HHsearch alignment for GI: 254780971 and conserved domain: COG1348
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism].
Probab=90.42 E-value=0.44 Score=27.80 Aligned_cols=88 Identities=28% Similarity=0.379 Sum_probs=52.3
Q ss_pred CCCCCCH-H---HHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCC------CCCCC---CHHHHH---HHHHHHHH
Q ss_conf 4970647-9---9999999854996399821546445647899728734------54311---406775---20021212
Q gi|254780971|r 8 IPGLNRD-N---DMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFS------YGDYL---RCGAIA---ARTPVMQA 71 (219)
Q Consensus 8 ~pGsNcd-~---e~~~A~~~~~~~~~~~v~~~~~~l~~~d~lvipGGFS------ygD~l---~aG~i~---~~~~~~~~ 71 (219)
T Consensus 91 epGvGCAGRGVitai~~Le~lgaf~~~----~DvviyDVLGDVVCGGFAmPiReg~AdeiyIVtSge~MalYAANNI~kg 166 (278)
T COG1348 91 EPGVGCAGRGVITAINLLEELGAFEED----LDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEMMALYAANNIAKG 166 (278)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCC----CCEEEEECCCCEEECCEEEEHHCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 999884651199999999981873012----8789995357734746000200266637999956835899998899999
Q ss_pred HHHHHHCCCEEEE--ECCCHHHHEECCCHH
Q ss_conf 2332205971786--064031010000010
Q gi|254780971|r 72 IKKKAQQGIKVMG--ICNGFQILVELNLLP 99 (219)
Q Consensus 72 i~~~~~~g~~vLG--ICNGfQiL~elGLlP 99 (219)
T Consensus 167 i~k~a~~~~~rLgGiIcNsR~~~~e~e~v~ 196 (278)
T COG1348 167 IRKYAKTGGVRLGGIICNSRSVDRERELVE 196 (278)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 999873379631457745777643799999