RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780972|ref|YP_003065385.1|
phosphoribosylformylglycinamidine synthase, PurS protein [Candidatus
Liberibacter asiaticus str. psy62]
         (84 letters)



>gnl|CDD|180332 PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase
          subunit PurS; Reviewed.
          Length = 80

 Score =  105 bits (265), Expect = 2e-24
 Identities = 37/80 (46%), Positives = 58/80 (72%)

Query: 2  IKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELES 61
           K  V V LK+ VLDPQG+A+K AL ++G+  +  +RQGK F++E++    + AE +L+ 
Sbjct: 1  YKVKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGKYFELELEGESEEKAEADLKE 60

Query: 62 ICQNLLANPVIEDYDIKVQK 81
          +C+ LLANPVIEDY I++++
Sbjct: 61 MCEKLLANPVIEDYRIEIEE 80


>gnl|CDD|129402 TIGR00302, TIGR00302, phosphoribosylformylglycinamidine synthase,
          purS protein.  In species such as Bacillus subtilis in
          which FGAM synthetase is split into two ORFs purL and
          purQ, this small protein, previously called yexA, is
          required for FGAM synthetase activity. Although the
          article does not make it clear whether this is a
          subunit or an accessory protein, it is encoded as part
          of the operon, which suggests stochiometric amounts, =
          subunit.
          Length = 80

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 32/79 (40%), Positives = 56/79 (70%)

Query: 3  KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
          K  V ++LKK VLDP+G A++ AL+ +G++ +  +R GK+ ++ ++    +  E E+E +
Sbjct: 2  KVEVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTGKVIELTIEADSEEAVEREVEEM 61

Query: 63 CQNLLANPVIEDYDIKVQK 81
          C+ LLANPVI DYDI++++
Sbjct: 62 CEKLLANPVIHDYDIEIEE 80


>gnl|CDD|102368 PRK06423, PRK06423, phosphoribosylformylglycinamidine synthase;
          Provisional.
          Length = 73

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 2  IKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELES 61
          +K  V V  K  V DP+   +   L+ +G++ I  +   K++  + D         E++ 
Sbjct: 1  MKFKVEVTYKPGVEDPEALTILKNLNILGYNGIKGVSISKVYYFDADS------YNEVDE 54

Query: 62 ICQNLLANPVIEDYDI 77
          I   +L NPVI  Y I
Sbjct: 55 IAGKILTNPVIHSYKI 70


>gnl|CDD|151809 pfam11369, DUF3160, Protein of unknown function (DUF3160).  This
          family of proteins has no known function.
          Length = 637

 Score = 27.8 bits (62), Expect = 0.64
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 42 IFDIEMDETLSDIAEEE----LESICQNLLANPVIEDYD 76
          ++ I+ DETL  + EEE    L  + + LL N  IEDY+
Sbjct: 53 LYHIQFDETLRQLEEEEFYPALWKLDKALL-NASIEDYN 90


>gnl|CDD|162633 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G.  This model
           represents the G subunit (one of 14: A->N) of the
           NADH-quinone oxidoreductase complex I which generally
           couples NADH and ubiquinone oxidation/reduction in
           bacteria and mammalian mitochondria while translocating
           protons, but may act on NADPH and/or plastoquinone in
           cyanobacteria and plant chloroplasts. This model
           excludes related subunits from formate dehydrogenase
           complexes.
          Length = 603

 Score = 26.9 bits (60), Expect = 1.3
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 9   KLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDI--EMDETLSDIAEEELESICQNL 66
           +L+K V        K AL  I   N+       +        + L DIA      I   L
Sbjct: 383 RLRKAVK---KGGAKVALIGIEKWNLTYPANTNLVFHPGLSPKKLDDIASGAHSDIAAAL 439

Query: 67  LA--NPVI 72
            A   P+I
Sbjct: 440 KAAKKPLI 447


>gnl|CDD|181739 PRK09266, PRK09266, hypothetical protein; Provisional.
          Length = 266

 Score = 26.1 bits (58), Expect = 2.1
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 13  DVL--DPQGKALKTALSNIGFH 32
           D L  DP G+  + A  N+GF 
Sbjct: 155 DALFVDPDGRVSEGATWNLGFW 176


>gnl|CDD|131395 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
           Members of this family, all eukaryotic, are part of the
           group II chaperonin complex called CCT (chaperonin
           containing TCP-1) or TRiC. The archaeal equivalent group
           II chaperonin is often called the thermosome. Both are
           somewhat related to the group I chaperonin of bacterial,
           GroEL/GroES. This family consists exclusively of the CCT
           delta chain (part of a paralogous family) from animals,
           plants, fungi, and other eukaryotes.
          Length = 517

 Score = 25.1 bits (55), Expect = 4.3
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 12/71 (16%)

Query: 4   ANVVVKLKK---DVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
            N+V K+KK   +VL  Q   L+ A++++  H + ++   KI  ++      DI  EE+E
Sbjct: 263 LNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKM---KIMVVK------DIEREEVE 313

Query: 61  SICQNLLANPV 71
            IC+ +   P+
Sbjct: 314 FICKTIGCKPI 324


>gnl|CDD|149696 pfam08718, GLTP, Glycolipid transfer protein (GLTP).  GLTP is a
          cytosolic protein that catalyses the intermembrane
          transfer of glycolipids.
          Length = 148

 Score = 24.5 bits (54), Expect = 6.5
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 14 VLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE--------SICQN 65
          + D  G A      +I   NI ++ +    D E  +TL D+  +E E        S  + 
Sbjct: 18 LFDKLGTAFSFVKKDIV-GNITKLEKRYESDPEKYKTLQDLVLKEKENGLAKKKNSGTRG 76

Query: 66 LL 67
          LL
Sbjct: 77 LL 78


>gnl|CDD|180486 PRK06246, PRK06246, fumarate hydratase; Provisional.
          Length = 280

 Score = 24.4 bits (54), Expect = 6.9
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%)

Query: 2  IKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELES 61
          I+AN    L  DV +   KA +   S IG   +  I       +E  E    IA+EE   
Sbjct: 18 IEANYY--LPDDVKEALKKAYEKEESPIGKEILKAI-------LENAE----IAKEEQVP 64

Query: 62 ICQ 64
          +CQ
Sbjct: 65 LCQ 67


>gnl|CDD|129062 smart00829, PKS_ER, Enoylreductase.  Enoylreductase in Polyketide
           synthases.
          Length = 288

 Score = 24.3 bits (54), Expect = 8.0
 Identities = 5/25 (20%), Positives = 12/25 (48%)

Query: 11  KKDVLDPQGKALKTALSNIGFHNIN 35
           K+D+ D     +     N+ +H ++
Sbjct: 206 KRDIRDNSQLGMAPFRRNVSYHAVD 230


>gnl|CDD|183643 PRK12642, flgF, flagellar basal body rod protein FlgF; Reviewed.
          Length = 241

 Score = 23.9 bits (52), Expect = 9.4
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 14  VLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETL 51
            L+P G           + N  Q+    +F+I+ D  L
Sbjct: 128 QLNPGGGEPTIGADGAIYQNGVQVGAIGLFEIDADAGL 165


>gnl|CDD|178591 PLN03017, PLN03017, trehalose-phosphatase.
          Length = 366

 Score = 23.8 bits (51), Expect = 9.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 18  QGKALKTALSNIGFHNINQIRQGKIFDIEMDE 49
           +GKAL+  L ++GF N N +    I D   DE
Sbjct: 284 KGKALEFLLESLGFGNTNNVFPVYIGDDRTDE 315


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.132    0.349 

Gapped
Lambda     K      H
   0.267   0.0761    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,324,363
Number of extensions: 71940
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 30
Length of query: 84
Length of database: 5,994,473
Length adjustment: 53
Effective length of query: 31
Effective length of database: 4,849,249
Effective search space: 150326719
Effective search space used: 150326719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.0 bits)