ss_conf             4970647-9---9999999854996399821546445647899728734------54311---406775---20021212
Q gi|254780971|r    8 IPGLNRD-N---DMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFS------YGDYL---RCGAIA---ARTPVMQA   71 (219)
Q Consensus         8 ~pGsNcd-~---e~~~A~~~~~~~~~~~v~~~~~~l~~~d~lvipGGFS------ygD~l---~aG~i~---~~~~~~~~   71 (219)
T Consensus        91 epGvGCAGRGVitai~~Le~lgaf~~~----~DvviyDVLGDVVCGGFAmPiReg~AdeiyIVtSge~MalYAANNI~kg  166 (278)
T COG1348          91 EPGVGCAGRGVITAINLLEELGAFEED----LDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEMMALYAANNIAKG  166 (278)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCC----CCEEEEECCCCEEECCEEEEHHCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf             999884651199999999981873012----8789995357734746000200266637999956835899998899999


Q ss_pred             HHHHHHCCCEEEE--ECCCHHHHEECCCHH
Q ss_conf             2332205971786--064031010000010
Q gi|254780971|r   72 IKKKAQQGIKVMG--ICNGFQILVELNLLP   99 (219)
Q Consensus        72 i~~~~~~g~~vLG--ICNGfQiL~elGLlP   99 (219)
T Consensus       167 i~k~a~~~~~rLgGiIcNsR~~~~e~e~v~  196 (278)
T COG1348         167 IRKYAKTGGVRLGGIICNSRSVDRERELVE  196 (278)
T ss_pred             HHHHHHCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf             999873379631457745777643799999