RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus Liberibacter asiaticus str. psy62] (219 letters) >gnl|CDD|179609 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I; Provisional. Length = 219 Score = 389 bits (1002), Expect = e-109 Identities = 119/218 (54%), Positives = 157/218 (72%), Gaps = 1/218 (0%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60 MK A++ PG N D DM +A+ ++G P VW +TD+ VD +V+PGGFSYGDYLRCG Sbjct: 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCG 60 Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120 AIAA +P+M+A+K+ A++G V+GICNGFQIL E LLPG L RN SLKF+C+ V L V Sbjct: 61 AIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVE 120 Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180 N++T FT Y+ ++I+ P+AH +GNY+ D + L +E N Q+VFRY NPNGS++DI Sbjct: 121 NNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYC-DENPNGSVNDI 179 Query: 181 AGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL 218 AG++N +GNVLGMMPHPE +E G DG LF SLL Sbjct: 180 AGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLL 217 >gnl|CDD|162511 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea. Length = 227 Score = 323 bits (829), Expect = 3e-89 Identities = 118/225 (52%), Positives = 161/225 (71%), Gaps = 8/225 (3%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60 MK A+++ PG N D D + A+ +++G +VW D +PD D +V+PGGFSYGDYLR G Sbjct: 1 MKVAVIRFPGTNCDRDTVYAL-RLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAG 59 Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120 AIAA +P+MQ +++ A++G+ V+GICNGFQILVE LLPG L+ N SL+F+C+ V L V Sbjct: 60 AIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVE 119 Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRY-------ASGTNP 173 N++T FTK+YK ++I+ P+AH +G Y+ D + LA +E N+Q+VFRY A NP Sbjct: 120 NADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANP 179 Query: 174 NGSLHDIAGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL 218 NGS+ +IAG++N RGNVLGMMPHPE EK GG DG LF SL+ Sbjct: 180 NGSVGNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLV 224 >gnl|CDD|179238 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I; Provisional. Length = 261 Score = 166 bits (422), Expect = 5e-42 Identities = 89/227 (39%), Positives = 132/227 (58%), Gaps = 29/227 (12%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTD-----IPDVDLIVIPGGFSYGD 55 ++ A++++ G N +++ +KA + +G P V +D + D D +VIPGGFS GD Sbjct: 4 IRVAVLRMEGTNCEDETVKAF-RRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGD 62 Query: 56 YLRCGAI-AAR--TPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGI----------L 102 Y+R GAI AAR + + I++ +G ++GICNGFQ+LVEL LLPG L Sbjct: 63 YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPGFDEIAEKPEMAL 122 Query: 103 MRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGN-YFIDAKGLAEIEKNN 161 N S +F C+ L+ N FTK K + + PVAH +G F + + L + +N+ Sbjct: 123 TVNESNRFECRPTYLKKENRKCIFTKLLK-KDVFQVPVAHAEGRVVFSEEEILERLIEND 181 Query: 162 QIVFRYA--SGT------NPNGSLHDIAGVINRRGNVLGMMPHPENI 200 QIVFRY +G NPNGS+++IAG+ N +GNV+G+MPHPE Sbjct: 182 QIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGNVIGLMPHPERA 228 >gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. Length = 1239 Score = 101 bits (252), Expect = 2e-22 Identities = 73/253 (28%), Positives = 109/253 (43%), Gaps = 41/253 (16%) Query: 5 IVQIPGLNRDNDMIKAITKIIGQSPILVWQSDT-------------DIPDVDLIVIPGGF 51 I PG N + D KA K + ++++++ +I ++++PGGF Sbjct: 982 IPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGF 1041 Query: 52 SYGDYLRCGA--IAA--RTP-VMQAIKKKAQQGIKVMGICNGFQILVELNLLP------- 99 S GD A IAA R P V AI + ++GICNGFQ LV+ LLP Sbjct: 1042 SAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAA 1101 Query: 100 ----GILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLA 155 L N + V K V + ++N+ + + I PV+H +G + + LA Sbjct: 1102 NETSPTLTYNDINRHVSKIVRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLA 1161 Query: 156 EIEKNNQIVFRYASGT---------NPNGSLHDIAGVINRRGNVLGMMPHPENIIEKFHG 206 E+ +N QI +Y NPNGS I G+ + G + G M H E + Sbjct: 1162 ELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITSPDGRIFGKMGHSERYGDGLFK 1221 Query: 207 GIDG---RGLFAS 216 I G + LFAS Sbjct: 1222 NIPGNKDQHLFAS 1234 >gnl|CDD|130796 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. Length = 1310 Score = 87.5 bits (217), Expect = 2e-18 Identities = 66/226 (29%), Positives = 93/226 (41%), Gaps = 33/226 (14%) Query: 2 KTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDL-----IVIPGGFSYGDY 56 K AI++ G+N D +M A + G V SD V L + GGFSYGD Sbjct: 1057 KVAILREQGVNGDREMAAAFDRA-GFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDV 1115 Query: 57 LRCG-----AIAARTPV---MQAIKKKAQQGIKVMGICNGFQILVEL-NLLPGI-----L 102 L G +I + QA K+ +G+CNG Q+L L +PG Sbjct: 1116 LGAGKGWAKSILFNPRLRDQFQAFFKRPDT--FSLGVCNGCQMLSNLLEWIPGTENWPHF 1173 Query: 103 MRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGN-YFIDAKGLAEIEKNN 161 +RN S +F + + V S + + + VAH +G F + A+ + + Sbjct: 1174 VRNNSERFEARVASVRVGESPSIMLRGMA-GSRLPVAVAHGEGYAAFSSPELQAQADASG 1232 Query: 162 QIVFRYASG---------TNPNGSLHDIAGVINRRGNVLGMMPHPE 198 RY NPNGS IAG+ + G V MMPHPE Sbjct: 1233 LAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGRVTIMMPHPE 1278 >gnl|CDD|179999 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional. Length = 1290 Score = 79.1 bits (196), Expect = 8e-16 Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 26/181 (14%) Query: 41 DVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGI------KVMGICNGFQILVE 94 D +V GGFSYGD L G A++ + + + +G+CNG Q++ Sbjct: 1080 DFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSN 1139 Query: 95 LNLL-PGI-----LMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCP--VAHHDGN 146 L + PG +RN S +F + L+EV S + F + +++ P VAH +G Sbjct: 1140 LKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQESPSIFLQGMAGSRL---PIAVAHGEGR 1196 Query: 147 YFIDAKGLAEIEKNNQIVFRYASGT---------NPNGSLHDIAGVINRRGNVLGMMPHP 197 LA +E + RY NPNGS + I G+ G V MMPHP Sbjct: 1197 AEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNGSPNGITGLTTADGRVTIMMPHP 1256 Query: 198 E 198 E Sbjct: 1257 E 1257 >gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase; Provisional. Length = 1307 Score = 72.5 bits (178), Expect = 8e-14 Identities = 69/234 (29%), Positives = 97/234 (41%), Gaps = 39/234 (16%) Query: 2 KTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDL-----IVIPGGFSYGDY 56 K AI++ G N D +M A G P V SD + L IV GGFSY D Sbjct: 1039 KVAIIREEGSNGDREMAAAFYAA-GFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADV 1097 Query: 57 LR-----CGAIAARTPVMQAIKK-KAQQGIKVMGICNGFQILVELNLLPGI--------- 101 L G+I P++Q ++ + +G+CNG Q++ L +PG Sbjct: 1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAG 1157 Query: 102 -------LMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGN-YFIDAKG 153 + N S +F C+ + + +S K + + AH +G YF D Sbjct: 1158 GDPSQPRFVHNESGRFECRFTSVTIEDSPAIMLKGME-GSTLGVWAAHGEGRAYFPDESV 1216 Query: 154 LAEIEKNNQIVFRY--ASGT-------NPNGSLHDIAGVINRRGNVLGMMPHPE 198 L E+ K+N RY G NPNGS IA + + G L MMPHPE Sbjct: 1217 LDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDGRHLAMMPHPE 1270 >gnl|CDD|116299 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase domain. Length = 158 Score = 48.8 bits (117), Expect = 1e-06 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Query: 36 DTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQIL 92 D D DL+++PGG L A+ + + +A+++ A+ G ++GIC G+Q+L Sbjct: 2 DALPGDADLVILPGGKPTIQDL---ALLRNSGLDEALREHAEAGGPILGICGGYQML 55 >gnl|CDD|179125 PRK00784, PRK00784, cobyric acid synthase; Provisional. Length = 488 Score = 47.4 bits (114), Expect = 3e-06 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 13/63 (20%) Query: 35 SDTDIPDVDLIVIPGGFS---YGD--YLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGF 89 +PD DL+++PG S D +LR AI+ A++G V+GIC G+ Sbjct: 284 PGEPLPDADLVILPG--SKNTIADLAWLRESGWDE------AIRAHARRGGPVLGICGGY 335 Query: 90 QIL 92 Q+L Sbjct: 336 QML 338 >gnl|CDD|179218 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase; Validated. Length = 451 Score = 44.0 bits (105), Expect = 3e-05 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Query: 28 SPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICN 87 SP+ +D +PD D + + GG+ L +AA T + +I+ A G + C Sbjct: 278 SPL----ADEALPDCDGLYLGGGYP---ELFAAELAANTSMRASIRAAAAAGKPIYAECG 330 Query: 88 GFQILVE 94 G L E Sbjct: 331 GLMYLGE 337 >gnl|CDD|184114 PRK13527, PRK13527, glutamine amidotransferase subunit PdxT; Provisional. Length = 200 Score = 42.2 bits (100), Expect = 1e-04 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNG 88 D+PD D ++IPGG S G + R ++ IK+K ++G+ ++G C G Sbjct: 40 DLPDCDALIIPGGES----TTIGRLMKREGILDEIKEKIEEGLPILGTCAG 86 >gnl|CDD|183868 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 205 Score = 37.8 bits (89), Expect = 0.002 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 21/95 (22%) Query: 19 KAITKIIGQSPILVWQSD-TDIPDVDLIVIPGGFSYGDYLRCGAIAA--RTPVMQAIKKK 75 KA+ ++ G ++ SD +I D +++PG ++ D A+A + + IK+ Sbjct: 17 KALERL-GAEAVIT--SDPEEILAADGVILPGVGAFPD-----AMANLRERGLDEVIKEA 68 Query: 76 AQQGIKVMGICNGFQILVE----------LNLLPG 100 G ++GIC G Q+L E L LLPG Sbjct: 69 VASGKPLLGICLGMQLLFESSEEFGETEGLGLLPG 103 >gnl|CDD|130450 TIGR01383, not_thiJ, DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus. Length = 179 Score = 36.1 bits (84), Expect = 0.007 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Query: 35 SDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGIC 86 D D+ + D IV+PGG + LR ++ +KK+ +G V IC Sbjct: 57 EDVDLEEFDAIVLPGGMPGAENLR-----NSKLLLNILKKQESKGKLVAAIC 103 >gnl|CDD|184379 PRK13896, PRK13896, cobyrinic acid a,c-diamide synthase; Provisional. Length = 433 Score = 36.3 bits (84), Expect = 0.007 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Query: 28 SPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICN 87 SP+ + +PD D + +PGG+ A +P + + +A G+ V+G C Sbjct: 265 SPV----AGDPLPDCDGVYLPGGYPE----LHADALADSPALDELADRAADGLPVLGECG 316 Query: 88 GFQILVE 94 G L E Sbjct: 317 GLMALAE 323 >gnl|CDD|183869 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 200 Score = 35.2 bits (82), Expect = 0.013 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 15/77 (19%) Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE--- 94 +I D D IV+PG ++G A+ +P+ I + A+ G +GIC G Q+L E Sbjct: 35 EILDADGIVLPGVGAFGA-----AMENLSPLRDVILEAARSGKPFLGICLGMQLLFESSE 89 Query: 95 -------LNLLPGILMR 104 L L PG ++R Sbjct: 90 EGGGVRGLGLFPGRVVR 106 >gnl|CDD|129413 TIGR00313, cobQ, cobyric acid synthase CobQ. Length = 475 Score = 35.2 bits (81), Expect = 0.015 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 36 DTDIPDVDLIVIPGG---FSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQIL 92 D + D ++IPG + L+ A + I A++G V+GIC G+Q+L Sbjct: 279 DDSLTGCDAVIIPGSKSTIADLYALKQSGFA------EEILDFAKEGGIVIGICGGYQML 332 >gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 199 Score = 34.1 bits (79), Expect = 0.031 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 16/78 (20%) Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAA--RTPVMQAIKKKAQQGIKVMGICNGFQILVE- 94 +I D +++PG ++G A+ + + + +A+K+ ++ V+GIC G Q+L E Sbjct: 34 EIAGADKVILPGVGAFGQ-----AMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES 88 Query: 95 --------LNLLPGILMR 104 L L+PG + R Sbjct: 89 SEEGNVKGLGLIPGDVKR 106 >gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF. Length = 538 Score = 33.1 bits (76), Expect = 0.051 Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 38/198 (19%) Query: 34 QSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILV 93 Q+ DI + D ++ PG ++G + + + +A+++ Q +GIC G Q+L Sbjct: 37 QTPEDILNADRLIFPGVGAFGSAMD---VLNNRGMAEALREYIQNDRPFLGICLGLQLLF 93 Query: 94 E----------LNLLPGILMR-NCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAH 142 E L ++PG++ R + S + N K ++++ Sbjct: 94 ESSEENGPVEGLGVIPGVVGRFDSSNGLRVPH-----IGWNALQIT--KDSELLDGVGGR 146 Query: 143 HDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHPE---- 198 H YF+ + ++N V + N G IA V R+GNV + HPE Sbjct: 147 H--VYFVHSYRATPSDENKDWV---LATCNYGGEF--IASV--RKGNVHAVQFHPEKSGA 197 Query: 199 ---NIIEKF-HGGIDGRG 212 +I+ +F Sbjct: 198 TGLSILRRFLEPKSSATQ 215 >gnl|CDD|161825 TIGR00337, PyrG, CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). Length = 525 Score = 33.1 bits (76), Expect = 0.053 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 9/63 (14%) Query: 31 LVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQ 90 L + + VD I++PGGF G I AIK + I +GIC G Q Sbjct: 333 LEEEGAEFLKGVDGILVPGGFGERGVE--GKI-------LAIKYARENNIPFLGICLGMQ 383 Query: 91 ILV 93 + V Sbjct: 384 LAV 386 >gnl|CDD|162331 TIGR01382, PfpI, intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs. Length = 166 Score = 31.6 bits (72), Expect = 0.14 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 36 DTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVEL 95 + + + D +VIPGG + +YLR ++ +++ ++G V IC+G Q+L+ Sbjct: 55 EVNPEEYDALVIPGGRA-PEYLR-----LNNKAVRLVREFVEKGKPVAAICHGPQLLISA 108 Query: 96 NLLPG 100 +L G Sbjct: 109 GVLRG 113 >gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated. Length = 476 Score = 31.2 bits (71), Expect = 0.20 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 17/74 (22%) Query: 22 TKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQ-GI 80 TKII ++ I +I D+D ++IPGG + G++ +KK+ Sbjct: 23 TKIIDENNI------KEIKDLDGLIIPGG----SLVESGSLT------DELKKEILNFDG 66 Query: 81 KVMGICNGFQILVE 94 ++GIC+GFQIL E Sbjct: 67 YIIGICSGFQILSE 80 >gnl|CDD|181818 PRK09393, ftrA, transcriptional activator FtrA; Provisional. Length = 322 Score = 31.1 bits (71), Expect = 0.24 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%) Query: 43 DLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPG 100 D IVIPG R P+++A++ +G ++ IC+G +L LL G Sbjct: 77 DTIVIPG-------WRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDG 127 >gnl|CDD|162563 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6. Length = 196 Score = 30.8 bits (70), Expect = 0.28 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 32/99 (32%) Query: 25 IGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKK--------- 75 +G P++V S + D +++PG ++G M +++ Sbjct: 21 VGAEPVVVKDSK-EAELADKLILPGVGAFGA------------AMARLRENGLDLFVELV 67 Query: 76 AQQGIKVMGICNGFQILVE----------LNLLPGILMR 104 + G V+GIC G Q+L E L L+ G +++ Sbjct: 68 VRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVK 106 >gnl|CDD|161846 TIGR00379, cobB, cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. Length = 449 Score = 29.8 bits (67), Expect = 0.50 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%) Query: 23 KIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKV 82 +++ SP+ DT++PDVD + I GGF L ++ + +IK QG+ + Sbjct: 272 ELVPFSPL----EDTELPDVDAVYIGGGFP---ELFAEELSQNQALRDSIKTFIHQGLPI 324 Query: 83 MGICNGFQILVE 94 G C G L + Sbjct: 325 YGECGGLMYLSQ 336 >gnl|CDD|172505 PRK14004, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 210 Score = 29.5 bits (66), Expect = 0.66 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 31 LVWQSD-TDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGF 89 V+ SD I + +++PG G + + T + I K + G + GIC GF Sbjct: 26 FVFTSDPETIENSKALILPGD---GHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGF 82 Query: 90 QILVE 94 QIL E Sbjct: 83 QILFE 87 >gnl|CDD|180047 PRK05380, pyrG, CTP synthetase; Validated. Length = 533 Score = 29.2 bits (67), Expect = 0.86 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 13/55 (23%) Query: 41 DVDLIVIPGGFSYGDYLRC--GAIAARTPVMQAIKKKAQQGIKVMGICNGFQILV 93 VD I++PGGF G+ R G I AI+ + I +GIC G Q+ V Sbjct: 343 GVDGILVPGGF--GE--RGIEGKIL-------AIRYARENNIPFLGICLGMQLAV 386 >gnl|CDD|177961 PLN02327, PLN02327, CTP synthase. Length = 557 Score = 28.5 bits (64), Expect = 1.3 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 9/53 (16%) Query: 41 DVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILV 93 D I++PGGF GD G I A K + + +GIC G QI V Sbjct: 362 GADGILVPGGF--GDRGVEGKILA-------AKYARENKVPYLGICLGMQIAV 405 >gnl|CDD|131124 TIGR02069, cyanophycinase, cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. Length = 250 Score = 28.1 bits (63), Expect = 2.1 Identities = 12/38 (31%), Positives = 22/38 (57%) Query: 51 FSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNG 88 F+ GD LR ++ TP++ ++K+ +GI + G G Sbjct: 88 FTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAG 125 >gnl|CDD|116336 pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus. Length = 219 Score = 27.6 bits (62), Expect = 2.3 Identities = 8/21 (38%), Positives = 14/21 (66%) Query: 72 IKKKAQQGIKVMGICNGFQIL 92 I+ ++G ++GIC G Q+L Sbjct: 99 IRAALERGKPILGICRGMQLL 119 >gnl|CDD|116082 pfam07461, NADase_NGA, Nicotine adenine dinucleotide glycohydrolase (NADase). This family consists of several bacterial nicotine adenine dinucleotide glycohydrolase (NGA) proteins which appear to be specific to Streptococcus pyogenes. NAD glycohydrolase (NADase) is a potential virulence factor. Streptococcal NADase may contribute to virulence by its ability to cleave beta-NAD at the ribose-nicotinamide bond, depleting intracellular NAD pools and producing the potent vasoactive compound nicotinamide. Length = 446 Score = 27.8 bits (61), Expect = 2.4 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 66 TPVMQAIKKKAQQGIKVMGICNGFQILV-ELNLLPGILMRNCSLKFVCKQVL--LEVVNS 122 T VM+A +++ VM +G V E N G + S KF + + +VN Sbjct: 53 TKVMEANATSSKEDNHVMHTLDGSMSTVWEENSPGGGVGEVLSYKFASPMHIGRILIVNG 112 Query: 123 NTAFTKSY-KMNQIIKCPVAHHDGNYFI 149 +T+ ++Y K N+I K V +++GN + Sbjct: 113 DTSSKENYYKKNRIAKADVKYYNGNKLV 140 >gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 209 Score = 27.4 bits (62), Expect = 2.6 Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 36/88 (40%) Query: 37 TDIPDV----DLIVIPGGFSYGDYLRCGAIAARTPVMQAIKK----------KAQQGIKV 82 T PD D +V+PG GA A M+ ++ G Sbjct: 33 TADPDAVAAADRVVLPG---------VGAFAD---CMRGLRAVGLGEAVIEAVLAAGRPF 80 Query: 83 MGICNGFQILVE----------LNLLPG 100 +GIC G Q+L E L L+PG Sbjct: 81 LGICVGMQLLFERGLEHGDTPGLGLIPG 108 >gnl|CDD|163512 TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase. Length = 184 Score = 27.4 bits (61), Expect = 2.7 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQIL 92 + ++D ++IPGG S + + + + ++ G+ V G C G +L Sbjct: 33 QLDEIDGLIIPGGES----TTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIML 83 >gnl|CDD|177981 PLN02347, PLN02347, GMP synthetase. Length = 536 Score = 27.3 bits (61), Expect = 2.8 Identities = 8/20 (40%), Positives = 15/20 (75%) Query: 76 AQQGIKVMGICNGFQILVEL 95 ++G+ V+GIC G Q++V+ Sbjct: 83 RERGVPVLGICYGMQLIVQK 102 >gnl|CDD|162663 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. Length = 219 Score = 27.5 bits (61), Expect = 2.9 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 5/70 (7%) Query: 147 YFIDAKGLAEIEK-----NNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHPENII 201 ++ + + +++F +A T L I + HP + Sbjct: 131 HYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDL 190 Query: 202 EKFHGGIDGR 211 E+ G + + Sbjct: 191 ERALGELGWK 200 >gnl|CDD|183597 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed. Length = 360 Score = 26.6 bits (60), Expect = 5.3 Identities = 8/25 (32%), Positives = 16/25 (64%) Query: 68 VMQAIKKKAQQGIKVMGICNGFQIL 92 ++ I++ ++ I + GIC G Q+L Sbjct: 237 AIEMIRELLEKKIPIFGICLGHQLL 261 >gnl|CDD|184112 PRK13525, PRK13525, glutamine amidotransferase subunit PdxT; Provisional. Length = 189 Score = 26.7 bits (60), Expect = 5.6 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNG 88 D+ ++D +++PGG S G + +++ +++ G+ V G C G Sbjct: 35 DLDEIDGLILPGGES----TTMGKLLRDFGLLEPLREFIASGLPVFGTCAG 81 >gnl|CDD|171871 PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 192 Score = 26.3 bits (58), Expect = 5.8 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 28/81 (34%) Query: 36 DTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGI-------KVMGICNG 88 I + I++PG + D M IK+ I K++GIC G Sbjct: 32 SKIIDQAETIILPGVGHFKD------------AMSEIKRLNLNAILAKNTDKKMIGICLG 79 Query: 89 FQILVE---------LNLLPG 100 Q++ E L +PG Sbjct: 80 MQLMYEHSDEGDASGLGFIPG 100 >gnl|CDD|178980 PRK00331, PRK00331, glucosamine--fructose-6-phosphate aminotransferase; Reviewed. Length = 604 Score = 26.2 bits (59), Expect = 6.8 Identities = 6/19 (31%), Positives = 11/19 (57%) Query: 69 MQAIKKKAQQGIKVMGICN 87 + A++ + G K + ICN Sbjct: 353 LAALRLAKELGAKTLAICN 371 >gnl|CDD|179857 PRK04517, PRK04517, hypothetical protein; Provisional. Length = 216 Score = 26.0 bits (57), Expect = 7.1 Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 144 DGNYFIDAKGLAEIEKNNQIVFRYA 168 G +F K L + NQIVFRY+ Sbjct: 44 SGGFFASTKTLELPDGENQIVFRYS 68 >gnl|CDD|183835 PRK12999, PRK12999, pyruvate carboxylase; Reviewed. Length = 1146 Score = 26.3 bits (59), Expect = 7.4 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 6/29 (20%) Query: 187 RG-NVLGMMPHPENIIEKF-----HGGID 209 RG N +G +P+N++ F GID Sbjct: 614 RGSNAVGYTNYPDNVVRAFVREAAAAGID 642 >gnl|CDD|178842 PRK00074, guaA, GMP synthase; Reviewed. Length = 511 Score = 25.8 bits (58), Expect = 9.1 Identities = 7/16 (43%), Positives = 11/16 (68%) Query: 79 GIKVMGICNGFQILVE 94 G+ V+GIC G Q++ Sbjct: 75 GVPVLGICYGMQLMAH 90 >gnl|CDD|177360 PHA02325, PHA02325, hypothetical protein. Length = 72 Score = 25.6 bits (56), Expect = 9.1 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 12/51 (23%) Query: 167 YASGTNPNGSLHDIAG-VINRRGNVLGMMP-----------HPENIIEKFH 205 Y SGT G+ HD+AG V N+ G+ + P + ++KFH Sbjct: 19 YWSGTGKKGNPHDLAGLVCNKLGDDTCINPCKGSDSGVTWEKRLDELDKFH 69 >gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional. Length = 208 Score = 25.6 bits (56), Expect = 9.7 Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 80 IKVMGICNGFQILVE 94 I ++GIC GFQ L+E Sbjct: 74 IPLLGICLGFQALLE 88 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.141 0.421 Gapped Lambda K H 0.267 0.0671 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,651,557 Number of extensions: 232107 Number of successful extensions: 587 Number of sequences better than 10.0: 1 Number of HSP's gapped: 557 Number of HSP's successfully gapped: 55 Length of query: 219 Length of database: 5,994,473 Length adjustment: 90 Effective length of query: 129 Effective length of database: 4,049,753 Effective search space: 522418137 Effective search space used: 522418137 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.1 bits)