RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780972|ref|YP_003065385.1|
phosphoribosylformylglycinamidine synthase, PurS protein [Candidatus
Liberibacter asiaticus str. psy62]
         (84 letters)



>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA,
          national project on protein structural and functional
          analyses; 2.30A {Methanocaldococcus jannaschii} (A:)
          Length = 83

 Score =  100 bits (250), Expect = 1e-22
 Identities = 38/81 (46%), Positives = 61/81 (75%)

Query: 1  MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
          M KA V++KLKK VL+P+G+ ++ AL+ +GF+N+ +++  K+ DI M+    +  +EE+E
Sbjct: 1  MYKATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTYKMIDIIMEGENEEKVKEEVE 60

Query: 61 SICQNLLANPVIEDYDIKVQK 81
           +C+ LLANPVI DY+IKV+K
Sbjct: 61 EMCKKLLANPVIHDYEIKVEK 81


>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS subunit;
          TM1244, PURS subunit (EC 6.3.5.3), structural genomics;
          1.90A {Thermotoga maritima MSB8} (A:)
          Length = 94

 Score = 99.3 bits (248), Expect = 2e-22
 Identities = 21/79 (26%), Positives = 45/79 (56%)

Query: 1  MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
          + K  + V+ + +V DP+G+ ++  L       + ++R GK   +E++    + A E ++
Sbjct: 15 LFKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEIVK 74

Query: 61 SICQNLLANPVIEDYDIKV 79
            C+ LL NPV+E+Y+++ 
Sbjct: 75 KACEELLVNPVVEEYEVRE 93


>2zw2_A Putative uncharacterized protein STS178; purine
          metabolism, ligase; 1.55A {Sulfolobus tokodaii} (A:)
          Length = 92

 Score = 98.1 bits (245), Expect = 3e-22
 Identities = 15/82 (18%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 1  MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
          + +  +++  K+ V DP+G+ ++  + +     I + R GK     ++ +    A E ++
Sbjct: 5  LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGKYLVFRVNSSSQQEATELVK 64

Query: 61 SICQNL-LANPVIEDYDIKVQK 81
           +   + L NP++   +I+  +
Sbjct: 65 KLADEMRLYNPIVHKIEIRANR 86


>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis
          pathway, PSI, protein structure initiative, NESG; 2.56A
          {Methanobacterium thermoautotrophicum} (A:)
          Length = 85

 Score = 95.0 bits (237), Expect = 3e-21
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 4  ANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESIC 63
            V ++LKK  L+P+   ++ AL+ +G+  +       +     DE   +  E E+E  C
Sbjct: 5  VEVRIRLKKGXLNPEAATIERALALLGY-EVEDTDTTDVITFTXDEDSLEAVEREVEDXC 63

Query: 64 QNLLANPVIEDYDIKVQKSSS 84
          Q LL NPVI DYD+ + + SS
Sbjct: 64 QRLLCNPVIHDYDVSINEXSS 84


>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase,
          FGAR, FGAM, structural protein; 2.00A {Bacillus
          subtilis} (A:)
          Length = 84

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 3  KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
          K  V V LK+ VLDPQG A++ AL +  ++ +  +R GK  ++ ++++     +  ++  
Sbjct: 3  KVKVYVSLKESVLDPQGSAVQHALHSXTYNEVQDVRIGKYXELTIEKS-DRDLDVLVKEX 61

Query: 63 CQNLLANPVIEDYDIKVQK 81
          C+ LLAN VIEDY  +V++
Sbjct: 62 CEKLLANTVIEDYRYEVEE 80


>2dgb_A Hypothetical protein PURS; purine, structural genomics,
          NPPSFA, national project on protein structural and
          functional analyses; 2.10A {Thermus thermophilus} PDB:
          2cuw_A (A:)
          Length = 84

 Score = 86.9 bits (216), Expect = 9e-19
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 3  KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
          +A ++++LKK +LDPQG+A++  L ++G   + ++R GK+ +I         A EE    
Sbjct: 5  QATLLIELKKGILDPQGRAVEGVLKDLGH-PVEEVRVGKVLEIVFPAENLLEA-EEKAKA 62

Query: 63 CQNLLANPVIEDYDIKVQK 81
             LLANPV E Y ++  K
Sbjct: 63 XGALLANPVXEVYALEALK 81


>2ecy_A TNF receptor-associated factor 3; metal binding protein,
          structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
          Length = 66

 Score = 26.5 bits (58), Expect = 1.3
 Identities = 3/25 (12%), Positives = 9/25 (36%)

Query: 48 DETLSDIAEEELESICQNLLANPVI 72
             +  + ++     C  +L +P  
Sbjct: 6  SGFVKTVEDKYKCEKCHLVLCSPKQ 30


>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
          tripartite motif protein 34, interferon- responsive
          finger protein 1; NMR {Homo sapiens} (A:)
          Length = 79

 Score = 25.8 bits (56), Expect = 2.0
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 48 DETLSDIAEEELESICQNLLANPVI 72
            +  ++ EE    IC  LL  P+ 
Sbjct: 3  SGSSGNVQEEVTCPICLELLTEPLS 27


>2ysj_A Tripartite motif-containing protein 31; ring-type zinc
          finger domain, structural genomics, NPPSFA; NMR {Homo
          sapiens} (A:)
          Length = 63

 Score = 25.8 bits (56), Expect = 2.0
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72
             + ++ + EE +  IC ++L  PV 
Sbjct: 9  ASGQFVNKLQEEVICPICLDILQKPVT 35


>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring
          domain, zinc-binding domain, structural genomics,
          NPPSFA; NMR {Homo sapiens} (A:)
          Length = 58

 Score = 25.8 bits (56), Expect = 2.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 49 ETLSDIAEEELESICQNLLANPVI 72
            L ++  E   S+C   L  PVI
Sbjct: 7  GALENLQVEASCSVCLEYLKEPVI 30


>3l0i_A DRRA, SIDM; GEF/GDF-RAB complex, GTP-binding,
           guanine-nucleotide exchange factor, GDI-displacement
           factor; 2.85A {Legionella pneumophila} (A:205-363)
          Length = 159

 Score = 25.5 bits (55), Expect = 2.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 7   VVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
           + +  KDV DP  K        I  HN   +   KI  I+  E  +++ +E LES+
Sbjct: 80  IXQFIKDVADPTSK--------IWXHNTKALXNHKIAAIQKLERSNNVNDETLESV 127


>2ecw_A Tripartite motif-containing protein 30; metal binding
          protein, structural genomics, NPPSFA; NMR {Mus
          musculus} (A:)
          Length = 85

 Score = 25.4 bits (55), Expect = 2.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)

Query: 48 DETLSDIAEEELESICQNLLANPVI 72
             L  I EE    IC  LL  PV 
Sbjct: 10 SSVLEMIKEEVTCPICLELLKEPVS 34


>3hct_A TNF receptor-associated factor 6; cross-brace,
          beta-BETA-alpha, coiled coil, cytoplasm, metal-
          binding, UBL conjugation, UBL conjugation pathway;
          2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A (A:)
          Length = 118

 Score = 25.2 bits (54), Expect = 3.2
 Identities = 7/28 (25%), Positives = 8/28 (28%), Gaps = 1/28 (3%)

Query: 46 EMDETLSDIAEEELE-SICQNLLANPVI 72
            D       E + E  IC   L   V 
Sbjct: 6  GYDVEFDPPLESKYECPICLMALREAVQ 33


>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
          structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
          Length = 72

 Score = 25.4 bits (55), Expect = 3.2
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 48 DETLSDIAEEELESICQNLLANPVI 72
             LS++    L SIC+  L +   
Sbjct: 6  SGNLSELTPYILCSICKGYLIDATT 30


>2ecv_A Tripartite motif-containing protein 5; metal binding
          protein, structural genomics, NPPSFA; NMR {Homo
          sapiens} (A:)
          Length = 85

 Score = 25.0 bits (54), Expect = 3.2
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 48 DETLSDIAEEELESICQNLLANPVI 72
             L ++ EE    IC  LL  P+ 
Sbjct: 10 SGILVNVKEEVTCPICLELLTQPLS 34


>3l0m_A DRRA, SIDM; GEF/GDF of RAB1, A NEW novel
           phosphatidylinositol 4- phosphate-binding domain; 3.45A
           {Legionella pneumophila} (A:1-231)
          Length = 231

 Score = 25.1 bits (54), Expect = 3.4
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 7   VVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
           + +  KDV DP  K        I  HN   +   KI  I+  E  +++ +E LES+
Sbjct: 160 IXQFIKDVADPTSK--------IWXHNTKALXNHKIAAIQKLERSNNVNDETLESV 207


>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3
          ligase, UBL conjugation pathway; NMR {Mus musculus}
          (A:)
          Length = 85

 Score = 25.0 bits (54), Expect = 3.6
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 48 DETLSDIAEEELESICQNLLANPVI 72
          +   SD  +E  + +   L+ +PV 
Sbjct: 5  EIDYSDAPDEFRDPLMDTLMTDPVR 29


>2csy_A Zinc finger protein 183-like 1; ring finger protein 161,
          ring domain, structural genomics, NPPSFA; NMR {Homo
          sapiens} (A:)
          Length = 81

 Score = 25.0 bits (54), Expect = 3.7
 Identities = 5/26 (19%), Positives = 8/26 (30%)

Query: 47 MDETLSDIAEEELESICQNLLANPVI 72
                +        IC+    NPV+
Sbjct: 5  SSGGSEEEEIPFRCFICRQAFQNPVV 30


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 24.7 bits (53), Expect = 4.1
 Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 8/32 (25%)

Query: 50  TLSDIAEEELESICQNLLANPVIEDYDIKVQK 81
           T S+     +E   +    N       I+++ 
Sbjct: 300 TFSE----RVEKYAERFAPNANE----IRLKT 323


>1t0h_B Voltage-gated calcium channel subunit BETA2A; SH3 domain,
           nucleotide kinase like domain, signaling protein; 1.97A
           {Rattus norvegicus} (B:)
          Length = 224

 Score = 25.0 bits (54), Expect = 4.1
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 6   VVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELES 61
           V+ +L K     Q K L   +  +    + Q    + FD+ +DE   + A E L  
Sbjct: 147 VLQRLIKSRGKSQAKHLN--VQXVAADKLAQCPPQESFDVILDENQLEDACEHLAD 200


>2ysl_A Tripartite motif-containing protein 31; ring-type zinc
          finger domain, structural genomics, NPPSFA; NMR {Homo
          sapiens} (A:)
          Length = 73

 Score = 25.0 bits (54), Expect = 4.2
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72
             + ++ + EE +  IC ++L  PV 
Sbjct: 9  ASGQFVNKLQEEVICPICLDILQKPVT 35


>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3
          ubiquitin ligase, E4 polyubiquitin chain elongation
          factor, alternative splicing, cytoplasm; NMR {Homo
          sapiens} (A:)
          Length = 100

 Score = 24.7 bits (53), Expect = 4.4
 Identities = 6/39 (15%), Positives = 16/39 (41%)

Query: 34 INQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVI 72
            ++ +    +   +   SD  +E  + +   L+ +PV 
Sbjct: 6  AEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVR 44


>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural
          genomics, NPPSFA, national project on protein
          structural and functional analyses; NMR {Homo sapiens}
          (A:)
          Length = 94

 Score = 24.7 bits (53), Expect = 4.7
 Identities = 4/21 (19%), Positives = 7/21 (33%)

Query: 52 SDIAEEELESICQNLLANPVI 72
          S  +      I +  +  PV 
Sbjct: 2  SSGSSGFTCPITKEEMKKPVK 22


>1t1h_A Gspef-atpub14, armadillo repeat containing protein;
          ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis
          thaliana} (A:1-52)
          Length = 52

 Score = 24.5 bits (53), Expect = 4.7
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 52 SDIAEEELESICQNLLANPVI 72
           +  E     I   L+ +PVI
Sbjct: 3  PEFPEYFRCPISLELMKDPVI 23


>2wwx_B DRRA, SIDM; golgi apparatus, protein transport, ER-golgi
           transport, endoplasmic reticulum, prenylation,
           lipoprotein, GTP-binding; 1.50A {Legionella pneumophila}
           (B:)
          Length = 217

 Score = 24.7 bits (53), Expect = 4.7
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 7   VVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
           +++  KDV DP  K        I  HN   +   KI  I+  E  +++ +E LES+
Sbjct: 155 IMQFIKDVADPTSK--------IWMHNTKALMNHKIAAIQKLERSNNVNDETLESV 202


>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme,
          KIAA0126, structural genomics, riken structural
          genomics/proteomics initiative, RSGI; NMR {Homo
          sapiens} (A:)
          Length = 98

 Score = 24.7 bits (53), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 48 DETLSDIAEEELESICQNLLANPVI 72
          +ET +D  +E L+ I   L+ +PV+
Sbjct: 13 EETYADACDEFLDPIMSTLMCDPVV 37


>2ckl_A Polycomb group ring finger protein 4; BMI1, zinc, RING1B,
          polycomb, E3-ligase, nuclear protein, chromosomal
          protein, transcription regulation; 2.0A {Mus musculus}
          PDB: 2h0d_A (A:1-84)
          Length = 84

 Score = 24.6 bits (53), Expect = 5.5
 Identities = 1/27 (3%), Positives = 8/27 (29%)

Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72
               ++++    +  +C     +   
Sbjct: 4  TTRIKITELNPHLMCVLCGGYFIDATT 30


>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl
          kinase, amino-acid biosynthesis, transferase, feedback
          regulation, PUA domain; HET: RGP; 2.5A {Escherichia
          coli} PDB: 2j5t_A* (A:267-367)
          Length = 101

 Score = 24.4 bits (53), Expect = 6.1
 Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 14 VLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEEL 59
          + + +G+ +   +S      + +I      +I+    L        
Sbjct: 49 ICNLEGRDIAHGVSRYNSDALRRIAGHHSQEID--AILGYEYGPVA 92


>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular
          protein of testis, proliferation potential-related
          protein, protein P2P-R; NMR {Homo sapiens} (A:)
          Length = 74

 Score = 24.2 bits (52), Expect = 6.5
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 48 DETLSDIAEEELESICQNLLANPVI 72
                I +E L  IC++++ + V+
Sbjct: 6  SGEDDPIPDELLCLICKDIMTDAVV 30


>3hcs_A TNF receptor-associated factor 6; cross-brace,
          beta-BETA-alpha, coiled coil, cytoplasm, metal-
          binding, UBL conjugation, UBL conjugation pathway;
          2.20A {Homo sapiens} (A:1-79)
          Length = 79

 Score = 24.2 bits (52), Expect = 7.2
 Identities = 5/25 (20%), Positives = 7/25 (28%)

Query: 48 DETLSDIAEEELESICQNLLANPVI 72
           E    +  +    IC   L   V 
Sbjct: 9  VEFDPPLESKYECPICLMALREAVQ 33


>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring
          finger, zinc-binding protein, heterodimer, ubiquitin
          ligase, antitumor; NMR {Homo sapiens} (B:)
          Length = 117

 Score = 24.0 bits (51), Expect = 7.4
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 49 ETLSDIAEEELESICQNLLANPVI 72
            L  + +    S C N+L  PV 
Sbjct: 14 AALDRLEKLLRCSRCTNILREPVC 37


>3eb5_A Baculoviral IAP repeat-containing protein 3; ring domain,
          apoptosis, chromosomal rearrangement, cytoplasm,
          metal-binding, polymorphism, zinc; 2.00A {Homo sapiens}
          PDB: 3eb6_A (A:)
          Length = 74

 Score = 23.9 bits (51), Expect = 8.4
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 44 DIEMDETLSDIAEEELESICQNLLANPVI 72
          D+ ++E L  + EE    +C +   + V 
Sbjct: 11 DLPVEEQLRRLQEERTCKVCMDKEVSIVF 39


>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
          splicing, apoptosis, cytoplasm, metal-binding, UBL
          conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
          (A:1-103)
          Length = 103

 Score = 23.6 bits (50), Expect = 9.9
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 44 DIEMDETLSDIAEEELESICQNLLANPVI 72
                  + +  + L S C+N+L  P  
Sbjct: 18 GFSKTLLGTKLEAKYLCSACRNVLRRPFQ 46


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.313    0.132    0.349 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 612,835
Number of extensions: 22877
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 42
Length of query: 84
Length of database: 4,956,049
Length adjustment: 47
Effective length of query: 37
Effective length of database: 3,367,214
Effective search space: 124586918
Effective search space used: 124586918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)