HHsearch alignment for GI: 254780971 and conserved domain: TIGR00379
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=96.53 E-value=0.01 Score=38.19 Aligned_cols=122 Identities=26% Similarity=0.369 Sum_probs=72.9
Q ss_pred CEEEEEECCCCCCH-HHHHHHHHHHCCCCEEE-EECCCCCCC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 96899844970647-99999999854996399-821546445-6478997287345431140677520021212233220
Q gi|254780971|r 1 MKTAIVQIPGLNRD-NDMIKAITKIIGQSPIL-VWQSDTDIP-DVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQ 77 (219)
Q Consensus 1 mkvaVl~~pGsNcd-~e~~~A~~~~~~~~~~~-v~~~~~~l~-~~d~lvipGGFSygD~l~aG~i~~~~~~~~~i~~~~~ 77 (219)
T Consensus 252 ~kiava~D~aFnFYY~dNld~L~~~~-a~l~ffspL~D~eLPPdvD~lYiGGGfP---ElFae~L~~N~~l~~~i~~f~~ 327 (464)
T TIGR00379 252 VKIAVARDQAFNFYYQDNLDALEENA-AELVFFSPLEDKELPPDVDALYIGGGFP---ELFAEELEKNEKLRDSIKEFIQ 327 (464)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCCCCEEEECCCCH---HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37899973321403577899997478-2798517766877971215765078852---4536533444899999999973
Q ss_pred CCCEEEEECCCHHHHEE------------CCCHHHHHCCCCCCCEEEE-EEEEEECCCHHHHHHH
Q ss_conf 59717860640310100------------0001011012443324542-2576752523577641
Q gi|254780971|r 78 QGIKVMGICNGFQILVE------------LNLLPGILMRNCSLKFVCK-QVLLEVVNSNTAFTKS 129 (219)
Q Consensus 78 ~g~~vLGICNGfQiL~e------------lGLlPg~l~~N~s~rf~~r-~~~~~v~~~~s~~~~~ 129 (219)
T Consensus 328 ~G~P~YGECGGLMYL~~Sl~~~Eg~~~PM~g~LP~~~~--M~~~~Q~lgY~~a~~l~-~~~i~~~ 389 (464)
T TIGR00379 328 QGRPIYGECGGLMYLSESLDNVEGEIFPMVGLLPLAAK--MTGRVQGLGYVVAEVLK-DCLIAKK 389 (464)
T ss_pred CCCEEEEECCCHHHHCCCCCCCCCEEECCCCCCCCCEE--ECCEECCCHHHHHHHHH-HHHHHHH
T ss_conf 78838985060443200101589705421131387314--14310001032232332-1256652