HHsearch alignment for GI: 254780971 and conserved domain: cd03137
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.01 E-value=1.1e-05 Score=57.11 Aligned_cols=92 Identities=21% Similarity=0.478 Sum_probs=60.7
Q ss_pred EEEEECCCCC-----CHHHHHHHHHHHCCCCEE---EEECC-----------------CCCCCCCCEEEECCCCCCCCCC
Q ss_conf 8998449706-----479999999985499639---98215-----------------4644564789972873454311
Q gi|254780971|r 3 TAIVQIPGLN-----RDNDMIKAITKIIGQSPI---LVWQS-----------------DTDIPDVDLIVIPGGFSYGDYL 57 (219)
Q Consensus 3 vaVl~~pGsN-----cd~e~~~A~~~~~~~~~~---~v~~~-----------------~~~l~~~d~lvipGGFSygD~l 57 (219)
T Consensus 1 I~ill~~gf~~~~~~~~~evl~~An~~~~~~~~~~~~vs~~g~~V~ss~G~~i~~d~~~~~~~~~D~livpgg~~~---- 76 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGGPVRSSSGLSLVADAGLDALAAADTVIVPGGPDV---- 76 (187)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCEEECCCCHHHCCCCCEEEECCCCCH----
T ss_conf 9999979972999999999999989855999879999956999158479978953765334564699998898861----
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHEECCCHHH
Q ss_conf 4067752002121223322059717860640310100000101
Q gi|254780971|r 58 RCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPG 100 (219)
Q Consensus 58 ~aG~i~~~~~~~~~i~~~~~~g~~vLGICNGfQiL~elGLlPg 100 (219)
T Consensus 77 --~~~~~~~~l~~~L~~~~~~~~~l~~ictG~~~LA~aGLL~g 117 (187)
T cd03137 77 --DGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDG 117 (187)
T ss_pred --HHCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCC
T ss_conf --10259999999999997538668875314098874566589