RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780971|ref|YP_003065384.1|
phosphoribosylformylglycinamidine synthase subunit I [Candidatus
Liberibacter asiaticus str. psy62]
         (219 letters)



>gnl|CDD|179609 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I;
           Provisional.
          Length = 219

 Score =  389 bits (1002), Expect = e-109
 Identities = 119/218 (54%), Positives = 157/218 (72%), Gaps = 1/218 (0%)

Query: 1   MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60
           MK A++  PG N D DM +A+  ++G  P  VW  +TD+  VD +V+PGGFSYGDYLRCG
Sbjct: 1   MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCG 60

Query: 61  AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120
           AIAA +P+M+A+K+ A++G  V+GICNGFQIL E  LLPG L RN SLKF+C+ V L V 
Sbjct: 61  AIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVE 120

Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180
           N++T FT  Y+  ++I+ P+AH +GNY+ D + L  +E N Q+VFRY    NPNGS++DI
Sbjct: 121 NNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYC-DENPNGSVNDI 179

Query: 181 AGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL 218
           AG++N +GNVLGMMPHPE  +E   G  DG  LF SLL
Sbjct: 180 AGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLL 217


>gnl|CDD|162511 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase
           I.  In some species, phosphoribosylformylglycinamidine
           synthase is composed of a single polypeptide chain. This
           model describes the PurQ protein of Bacillus subtilis
           (where PurL, PurQ, and PurS are required for
           phosphoribosylformylglycinamidine synthase activity) and
           functionally equivalent proteins from other bacteria and
           archaea.
          Length = 227

 Score =  323 bits (829), Expect = 3e-89
 Identities = 118/225 (52%), Positives = 161/225 (71%), Gaps = 8/225 (3%)

Query: 1   MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60
           MK A+++ PG N D D + A+ +++G    +VW  D  +PD D +V+PGGFSYGDYLR G
Sbjct: 1   MKVAVIRFPGTNCDRDTVYAL-RLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAG 59

Query: 61  AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120
           AIAA +P+MQ +++ A++G+ V+GICNGFQILVE  LLPG L+ N SL+F+C+ V L V 
Sbjct: 60  AIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVE 119

Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRY-------ASGTNP 173
           N++T FTK+YK  ++I+ P+AH +G Y+ D + LA +E N+Q+VFRY       A   NP
Sbjct: 120 NADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANP 179

Query: 174 NGSLHDIAGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL 218
           NGS+ +IAG++N RGNVLGMMPHPE   EK  GG DG  LF SL+
Sbjct: 180 NGSVGNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLV 224


>gnl|CDD|179238 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I;
           Provisional.
          Length = 261

 Score =  166 bits (422), Expect = 5e-42
 Identities = 89/227 (39%), Positives = 132/227 (58%), Gaps = 29/227 (12%)

Query: 1   MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTD-----IPDVDLIVIPGGFSYGD 55
           ++ A++++ G N +++ +KA  + +G  P  V  +D       + D D +VIPGGFS GD
Sbjct: 4   IRVAVLRMEGTNCEDETVKAF-RRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGD 62

Query: 56  YLRCGAI-AAR--TPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGI----------L 102
           Y+R GAI AAR    + + I++   +G  ++GICNGFQ+LVEL LLPG           L
Sbjct: 63  YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPGFDEIAEKPEMAL 122

Query: 103 MRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGN-YFIDAKGLAEIEKNN 161
             N S +F C+   L+  N    FTK  K   + + PVAH +G   F + + L  + +N+
Sbjct: 123 TVNESNRFECRPTYLKKENRKCIFTKLLK-KDVFQVPVAHAEGRVVFSEEEILERLIEND 181

Query: 162 QIVFRYA--SGT------NPNGSLHDIAGVINRRGNVLGMMPHPENI 200
           QIVFRY   +G       NPNGS+++IAG+ N +GNV+G+MPHPE  
Sbjct: 182 QIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGNVIGLMPHPERA 228


>gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase,
            clade II.  This model represents a single-molecule form
            of phosphoribosylformylglycinamidine synthase, also
            called FGAM synthase, an enzyme of purine de novo
            biosynthesis. This model represents a second clade of
            these enzymes found in Clostridia, Bifidobacteria and
            Streptococcus species. This enzyme performs the fourth
            step in IMP biosynthesis (the precursor of all purines)
            from PRPP.
          Length = 1239

 Score =  101 bits (252), Expect = 2e-22
 Identities = 73/253 (28%), Positives = 109/253 (43%), Gaps = 41/253 (16%)

Query: 5    IVQIPGLNRDNDMIKAITKIIGQSPILVWQSDT-------------DIPDVDLIVIPGGF 51
            I   PG N + D  KA  K   +  ++++++               +I    ++++PGGF
Sbjct: 982  IPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGF 1041

Query: 52   SYGDYLRCGA--IAA--RTP-VMQAIKKKAQQGIKVMGICNGFQILVELNLLP------- 99
            S GD     A  IAA  R P V  AI     +   ++GICNGFQ LV+  LLP       
Sbjct: 1042 SAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAA 1101

Query: 100  ----GILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLA 155
                  L  N   + V K V   + ++N+ +     +  I   PV+H +G +    + LA
Sbjct: 1102 NETSPTLTYNDINRHVSKIVRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLA 1161

Query: 156  EIEKNNQIVFRYASGT---------NPNGSLHDIAGVINRRGNVLGMMPHPENIIEKFHG 206
            E+ +N QI  +Y             NPNGS   I G+ +  G + G M H E   +    
Sbjct: 1162 ELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITSPDGRIFGKMGHSERYGDGLFK 1221

Query: 207  GIDG---RGLFAS 216
             I G   + LFAS
Sbjct: 1222 NIPGNKDQHLFAS 1234


>gnl|CDD|130796 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase,
            single chain form.  This model represents a
            single-molecule form of phosphoribosylformylglycinamidine
            synthase, also called FGAM synthase, an enzyme of purine
            de novo biosynthesis. This form is found mostly in
            eukaryotes and Proteobacteria. In Bacillus subtilis PurL
            (FGAM synthase II) and PurQ (FGAM synthase I), homologous
            to different parts of this model, perform the equivalent
            function; the unrelated small protein PurS is also
            required and may be a third subunit.
          Length = 1310

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 66/226 (29%), Positives = 93/226 (41%), Gaps = 33/226 (14%)

Query: 2    KTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDL-----IVIPGGFSYGDY 56
            K AI++  G+N D +M  A  +  G     V  SD     V L     +   GGFSYGD 
Sbjct: 1057 KVAILREQGVNGDREMAAAFDRA-GFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDV 1115

Query: 57   LRCG-----AIAARTPV---MQAIKKKAQQGIKVMGICNGFQILVEL-NLLPGI-----L 102
            L  G     +I     +    QA  K+       +G+CNG Q+L  L   +PG       
Sbjct: 1116 LGAGKGWAKSILFNPRLRDQFQAFFKRPDT--FSLGVCNGCQMLSNLLEWIPGTENWPHF 1173

Query: 103  MRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGN-YFIDAKGLAEIEKNN 161
            +RN S +F  +   + V  S +   +       +   VAH +G   F   +  A+ + + 
Sbjct: 1174 VRNNSERFEARVASVRVGESPSIMLRGMA-GSRLPVAVAHGEGYAAFSSPELQAQADASG 1232

Query: 162  QIVFRYASG---------TNPNGSLHDIAGVINRRGNVLGMMPHPE 198
                RY             NPNGS   IAG+ +  G V  MMPHPE
Sbjct: 1233 LAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGRVTIMMPHPE 1278


>gnl|CDD|179999 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase;
            Provisional.
          Length = 1290

 Score = 79.1 bits (196), Expect = 8e-16
 Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 26/181 (14%)

Query: 41   DVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGI------KVMGICNGFQILVE 94
            D   +V  GGFSYGD L  G   A++ +     +   +          +G+CNG Q++  
Sbjct: 1080 DFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSN 1139

Query: 95   LNLL-PGI-----LMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCP--VAHHDGN 146
            L  + PG       +RN S +F  +  L+EV  S + F +    +++   P  VAH +G 
Sbjct: 1140 LKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQESPSIFLQGMAGSRL---PIAVAHGEGR 1196

Query: 147  YFIDAKGLAEIEKNNQIVFRYASGT---------NPNGSLHDIAGVINRRGNVLGMMPHP 197
                   LA +E    +  RY             NPNGS + I G+    G V  MMPHP
Sbjct: 1197 AEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNGSPNGITGLTTADGRVTIMMPHP 1256

Query: 198  E 198
            E
Sbjct: 1257 E 1257


>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
            Provisional.
          Length = 1307

 Score = 72.5 bits (178), Expect = 8e-14
 Identities = 69/234 (29%), Positives = 97/234 (41%), Gaps = 39/234 (16%)

Query: 2    KTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDL-----IVIPGGFSYGDY 56
            K AI++  G N D +M  A     G  P  V  SD     + L     IV  GGFSY D 
Sbjct: 1039 KVAIIREEGSNGDREMAAAFYAA-GFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADV 1097

Query: 57   LR-----CGAIAARTPVMQAIKK-KAQQGIKVMGICNGFQILVELNLLPGI--------- 101
            L       G+I    P++Q  ++   +     +G+CNG Q++  L  +PG          
Sbjct: 1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAG 1157

Query: 102  -------LMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGN-YFIDAKG 153
                    + N S +F C+   + + +S     K  +    +    AH +G  YF D   
Sbjct: 1158 GDPSQPRFVHNESGRFECRFTSVTIEDSPAIMLKGME-GSTLGVWAAHGEGRAYFPDESV 1216

Query: 154  LAEIEKNNQIVFRY--ASGT-------NPNGSLHDIAGVINRRGNVLGMMPHPE 198
            L E+ K+N    RY    G        NPNGS   IA + +  G  L MMPHPE
Sbjct: 1217 LDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDGRHLAMMPHPE 1270


>gnl|CDD|116299 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase
          domain. 
          Length = 158

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 36 DTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQIL 92
          D    D DL+++PGG      L   A+   + + +A+++ A+ G  ++GIC G+Q+L
Sbjct: 2  DALPGDADLVILPGGKPTIQDL---ALLRNSGLDEALREHAEAGGPILGICGGYQML 55


>gnl|CDD|179125 PRK00784, PRK00784, cobyric acid synthase; Provisional.
          Length = 488

 Score = 47.4 bits (114), Expect = 3e-06
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 13/63 (20%)

Query: 35  SDTDIPDVDLIVIPGGFS---YGD--YLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGF 89
               +PD DL+++PG  S     D  +LR            AI+  A++G  V+GIC G+
Sbjct: 284 PGEPLPDADLVILPG--SKNTIADLAWLRESGWDE------AIRAHARRGGPVLGICGGY 335

Query: 90  QIL 92
           Q+L
Sbjct: 336 QML 338


>gnl|CDD|179218 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase; Validated.
          Length = 451

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 28  SPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICN 87
           SP+    +D  +PD D + + GG+     L    +AA T +  +I+  A  G  +   C 
Sbjct: 278 SPL----ADEALPDCDGLYLGGGYP---ELFAAELAANTSMRASIRAAAAAGKPIYAECG 330

Query: 88  GFQILVE 94
           G   L E
Sbjct: 331 GLMYLGE 337


>gnl|CDD|184114 PRK13527, PRK13527, glutamine amidotransferase subunit PdxT;
          Provisional.
          Length = 200

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNG 88
          D+PD D ++IPGG S       G +  R  ++  IK+K ++G+ ++G C G
Sbjct: 40 DLPDCDALIIPGGES----TTIGRLMKREGILDEIKEKIEEGLPILGTCAG 86


>gnl|CDD|183868 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 205

 Score = 37.8 bits (89), Expect = 0.002
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 21/95 (22%)

Query: 19  KAITKIIGQSPILVWQSD-TDIPDVDLIVIPGGFSYGDYLRCGAIAA--RTPVMQAIKKK 75
           KA+ ++ G   ++   SD  +I   D +++PG  ++ D     A+A      + + IK+ 
Sbjct: 17  KALERL-GAEAVIT--SDPEEILAADGVILPGVGAFPD-----AMANLRERGLDEVIKEA 68

Query: 76  AQQGIKVMGICNGFQILVE----------LNLLPG 100
              G  ++GIC G Q+L E          L LLPG
Sbjct: 69  VASGKPLLGICLGMQLLFESSEEFGETEGLGLLPG 103


>gnl|CDD|130450 TIGR01383, not_thiJ, DJ-1 family protein.  This model represents
           the DJ-1 clade of the so-called ThiJ/PfpI family of
           proteins. PfpI, represented by a distinct model, is a
           putative intracellular cysteine protease. DJ-1 is
           described as an oncogene that acts cooperatively with
           H-Ras. Many members of the DJ-1 clade are annotated
           (apparently incorrectly) as ThiJ, a protein of thiamine
           biosynthesis. However, published reports of ThiJ
           activity and identification of a ThiJ/ThiD bifunctional
           protein describe an unrelated locus mapping near ThiM,
           rather than the DJ-1 homolog of E. coli. The ThiJ
           designation for this family may be spurious; the cited
           paper PubMed:8885414 refers to a locus near thiD and
           thiM in E. coli, unlike the gene represented here.
           Current public annotation reflects ThiJ/ThiD
           bifunctional activity, apparently a property of ThiD and
           not of this locus.
          Length = 179

 Score = 36.1 bits (84), Expect = 0.007
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 35  SDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGIC 86
            D D+ + D IV+PGG    + LR         ++  +KK+  +G  V  IC
Sbjct: 57  EDVDLEEFDAIVLPGGMPGAENLR-----NSKLLLNILKKQESKGKLVAAIC 103


>gnl|CDD|184379 PRK13896, PRK13896, cobyrinic acid a,c-diamide synthase;
           Provisional.
          Length = 433

 Score = 36.3 bits (84), Expect = 0.007
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 28  SPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICN 87
           SP+    +   +PD D + +PGG+            A +P +  +  +A  G+ V+G C 
Sbjct: 265 SPV----AGDPLPDCDGVYLPGGYPE----LHADALADSPALDELADRAADGLPVLGECG 316

Query: 88  GFQILVE 94
           G   L E
Sbjct: 317 GLMALAE 323


>gnl|CDD|183869 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 200

 Score = 35.2 bits (82), Expect = 0.013
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 15/77 (19%)

Query: 38  DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE--- 94
           +I D D IV+PG  ++G      A+   +P+   I + A+ G   +GIC G Q+L E   
Sbjct: 35  EILDADGIVLPGVGAFGA-----AMENLSPLRDVILEAARSGKPFLGICLGMQLLFESSE 89

Query: 95  -------LNLLPGILMR 104
                  L L PG ++R
Sbjct: 90  EGGGVRGLGLFPGRVVR 106


>gnl|CDD|129413 TIGR00313, cobQ, cobyric acid synthase CobQ. 
          Length = 475

 Score = 35.2 bits (81), Expect = 0.015
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 36  DTDIPDVDLIVIPGG---FSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQIL 92
           D  +   D ++IPG     +    L+    A      + I   A++G  V+GIC G+Q+L
Sbjct: 279 DDSLTGCDAVIIPGSKSTIADLYALKQSGFA------EEILDFAKEGGIVIGICGGYQML 332


>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 199

 Score = 34.1 bits (79), Expect = 0.031
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 16/78 (20%)

Query: 38  DIPDVDLIVIPGGFSYGDYLRCGAIAA--RTPVMQAIKKKAQQGIKVMGICNGFQILVE- 94
           +I   D +++PG  ++G      A+ +   + + +A+K+  ++   V+GIC G Q+L E 
Sbjct: 34  EIAGADKVILPGVGAFGQ-----AMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES 88

Query: 95  --------LNLLPGILMR 104
                   L L+PG + R
Sbjct: 89  SEEGNVKGLGLIPGDVKR 106


>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF.
          Length = 538

 Score = 33.1 bits (76), Expect = 0.051
 Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 38/198 (19%)

Query: 34  QSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILV 93
           Q+  DI + D ++ PG  ++G  +    +     + +A+++  Q     +GIC G Q+L 
Sbjct: 37  QTPEDILNADRLIFPGVGAFGSAMD---VLNNRGMAEALREYIQNDRPFLGICLGLQLLF 93

Query: 94  E----------LNLLPGILMR-NCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAH 142
           E          L ++PG++ R + S            +  N       K ++++      
Sbjct: 94  ESSEENGPVEGLGVIPGVVGRFDSSNGLRVPH-----IGWNALQIT--KDSELLDGVGGR 146

Query: 143 HDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHPE---- 198
           H   YF+ +      ++N   V    +  N  G    IA V  R+GNV  +  HPE    
Sbjct: 147 H--VYFVHSYRATPSDENKDWV---LATCNYGGEF--IASV--RKGNVHAVQFHPEKSGA 197

Query: 199 ---NIIEKF-HGGIDGRG 212
              +I+ +F         
Sbjct: 198 TGLSILRRFLEPKSSATQ 215


>gnl|CDD|161825 TIGR00337, PyrG, CTP synthase.  CTP synthase is involved in
           pyrimidine ribonucleotide/ribonucleoside metabolism. The
           enzyme catalyzes the reaction L-glutamine + H2O + UTP +
           ATP = CTP + phosphate + ADP + L-glutamate. The enzyme
           exists as a dimer of identical chains that aggregates as
           a tetramer. This gene has been found circa 500 bp 5'
           upstream of enolase in both beta (Nitrosomonas europaea)
           and gamma (E.coli) subdivisions of proteobacterium (FEMS
           Microbiol Lett 1998 Aug 1;165(1):153-7).
          Length = 525

 Score = 33.1 bits (76), Expect = 0.053
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 31  LVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQ 90
           L  +    +  VD I++PGGF        G I        AIK   +  I  +GIC G Q
Sbjct: 333 LEEEGAEFLKGVDGILVPGGFGERGVE--GKI-------LAIKYARENNIPFLGICLGMQ 383

Query: 91  ILV 93
           + V
Sbjct: 384 LAV 386


>gnl|CDD|162331 TIGR01382, PfpI, intracellular protease, PfpI family.  The member
           of this family from Pyrococcus horikoshii has been
           solved to 2 Angstrom resolution. It is an
           ATP-independent intracellular protease that crystallizes
           as a hexameric ring. Cys-101 is proposed as the active
           site residue in a catalytic triad with the adjacent
           His-102 and a Glu residue from an adjacent monomer. A
           member of this family from Bacillus subtilis, GSP18, has
           been shown to be expressed in response to several forms
           of stress. A role in the degradation of small peptides
           has been suggested. A closely related family consists of
           the thiamine biosynthesis protein ThiJ and its homologs.
          Length = 166

 Score = 31.6 bits (72), Expect = 0.14
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 36  DTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVEL 95
           + +  + D +VIPGG +  +YLR          ++ +++  ++G  V  IC+G Q+L+  
Sbjct: 55  EVNPEEYDALVIPGGRA-PEYLR-----LNNKAVRLVREFVEKGKPVAAICHGPQLLISA 108

Query: 96  NLLPG 100
            +L G
Sbjct: 109 GVLRG 113


>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase;
          Validated.
          Length = 476

 Score = 31.2 bits (71), Expect = 0.20
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 17/74 (22%)

Query: 22 TKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQ-GI 80
          TKII ++ I       +I D+D ++IPGG      +  G++         +KK+      
Sbjct: 23 TKIIDENNI------KEIKDLDGLIIPGG----SLVESGSLT------DELKKEILNFDG 66

Query: 81 KVMGICNGFQILVE 94
           ++GIC+GFQIL E
Sbjct: 67 YIIGICSGFQILSE 80


>gnl|CDD|181818 PRK09393, ftrA, transcriptional activator FtrA; Provisional.
          Length = 322

 Score = 31.1 bits (71), Expect = 0.24
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 43  DLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPG 100
           D IVIPG        R        P+++A++    +G ++  IC+G  +L    LL G
Sbjct: 77  DTIVIPG-------WRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDG 127


>gnl|CDD|162563 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase,
           glutamine amidotransferase subunit.  This model
           represents the glutamine amidotransferase subunit (or
           domain, in eukaryotic systems) of imidazole glycerol
           phosphate synthase. This subunit catalyzes step 5 of
           histidine biosynthesis from PRPP. The other subunit, the
           cyclase, catalyzes step 6.
          Length = 196

 Score = 30.8 bits (70), Expect = 0.28
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 32/99 (32%)

Query: 25  IGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKK--------- 75
           +G  P++V  S  +    D +++PG  ++G              M  +++          
Sbjct: 21  VGAEPVVVKDSK-EAELADKLILPGVGAFGA------------AMARLRENGLDLFVELV 67

Query: 76  AQQGIKVMGICNGFQILVE----------LNLLPGILMR 104
            + G  V+GIC G Q+L E          L L+ G +++
Sbjct: 68  VRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVK 106


>gnl|CDD|161846 TIGR00379, cobB, cobyrinic acid a,c-diamide synthase.  This model
           describes cobyrinic acid a,c-diamide synthase, the cobB
           (cbiA in Salmonella) protein of cobalamin biosynthesis.
           It is responsible for the amidation of carboxylic groups
           at positions A and C of either cobyrinic acid or
           hydrogenobrynic acid. NH(2) groups are provided by
           glutamine and one molecule of ATP hydrogenolyzed for
           each amidation.
          Length = 449

 Score = 29.8 bits (67), Expect = 0.50
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 23  KIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKV 82
           +++  SP+     DT++PDVD + I GGF     L    ++    +  +IK    QG+ +
Sbjct: 272 ELVPFSPL----EDTELPDVDAVYIGGGFP---ELFAEELSQNQALRDSIKTFIHQGLPI 324

Query: 83  MGICNGFQILVE 94
            G C G   L +
Sbjct: 325 YGECGGLMYLSQ 336


>gnl|CDD|172505 PRK14004, hisH, imidazole glycerol phosphate synthase subunit
          HisH; Provisional.
          Length = 210

 Score = 29.5 bits (66), Expect = 0.66
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 31 LVWQSD-TDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGF 89
           V+ SD   I +   +++PG    G + +       T +   I K  + G  + GIC GF
Sbjct: 26 FVFTSDPETIENSKALILPGD---GHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGF 82

Query: 90 QILVE 94
          QIL E
Sbjct: 83 QILFE 87


>gnl|CDD|180047 PRK05380, pyrG, CTP synthetase; Validated.
          Length = 533

 Score = 29.2 bits (67), Expect = 0.86
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 13/55 (23%)

Query: 41  DVDLIVIPGGFSYGDYLRC--GAIAARTPVMQAIKKKAQQGIKVMGICNGFQILV 93
            VD I++PGGF  G+  R   G I        AI+   +  I  +GIC G Q+ V
Sbjct: 343 GVDGILVPGGF--GE--RGIEGKIL-------AIRYARENNIPFLGICLGMQLAV 386


>gnl|CDD|177961 PLN02327, PLN02327, CTP synthase.
          Length = 557

 Score = 28.5 bits (64), Expect = 1.3
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 41  DVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILV 93
             D I++PGGF  GD    G I A        K   +  +  +GIC G QI V
Sbjct: 362 GADGILVPGGF--GDRGVEGKILA-------AKYARENKVPYLGICLGMQIAV 405


>gnl|CDD|131124 TIGR02069, cyanophycinase, cyanophycinase.  This model describes
           both cytosolic and extracellular cyanophycinases. The
           former are part of a system in many Cyanobacteria and a
           few other species of generating and later utilizing a
           storage polymer for nitrogen, carbon, and energy, called
           cyanophycin. The latter are found in species such as
           Pseudomonas anguilliseptica that can use external
           cyanophycin. The polymer has a backbone of L-aspartic
           acid, with most Asp side chain carboxyl groups attached
           to L-arginine.
          Length = 250

 Score = 28.1 bits (63), Expect = 2.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 51  FSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNG 88
           F+ GD LR  ++   TP++  ++K+  +GI + G   G
Sbjct: 88  FTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAG 125


>gnl|CDD|116336 pfam07722, Peptidase_C26, Peptidase C26.  These peptidases have
           gamma-glutamyl hydrolase activity; that is they catalyse
           the cleavage of the gamma-glutamyl bond in
           poly-gamma-glutamyl substrates. They are structurally
           related to pfam00117, but contain extensions in four
           loops and at the C terminus.
          Length = 219

 Score = 27.6 bits (62), Expect = 2.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 72  IKKKAQQGIKVMGICNGFQIL 92
           I+   ++G  ++GIC G Q+L
Sbjct: 99  IRAALERGKPILGICRGMQLL 119


>gnl|CDD|116082 pfam07461, NADase_NGA, Nicotine adenine dinucleotide glycohydrolase
           (NADase).  This family consists of several bacterial
           nicotine adenine dinucleotide glycohydrolase (NGA)
           proteins which appear to be specific to Streptococcus
           pyogenes. NAD glycohydrolase (NADase) is a potential
           virulence factor. Streptococcal NADase may contribute to
           virulence by its ability to cleave beta-NAD at the
           ribose-nicotinamide bond, depleting intracellular NAD
           pools and producing the potent vasoactive compound
           nicotinamide.
          Length = 446

 Score = 27.8 bits (61), Expect = 2.4
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 66  TPVMQAIKKKAQQGIKVMGICNGFQILV-ELNLLPGILMRNCSLKFVCKQVL--LEVVNS 122
           T VM+A    +++   VM   +G    V E N   G +    S KF     +  + +VN 
Sbjct: 53  TKVMEANATSSKEDNHVMHTLDGSMSTVWEENSPGGGVGEVLSYKFASPMHIGRILIVNG 112

Query: 123 NTAFTKSY-KMNQIIKCPVAHHDGNYFI 149
           +T+  ++Y K N+I K  V +++GN  +
Sbjct: 113 DTSSKENYYKKNRIAKADVKYYNGNKLV 140


>gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 209

 Score = 27.4 bits (62), Expect = 2.6
 Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 36/88 (40%)

Query: 37  TDIPDV----DLIVIPGGFSYGDYLRCGAIAARTPVMQAIKK----------KAQQGIKV 82
           T  PD     D +V+PG          GA A     M+ ++               G   
Sbjct: 33  TADPDAVAAADRVVLPG---------VGAFAD---CMRGLRAVGLGEAVIEAVLAAGRPF 80

Query: 83  MGICNGFQILVE----------LNLLPG 100
           +GIC G Q+L E          L L+PG
Sbjct: 81  LGICVGMQLLFERGLEHGDTPGLGLIPG 108


>gnl|CDD|163512 TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate synthase,
          glutaminase subunit Pdx2.  Pyridoxal 5'-phosphate (PLP)
          is synthesized by the PdxA/PdxJ pathway in some species
          (mostly within the gamma subdivision of the
          proteobacteria) and by the Pdx1/Pdx2 pathway in most
          other organisms. This family describes Pdx2, the
          glutaminase subunit of the PLP synthase.
          Length = 184

 Score = 27.4 bits (61), Expect = 2.7
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQIL 92
           + ++D ++IPGG S         +  +  + + ++     G+ V G C G  +L
Sbjct: 33 QLDEIDGLIIPGGES----TTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIML 83


>gnl|CDD|177981 PLN02347, PLN02347, GMP synthetase.
          Length = 536

 Score = 27.3 bits (61), Expect = 2.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 76  AQQGIKVMGICNGFQILVEL 95
            ++G+ V+GIC G Q++V+ 
Sbjct: 83  RERGVPVLGICYGMQLIVQK 102


>gnl|CDD|162663 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
            This model represents the
           S-adenosylmethionine-dependent O-methyltransferase
           responsible for methylation of magnesium protoporphyrin
           IX. This step is essentiasl for the biosynthesis of both
           chlorophyll and bacteriochlorophyll. This model
           encompasses two closely related clades, from
           cyanobacteria (and plants) where it is called ChlM and
           other photosynthetic bacteria where it is known as BchM.
          Length = 219

 Score = 27.5 bits (61), Expect = 2.9
 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 5/70 (7%)

Query: 147 YFIDAKGLAEIEK-----NNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHPENII 201
           ++  +     +         +++F +A  T     L  I  +            HP   +
Sbjct: 131 HYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDL 190

Query: 202 EKFHGGIDGR 211
           E+  G +  +
Sbjct: 191 ERALGELGWK 200


>gnl|CDD|183597 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit;
           Reviewed.
          Length = 360

 Score = 26.6 bits (60), Expect = 5.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 68  VMQAIKKKAQQGIKVMGICNGFQIL 92
            ++ I++  ++ I + GIC G Q+L
Sbjct: 237 AIEMIRELLEKKIPIFGICLGHQLL 261


>gnl|CDD|184112 PRK13525, PRK13525, glutamine amidotransferase subunit PdxT;
          Provisional.
          Length = 189

 Score = 26.7 bits (60), Expect = 5.6
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNG 88
          D+ ++D +++PGG S       G +     +++ +++    G+ V G C G
Sbjct: 35 DLDEIDGLILPGGES----TTMGKLLRDFGLLEPLREFIASGLPVFGTCAG 81


>gnl|CDD|171871 PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 192

 Score = 26.3 bits (58), Expect = 5.8
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 28/81 (34%)

Query: 36  DTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGI-------KVMGICNG 88
              I   + I++PG   + D             M  IK+     I       K++GIC G
Sbjct: 32  SKIIDQAETIILPGVGHFKD------------AMSEIKRLNLNAILAKNTDKKMIGICLG 79

Query: 89  FQILVE---------LNLLPG 100
            Q++ E         L  +PG
Sbjct: 80  MQLMYEHSDEGDASGLGFIPG 100


>gnl|CDD|178980 PRK00331, PRK00331, glucosamine--fructose-6-phosphate
           aminotransferase; Reviewed.
          Length = 604

 Score = 26.2 bits (59), Expect = 6.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 69  MQAIKKKAQQGIKVMGICN 87
           + A++   + G K + ICN
Sbjct: 353 LAALRLAKELGAKTLAICN 371


>gnl|CDD|179857 PRK04517, PRK04517, hypothetical protein; Provisional.
          Length = 216

 Score = 26.0 bits (57), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 144 DGNYFIDAKGLAEIEKNNQIVFRYA 168
            G +F   K L   +  NQIVFRY+
Sbjct: 44  SGGFFASTKTLELPDGENQIVFRYS 68


>gnl|CDD|183835 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
          Length = 1146

 Score = 26.3 bits (59), Expect = 7.4
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 6/29 (20%)

Query: 187 RG-NVLGMMPHPENIIEKF-----HGGID 209
           RG N +G   +P+N++  F       GID
Sbjct: 614 RGSNAVGYTNYPDNVVRAFVREAAAAGID 642


>gnl|CDD|178842 PRK00074, guaA, GMP synthase; Reviewed.
          Length = 511

 Score = 25.8 bits (58), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 79 GIKVMGICNGFQILVE 94
          G+ V+GIC G Q++  
Sbjct: 75 GVPVLGICYGMQLMAH 90


>gnl|CDD|177360 PHA02325, PHA02325, hypothetical protein.
          Length = 72

 Score = 25.6 bits (56), Expect = 9.1
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 12/51 (23%)

Query: 167 YASGTNPNGSLHDIAG-VINRRGNVLGMMP-----------HPENIIEKFH 205
           Y SGT   G+ HD+AG V N+ G+   + P              + ++KFH
Sbjct: 19  YWSGTGKKGNPHDLAGLVCNKLGDDTCINPCKGSDSGVTWEKRLDELDKFH 69


>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II;
          Provisional.
          Length = 208

 Score = 25.6 bits (56), Expect = 9.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 80 IKVMGICNGFQILVE 94
          I ++GIC GFQ L+E
Sbjct: 74 IPLLGICLGFQALLE 88


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.141    0.421 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,651,557
Number of extensions: 232107
Number of successful extensions: 587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 55
Length of query: 219
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,049,753
Effective search space: 522418137
Effective search space used: 522418137
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)