HHsearch alignment for GI: 254780971 and conserved domain: TIGR00313
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=99.04 E-value=4.4e-10 Score=85.31 Aligned_cols=175 Identities=19% Similarity=0.270 Sum_probs=101.1
Q ss_pred CEEEEEECCC-CC-CHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHH----HHHHHHHHHHHHHH
Q ss_conf 9689984497-06-479999999985499639982154644564789972873454311406----77520021212233
Q gi|254780971|r 1 MKTAIVQIPG-LN-RDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG----AIAARTPVMQAIKK 74 (219)
Q Consensus 1 mkvaVl~~pG-sN-cd~e~~~A~~~~~~~~~~~v~~~~~~l~~~d~lvipGGFSygD~l~aG----~i~~~~~~~~~i~~ 74 (219)
T Consensus 249 irv~v~RLpriSNFTD~eP---L~~~~~V~v~fl-~l~~~L~~~d~vIiPGs-------k~ti~dl~~L~~~~~~~~i~~ 317 (502)
T TIGR00313 249 IRVGVVRLPRISNFTDFEP---LRYEADVAVKFL-ELEDSLDGLDAVIIPGS-------KDTIADLKALKESGFAEEILD 317 (502)
T ss_pred EEEEEEECCCCCCCCCCCH---HHCCCCCEEEEE-CCCCCCCCCEEEEECCC-------CCHHHHHHHHHHCCCHHHHHH
T ss_conf 4899985376356677522---111487289983-26887788448996799-------657899999974686679999
Q ss_pred HHHCCCEEEEECCCHHHHEE-----------------CCCHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHCCCCCEEE
Q ss_conf 22059717860640310100-----------------0001011012443324542257675252357764137996899
Q gi|254780971|r 75 KAQQGIKVMGICNGFQILVE-----------------LNLLPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIK 137 (219)
Q Consensus 75 ~~~~g~~vLGICNGfQiL~e-----------------lGLlPg~l~~N~s~rf~~r~~~~~v~~~~s~~~~~~~~~~~l~ 137 (219)
T Consensus 318 ~~~~ig~V~GICGGYQ~LG~~l~D~~~~E~~~~~~~GLgLLD~~T~f~~~~K~~-~q~~~~-~~~~~vIl~~~~G~~V~G 395 (502)
T TIGR00313 318 LAKEIGIVIGICGGYQMLGKELVDKEKVESDVGDVEGLGLLDAKTEFREEEKIT-KQSQGR-VEGNAVILDRIRGETVKG 395 (502)
T ss_pred HHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCEEEECCCCCEE-EEECCE-EECCCEEEECCCCCEEEE
T ss_conf 960698899834760210031036322267710002221254145671771378-511015-625834661541230344
Q ss_pred EEEECCCEEEEEC-HHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCC
Q ss_conf 8620133023308-67741154225036531688888988112668886999899984884
Q gi|254780971|r 138 CPVAHHDGNYFID-AKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHP 197 (219)
Q Consensus 138 ~piaHgEGrf~~~-~~~l~~l~~~~~i~~~Y~d~~NPNGS~~~IAgi~s~~G~vlgmMPHP 197 (219)
T Consensus 396 YEi-H-~G~t~~~~Sqd~~Pl~~~drGfG-~~-~~G~~Gsi~~~~-----dg~~~GtYlHG 447 (502)
T TIGR00313 396 YEI-H-EGLTRRKASQDVKPLFEVDRGFG-NV-SEGFDGSIDKAV-----DGNVWGTYLHG 447 (502)
T ss_pred EEE-E-CCCCCCCCCCCCCCHHHHCCCCC-CC-CCCCCCCCHHHC-----CCEEEECHHCC
T ss_conf 772-0-45001355300255144313621-23-678763201022-----41031210033