HHsearch alignment for GI: 254780971 and conserved domain: TIGR00337

>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=98.83  E-value=2.3e-08  Score=74.34  Aligned_cols=157  Identities=28%  Similarity=0.382  Sum_probs=100.1

Q ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHE-E-----CCCH-------------H-
Q ss_conf             564789972873454311406775200212122332205971786064031010-0-----0001-------------0-
Q gi|254780971|r   40 PDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILV-E-----LNLL-------------P-   99 (219)
Q Consensus        40 ~~~d~lvipGGFSygD~l~aG~i~~~~~~~~~i~~~~~~g~~vLGICNGfQiL~-e-----lGLl-------------P-   99 (219)
T Consensus       372 ~~~DGILVPGGF--G~RG~EGKI~A-------i~yAREN~iPFLGICLGmQ~A~IEFARNV~Gl~~AnStEf~~~t~~p~  442 (571)
T TIGR00337       372 SEVDGILVPGGF--GERGVEGKIRA-------IKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPK  442 (571)
T ss_pred             HCCCEEEECCCC--CCCCCHHHHHH-------HHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCC
T ss_conf             306806836888--97660247899-------999876369733021777888999976534798887412464557773


Q ss_pred             --H-HHCCC-------CCC-----------CEEEEEEEEEECCCHHHHHHHCCCCCEEEEEEECCCEEEEECHHHHHHHH
Q ss_conf             --1-10124-------433-----------24542257675252357764137996899862013302330867741154
Q gi|254780971|r  100 --G-ILMRN-------CSL-----------KFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIE  158 (219)
Q Consensus       100 --g-~l~~N-------~s~-----------rf~~r~~~~~v~~~~s~~~~~~~~~~~l~~piaHgEGrf~~~~~~l~~l~  158 (219)
T Consensus       443 ~~Vv~LlpEq~d~~~~~~VRt~~~~lGGTMRLG~ypc~l~~~~eWt~a~klYg~~~v~ERH-RH---RYE~Nn~~~~~~E  518 (571)
T TIGR00337       443 SPVVDLLPEQKDQNGNKEVRTEIEDLGGTMRLGLYPCILKPGSEWTLAFKLYGKEEVYERH-RH---RYEVNNEYREELE  518 (571)
T ss_pred             CCCEECCCCCCCCCCCEECCEEECCCCCEEECCCCCEEECCCCCHHHHHHHCCCCEEEEEC-CC---CCCCCHHHHHHHH
T ss_conf             3111425322244676001301013872430587221771787232675533786788712-44---4122757898998


Q ss_pred             HCCEEEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHC
Q ss_conf             225036531688888988112668886999899984884343221006776289998642
Q gi|254780971|r  159 KNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL  218 (219)
Q Consensus       159 ~~~~i~~~Y~d~~NPNGS~~~IAgi~s~~G~vlgmMPHPER~~~~~~~~~dG~~~f~~~~  218 (219)
T Consensus       519 ~~GL~vsG~----S~dg~l~EiiE~~-~HP~FvA~QFHPEF~Srp----~~p~plF~Gfv  569 (571)
T TIGR00337       519 NKGLIVSGT----SPDGRLVEIIELP-DHPFFVACQFHPEFTSRP----NRPHPLFLGFV  569 (571)
T ss_pred             HCCCEEEEE----CCCCCEEEEEEEC-CCCEEEEEECCCCCCCCC----CCCCCCCHHHH
T ss_conf             579589998----6998389999847-978688862267511677----88887505532