HHsearch alignment for GI: 254780971 and conserved domain: PRK05297

Probab=100.00  E-value=0  Score=507.71  Aligned_cols=215  Identities=33%  Similarity=0.505  Sum_probs=195.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCC-----CCCCCCEEEECCCCCCCCCCCHHHHHHHH-----HHHHH
Q ss_conf             689984497064799999999854996399821546-----44564789972873454311406775200-----21212
Q gi|254780971|r    2 KTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDT-----DIPDVDLIVIPGGFSYGDYLRCGAIAART-----PVMQA   71 (219)
Q Consensus         2 kvaVl~~pGsNcd~e~~~A~~~~~~~~~~~v~~~~~-----~l~~~d~lvipGGFSygD~l~aG~i~~~~-----~~~~~   71 (219)
T Consensus      1040 kVAIlreqG~Nge~EmAaAF~~-AGF~~~DVhmsDL~~g~~~L~~f~glva~GGFSyGDvlGsgkGwA~sil~N~~~r~~ 1118 (1294)
T PRK05297       1040 KVAILREQGVNSHVEMAAAFDR-AGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQ 1118 (1294)
T ss_pred             CEEEECCCCCCCHHHHHHHHHH-CCCCEEEEEHHHCCCCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHH
T ss_conf             3899768987967999999998-699348865231003611787791899878768767775678999999729999999


Q ss_pred             HHHHHH-CCCEEEEECCCHHHHEECCCH-HH-----HHCCCCCCCEEEEEEEEEECCCHHHHHHHCCCCCEEEEEEECCC
Q ss_conf             233220-597178606403101000001-01-----10124433245422576752523577641379968998620133
Q gi|254780971|r   72 IKKKAQ-QGIKVMGICNGFQILVELNLL-PG-----ILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHD  144 (219)
Q Consensus        72 i~~~~~-~g~~vLGICNGfQiL~elGLl-Pg-----~l~~N~s~rf~~r~~~~~v~~~~s~~~~~~~~~~~l~~piaHgE  144 (219)
T Consensus      1119 f~~Ff~r~DtfsLGICNGcQ~L~~Lg~i~pG~e~~P~~~~N~S~rfEsR~~~v~I~~s~Si~l~~m~-Gs~lpi~VaHGE 1197 (1294)
T PRK05297       1119 FAAFFARPDTFALGVCNGCQMMSNLKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQESPSIFLQGMA-GSRLPIAVAHGE 1197 (1294)
T ss_pred             HHHHHCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEEEEEEECCCCCHHHCCCC-CCEEEEEEECCC
T ss_conf             9999739994599953889999977997888778972222454787898678898898986666578-987548887251


Q ss_pred             EEE-EECHHHHHHHHHCCEEEEECCC---------CCCCCCCCCCEEEEECCCCCEEEECCCCHHHCCCCCCC-------
Q ss_conf             023-3086774115422503653168---------88889881126688869998999848843432210067-------
Q gi|254780971|r  145 GNY-FIDAKGLAEIEKNNQIVFRYAS---------GTNPNGSLHDIAGVINRRGNVLGMMPHPENIIEKFHGG-------  207 (219)
Q Consensus       145 Grf-~~~~~~l~~l~~~~~i~~~Y~d---------~~NPNGS~~~IAgi~s~~G~vlgmMPHPER~~~~~~~~-------  207 (219)
T Consensus      1198 Gr~~f~~~~~~~~l~~~gqia~~YvD~~G~pt~~YP~NPNGS~~~IaGitS~DGR~l~mMpHpER~~~~~q~s~~P~~~~ 1277 (1294)
T PRK05297       1198 GRAEFPDAEDLAAAEASGLVALRYVDNHGQVTETYPANPNGSPNGITGLTTADGRVTIMMPHPERVFRTVQNSWHPEDWG 1277 (1294)
T ss_pred             CEEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHEEEEECCCCCEEEECCCHHHCCCCCCCCCCCCCCC
T ss_conf             12662888999999977966899978999981448889988821035886698888657378677030454764698668


Q ss_pred             CCH--HHHHHHHC
Q ss_conf             762--89998642
Q gi|254780971|r  208 IDG--RGLFASLL  218 (219)
Q Consensus       208 ~dG--~~~f~~~~  218 (219)
T Consensus      1278 ~~sPW~~~F~nAr 1290 (1294)
T PRK05297       1278 EDSPWMRMFRNAR 1290 (1294)
T ss_pred             CCCCHHHHHHHHH
T ss_conf             8981999999999