RPSBLAST alignment of GI: 254780971 and protein with PDBid: 3fij
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Length = 254
Score = 41.4 bits (96), Expect = 1e-04
Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 33/222 (14%)
Query: 15 NDMIKAITKIIGQSPILVWQSDTDIPD-----VDLIVIPGGFSYGDYLRCGAIAARTPV- 68
+ AI K+ G PI + D VD +++ GG L +
Sbjct: 31 QRYVDAIQKV-GGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAY 89
Query: 69 --------MQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120
+ ++ G + IC G Q++ +L QV + +
Sbjct: 90 FPPRDSYEIALVRAALDAGKPIFAICRGMQLVNV--------ALGGTLYQDISQVETKAL 141
Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHD- 179
+ + I P + ++ ++Q + + A D
Sbjct: 142 QHLQRVDEQLGSHTIDIEPTSELAKHHPNKKL---VNSLHHQFIKKLAPSFKVTARTADG 198
Query: 180 -IAGVI--NRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL 218
I V N LG+ HPE + F + LF +L+
Sbjct: 199 MIEAVEGDNLPSWYLGVQWHPELM---FQTDPESEQLFQALV 237