HHsearch alignment for GI: 254780971 and conserved domain: cd03136

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=97.53  E-value=0.0003  Score=48.00  Aligned_cols=92  Identities=21%  Similarity=0.416  Sum_probs=60.4

Q ss_pred             EEEEECCCCC-----CHHHHHHHHHHHCCCCEE---EEECC-----------------CCCCCCCCEEEECCCCCCCCCC
Q ss_conf             8998449706-----479999999985499639---98215-----------------4644564789972873454311
Q gi|254780971|r    3 TAIVQIPGLN-----RDNDMIKAITKIIGQSPI---LVWQS-----------------DTDIPDVDLIVIPGGFSYGDYL   57 (219)
Q Consensus         3 vaVl~~pGsN-----cd~e~~~A~~~~~~~~~~---~v~~~-----------------~~~l~~~d~lvipGGFSygD~l   57 (219)
T Consensus         1 igill~~g~~~l~~ag~~evf~~An~~~~~~~f~v~~vs~~~~~V~~~~G~~i~~~~~~~~~~~~D~liV~Gg~~~~~--   78 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGAPVTSSNGLRVAPDAALEDAPPLDYLFVVGGLGARR--   78 (185)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEECCCCEEECCCCHHHCCCCCEEEECCCCCCCC--
T ss_conf             999996998488899999999998852599857999996599804737970896676700167678999878888021--


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHEECCCHHHH
Q ss_conf             40677520021212233220597178606403101000001011
Q gi|254780971|r   58 RCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGI  101 (219)
Q Consensus        58 ~aG~i~~~~~~~~~i~~~~~~g~~vLGICNGfQiL~elGLlPg~  101 (219)
T Consensus        79 -----~~~~~~~~~L~~~~~~g~~v~svctGa~~LA~aGlL~g~  117 (185)
T cd03136          79 -----AVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGR  117 (185)
T ss_pred             -----CCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCC
T ss_conf             -----479999999999987099899864799999981887999