BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780971|ref|YP_003065384.1|
phosphoribosylformylglycinamidine synthase subunit I [Candidatus
Liberibacter asiaticus str. psy62]
         (219 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 219

 Score =  450 bits (1157), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60
           MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG
Sbjct: 1   MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60

Query: 61  AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120
           AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV
Sbjct: 61  AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120

Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180
           NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI
Sbjct: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180

Query: 181 AGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLLT 219
           AGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLLT
Sbjct: 181 AGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLLT 219


>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 544

 Score = 25.8 bits (55), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 9/49 (18%)

Query: 45  IVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILV 93
           I++PGGF  G     G IAA       IK   +  I  +GIC G Q+ V
Sbjct: 350 ILVPGGF--GKRGSEGKIAA-------IKFARENKIPFLGICFGMQMAV 389


>gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 444

 Score = 24.3 bits (51), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 62  IAARTPVMQAIKKKAQQGIKVM 83
           IAA  P ++ +KK+ +QG KV+
Sbjct: 99  IAATVPSLENLKKEGEQGRKVI 120


>537021.9.peg.472_1 
          Length = 369

 Score = 23.9 bits (50), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 166 RYASGTNPNGSLHDIA 181
           +Y SG NP+  LHD+A
Sbjct: 258 QYDSGVNPSVILHDLA 273


>gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate synthase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 243

 Score = 23.1 bits (48), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 25  IGQSPILVWQSDTDIPDVDLIVIPGG 50
           +  S I  +   +D+PD DLI+  GG
Sbjct: 165 VDSSLIAKYLDTSDVPDPDLIIRTGG 190


>gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 517

 Score = 21.9 bits (45), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 143 HDGNYFIDAKG 153
           H GN F+D+KG
Sbjct: 289 HPGNLFVDSKG 299


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.141    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,410
Number of Sequences: 1233
Number of extensions: 6136
Number of successful extensions: 14
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 219
length of database: 328,796
effective HSP length: 71
effective length of query: 148
effective length of database: 241,253
effective search space: 35705444
effective search space used: 35705444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)