HHsearch alignment for GI: 254780971 and conserved domain: PRK12838

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed.
Probab=98.29  E-value=1.8e-05  Score=55.77  Aligned_cols=174  Identities=22%  Similarity=0.376  Sum_probs=86.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECC-C---CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             6899844970647999999998549963998215-4---64456478997287345431140677520021212233220
Q gi|254780971|r    2 KTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQS-D---TDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQ   77 (219)
Q Consensus         2 kvaVl~~pGsNcd~e~~~A~~~~~~~~~~~v~~~-~---~~l~~~d~lvipGGFSygD~l~aG~i~~~~~~~~~i~~~~~   77 (219)
T Consensus       169 ~V~viD~-G--vK~nIlr~L~~r-g~~V~VvP~~~~~~~i~~~~pDGiflSNGP--GDP------~~~~~~i~~vr~l~~  236 (356)
T PRK12838        169 HVALIDF-G--LKHSILRSLSKR-GCNVTVLPYNASLEDIKNLNPDGIVLSNGP--GDP------KELQPYLPTIKDLAS  236 (356)
T ss_pred             EEEEEEC-C--CHHHHHHHHHHC-CCEEEEECCCCCCCHHHCCCCCEEEECCCC--CCH------HHHHHHHHHHHHHHC
T ss_conf             7999958-8--369999999978-988999899887540232497489943899--896------887889999999974


Q ss_pred             CCCEEEEECCCHHHHEEC-CCHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHCCCCCEEEEEEECCCEEEEECHHHHHH
Q ss_conf             597178606403101000-0010110124433245422576752523577641379968998620133023308677411
Q gi|254780971|r   78 QGIKVMGICNGFQILVEL-NLLPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAE  156 (219)
Q Consensus        78 ~g~~vLGICNGfQiL~el-GLlPg~l~~N~s~rf~~r~~~~~v~~~~s~~~~~~~~~~~l~~piaHgEGrf~~~~~~l~~  156 (219)
T Consensus       237 -~~PifGICLGHQllalA~Gakt------~KmkfGHrG~NhPV~--------~~~tgkv~-IT-SQNHG-yaVd~~sl--  296 (356)
T PRK12838        237 -SYPILGICLGHQLIALALGAET------YKLPFGHRGANHPVI--------DLATGRVW-MT-SQNHG-YVVDEDSI--  296 (356)
T ss_pred             -CCCEEEECHHHHHHHHHHCCEE------EECCCCCCCCCCCCE--------ECCCCCEE-EE-ECCCC-CEECCCCC--
T ss_conf             -9888997488999999709748------641556688782647--------76899489-97-26876-16776768--


Q ss_pred             HHHCCEEEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHC
Q ss_conf             54225036531688888988112668886999899984884343221006776289998642
Q gi|254780971|r  157 IEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL  218 (219)
Q Consensus       157 l~~~~~i~~~Y~d~~NPNGS~~~IAgi~s~~G~vlgmMPHPER~~~~~~~~~dG~~~f~~~~  218 (219)
T Consensus       297 -~~~~-~~vt~~---nln--D~tveGi~~~~~p~fsVQfHPEa~P----GP~D~~~lF~~F~  347 (356)
T PRK12838        297 -DEKQ-LSVTFF---NLN--DGSIEGLRHKKLPVLSVQFHPEAHP----GPHDAEYIFDEFL  347 (356)
T ss_pred             -CCCC-EEEEEE---CCC--CCCEEEEEECCCCEEEEEECCCCCC----CCCCCHHHHHHHH
T ss_conf             -9886-599999---089--9966107988998688712889998----9874388999999