HHsearch alignment for GI: 254780971 and conserved domain: TIGR00379

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=96.53  E-value=0.01  Score=38.19  Aligned_cols=122  Identities=26%  Similarity=0.369  Sum_probs=72.9

Q ss_pred             CEEEEEECCCCCCH-HHHHHHHHHHCCCCEEE-EECCCCCCC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             96899844970647-99999999854996399-821546445-6478997287345431140677520021212233220
Q gi|254780971|r    1 MKTAIVQIPGLNRD-NDMIKAITKIIGQSPIL-VWQSDTDIP-DVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQ   77 (219)
Q Consensus         1 mkvaVl~~pGsNcd-~e~~~A~~~~~~~~~~~-v~~~~~~l~-~~d~lvipGGFSygD~l~aG~i~~~~~~~~~i~~~~~   77 (219)
T Consensus       252 ~kiava~D~aFnFYY~dNld~L~~~~-a~l~ffspL~D~eLPPdvD~lYiGGGfP---ElFae~L~~N~~l~~~i~~f~~  327 (464)
T TIGR00379       252 VKIAVARDQAFNFYYQDNLDALEENA-AELVFFSPLEDKELPPDVDALYIGGGFP---ELFAEELEKNEKLRDSIKEFIQ  327 (464)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCCCCEEEECCCCH---HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             37899973321403577899997478-2798517766877971215765078852---4536533444899999999973


Q ss_pred             CCCEEEEECCCHHHHEE------------CCCHHHHHCCCCCCCEEEE-EEEEEECCCHHHHHHH
Q ss_conf             59717860640310100------------0001011012443324542-2576752523577641
Q gi|254780971|r   78 QGIKVMGICNGFQILVE------------LNLLPGILMRNCSLKFVCK-QVLLEVVNSNTAFTKS  129 (219)
Q Consensus        78 ~g~~vLGICNGfQiL~e------------lGLlPg~l~~N~s~rf~~r-~~~~~v~~~~s~~~~~  129 (219)
T Consensus       328 ~G~P~YGECGGLMYL~~Sl~~~Eg~~~PM~g~LP~~~~--M~~~~Q~lgY~~a~~l~-~~~i~~~  389 (464)
T TIGR00379       328 QGRPIYGECGGLMYLSESLDNVEGEIFPMVGLLPLAAK--MTGRVQGLGYVVAEVLK-DCLIAKK  389 (464)
T ss_pred             CCCEEEEECCCHHHHCCCCCCCCCEEECCCCCCCCCEE--ECCEECCCHHHHHHHHH-HHHHHHH
T ss_conf             78838985060443200101589705421131387314--14310001032232332-1256652