RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780972|ref|YP_003065385.1|
phosphoribosylformylglycinamidine synthase, PurS protein [Candidatus
Liberibacter asiaticus str. psy62]
         (84 letters)



>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA,
          national project on protein structural and functional
          analyses; 2.30A {Methanocaldococcus jannaschii}
          Length = 83

 Score =  104 bits (262), Expect = 5e-24
 Identities = 38/81 (46%), Positives = 61/81 (75%)

Query: 1  MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
          M KA V++KLKK VL+P+G+ ++ AL+ +GF+N+ +++  K+ DI M+    +  +EE+E
Sbjct: 1  MYKATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTYKMIDIIMEGENEEKVKEEVE 60

Query: 61 SICQNLLANPVIEDYDIKVQK 81
           +C+ LLANPVI DY+IKV+K
Sbjct: 61 EMCKKLLANPVIHDYEIKVEK 81


>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS subunit; TM1244,
          PURS subunit (EC 6.3.5.3), structural genomics; 1.90A
          {Thermotoga maritima MSB8} SCOP: d.284.1.1 PDB: 3d54_B*
          Length = 94

 Score = 99.8 bits (249), Expect = 1e-22
 Identities = 21/79 (26%), Positives = 45/79 (56%)

Query: 1  MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
          + K  + V+ + +V DP+G+ ++  L       + ++R GK   +E++    + A E ++
Sbjct: 15 LFKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEIVK 74

Query: 61 SICQNLLANPVIEDYDIKV 79
            C+ LL NPV+E+Y+++ 
Sbjct: 75 KACEELLVNPVVEEYEVRE 93


>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR,
          FGAM, structural protein; 2.00A {Bacillus subtilis}
          SCOP: d.284.1.1 PDB: 1twj_A
          Length = 84

 Score = 97.3 bits (243), Expect = 7e-22
 Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 1  MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
          M K  V V LK+ VLDPQG A++ AL ++ ++ +  +R GK  ++ ++++  D  +  ++
Sbjct: 1  MYKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKSDRD-LDVLVK 59

Query: 61 SICQNLLANPVIEDYDIKVQK 81
           +C+ LLAN VIEDY  +V++
Sbjct: 60 EMCEKLLANTVIEDYRYEVEE 80


>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway,
          PSI, protein structure initiative, NESG; 2.56A
          {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
          Length = 85

 Score = 93.2 bits (232), Expect = 1e-20
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 3  KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
             V ++LKK +L+P+   ++ AL+ +G+  +       +    MDE   +  E E+E +
Sbjct: 4  MVEVRIRLKKGMLNPEAATIERALALLGY-EVEDTDTTDVITFTMDEDSLEAVEREVEDM 62

Query: 63 CQNLLANPVIEDYDIKVQKSSS 84
          CQ LL NPVI DYD+ + + SS
Sbjct: 63 CQRLLCNPVIHDYDVSINEMSS 84


>2zw2_A Putative uncharacterized protein STS178; purine metabolism,
          ligase; 1.55A {Sulfolobus tokodaii}
          Length = 92

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 1  MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
          + +  +++  K+ V DP+G+ ++  + +     I + R GK     ++ +    A E ++
Sbjct: 5  LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGKYLVFRVNSSSQQEATELVK 64

Query: 61 SICQNL-LANPVIEDYDIKVQKS 82
           +   + L NP++   +I+  + 
Sbjct: 65 KLADEMRLYNPIVHKIEIRANRI 87


>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA,
          national project on protein structural and functional
          analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
          Length = 84

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 3  KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
          +A ++++LKK +LDPQG+A++  L ++G   + ++R GK+ +I         AEE+ +++
Sbjct: 5  QATLLIELKKGILDPQGRAVEGVLKDLGH-PVEEVRVGKVLEIVFPAENLLEAEEKAKAM 63

Query: 63 CQNLLANPVIEDYDIKVQK 81
             LLANPV+E Y ++  K
Sbjct: 64 GA-LLANPVMEVYALEALK 81


>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto
           reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A
           {Bacillus subtilis} SCOP: c.1.7.1
          Length = 333

 Score = 30.7 bits (68), Expect = 0.083
 Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 29  IGFHNINQIRQ-GKIFDIEMDETLSDIAEEELESICQNLLANPVIEDY 75
            G     Q+    +I        L+   ++++ +I +N +++PV  ++
Sbjct: 279 WGARKPGQLEALSEITGWT----LNSEDQKDINTILENTISDPVGPEF 322


>2qiz_A Ubiquitin conjugation factor E4; helical hairpin, ligase; 2.56A
           {Saccharomyces cerevisiae} PDB: 2qj0_A
          Length = 982

 Score = 30.3 bits (68), Expect = 0.11
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 34  INQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVI 72
            N+  + +  D E D    D+ +E L+ +   ++ +PVI
Sbjct: 882 ANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVI 920


>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
          coiled coil, cytoplasm, metal- binding, UBL
          conjugation, UBL conjugation pathway; 2.20A {Homo
          sapiens}
          Length = 170

 Score = 28.6 bits (62), Expect = 0.34
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)

Query: 43 FDIEMDETLSDIAEEELE-SICQNLLANPVI 72
          +D+E D  L    E + E  IC   L   V 
Sbjct: 7  YDVEFDPPL----ESKYECPICLMALREAVQ 33


>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
           conjugation pathway, DNA damage, nucleus,
           phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
           cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
          Length = 968

 Score = 28.6 bits (63), Expect = 0.38
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 34  INQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVI 72
            N+  + +  D E D    D+ +E L+ +   ++ +PVI
Sbjct: 868 ANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVI 906


>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR,
           AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans}
          Length = 348

 Score = 27.7 bits (61), Expect = 0.72
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 5/48 (10%)

Query: 29  IGFHNINQIRQ-GKIFDIEMDETLSDIAEEELESICQNLLANPVIEDY 75
            G     Q+     +F       L+D  ++ ++ I    + NP+   +
Sbjct: 298 WGARKPGQVSGVKDVFGWS----LTDEEKKAVDDILARHVPNPIDPTF 341


>3eb5_A Baculoviral IAP repeat-containing protein 3; ring domain,
          apoptosis, chromosomal rearrangement, cytoplasm,
          metal-binding, polymorphism, zinc; 2.00A {Homo sapiens}
          PDB: 3eb6_A
          Length = 74

 Score = 27.0 bits (59), Expect = 1.1
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 42 IFDIEMDETLSDIAEEELESICQNLLANPVI 72
          + D+ ++E L  + EE    +C +   + V 
Sbjct: 9  VSDLPVEEQLRRLQEERTCKVCMDKEVSIVF 39


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl reductase,
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 2006

 Score = 26.8 bits (59), Expect = 1.1
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 8/41 (19%)

Query: 20   KALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
            +AL T ++N+    +N I+  KI  IE+ ++LS    EE+E
Sbjct: 1860 RALDT-VTNV----LNFIKLQKIDIIELQKSLS---LEEVE 1892



 Score = 25.7 bits (56), Expect = 3.0
 Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 20/72 (27%)

Query: 4   ANVVVKLKKDV----LDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEEL 59
                 + KD+    +    K ++  +    +        G       D  L  ++    
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPV----YDT----FDGS------D--LRVLSGSIS 476

Query: 60  ESICQNLLANPV 71
           E I   ++  PV
Sbjct: 477 ERIVDCIIRLPV 488


>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
          coiled coil, cytoplasm, metal- binding, UBL
          conjugation, UBL conjugation pathway; 2.10A {Homo
          sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
          Length = 118

 Score = 26.7 bits (58), Expect = 1.4
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)

Query: 43 FDIEMDETLSDIAEEELE-SICQNLLANPVI 72
          +D+E D  L    E + E  IC   L   V 
Sbjct: 7  YDVEFDPPL----ESKYECPICLMALREAVQ 33


>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
          PSI, protein structure initiative, NYSG oxidoreductase;
          2.20A {Escherichia coli}
          Length = 483

 Score = 26.7 bits (58), Expect = 1.4
 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 14 VLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDI-AEEELESICQ-NLLANPV 71
          + D   +AL  A+  I     +++ +GK+     + TL  +    ++ ++   +L+    
Sbjct: 33 LYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHALAAADLVIEAA 92

Query: 72 IEDYDIK 78
           E  ++K
Sbjct: 93 SERLEVK 99


>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
          protein structure initiative, northeast structural
          genomics consortium, NESG; HET: MSE; 2.29A {Homo
          sapiens}
          Length = 100

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 46 EMDE-TLSDIAEEELESICQNLLANPVI 72
           MDE ++  IAE     IC   L +  +
Sbjct: 10 HMDEQSVESIAEVFRCFICMEKLRDARL 37


>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
          UBL conjugation pathway; NMR {Mus musculus}
          Length = 85

 Score = 25.6 bits (56), Expect = 3.0
 Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72
          E+D   SD  +E  + +   L+ +PV 
Sbjct: 5  EID--YSDAPDEFRDPLMDTLMTDPVR 29


>3l0i_A DRRA, SIDM; GEF/GDF-RAB complex, GTP-binding, guanine-nucleotide
           exchange factor, GDI-displacement factor; 2.85A
           {Legionella pneumophila}
          Length = 363

 Score = 25.1 bits (54), Expect = 3.8
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 7   VVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
           +++  KDV DP  K        I  HN   +   KI  I+  E  +++ +E LES+
Sbjct: 284 IMQFIKDVADPTSK--------IWMHNTKALMNHKIAAIQKLERSNNVNDETLESV 331


>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
          domain, structural genomics, NPPSFA; NMR {Homo sapiens}
          Length = 73

 Score = 24.6 bits (53), Expect = 5.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 49 ETLSDIAEEELESICQNLLANPVI 72
          + ++ + EE +  IC ++L  PV 
Sbjct: 12 QFVNKLQEEVICPICLDILQKPVT 35


>2wwx_B DRRA, SIDM; golgi apparatus, protein transport, ER-golgi transport,
           endoplasmic reticulum, prenylation, lipoprotein,
           GTP-binding; 1.50A {Legionella pneumophila}
          Length = 217

 Score = 24.7 bits (53), Expect = 5.6
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 7   VVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
           +++  KDV DP  K        I  HN   +   KI  I+  E  +++ +E LES+
Sbjct: 155 IMQFIKDVADPTSK--------IWMHNTKALMNHKIAAIQKLERSNNVNDETLESV 202


>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
          zinc-binding domain, structural genomics, NPPSFA; NMR
          {Homo sapiens}
          Length = 75

 Score = 24.6 bits (53), Expect = 5.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 44 DIEMDETLSDIAEEELESICQNLLANPVI 72
          +I  +E L  + EE+L  IC +     V 
Sbjct: 12 EISTEEQLRRLQEEKLCKICMDRNIAIVF 40


>1z6u_A NP95-like ring finger protein isoform B; structural genomics
          consortium, ligase, ubiquitin-protein ligase, cell
          cycle regulation, SGC; 2.10A {Homo sapiens}
          Length = 150

 Score = 24.4 bits (52), Expect = 6.6
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72
          E    L  + +  +   CQ L+  PV 
Sbjct: 67 EGPNFLKKLEQSFMCVCCQELVYQPVT 93


>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout
          mtase, adoMet binding, transferase; HET: SAM; 2.00A
          {Thermotoga maritima}
          Length = 192

 Score = 24.3 bits (52), Expect = 6.7
 Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 14 VLDPQGKALKTALSNIGFHNINQIRQGKIFDI 45
          +    G  + TA++N+  H+I   R  + +++
Sbjct: 14 IKGKDGSIISTAVTNLDVHDI--ARTARTYNL 43


>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
          ligase, E4 polyubiquitin chain elongation factor,
          alternative splicing, cytoplasm; NMR {Homo sapiens}
          Length = 100

 Score = 24.2 bits (52), Expect = 7.9
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72
            +   SD  +E  + +   L+ +PV 
Sbjct: 18 RAEIDYSDAPDEFRDPLMDTLMTDPVR 44


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.313    0.132    0.349 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 713,280
Number of extensions: 27712
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 36
Length of query: 84
Length of database: 5,693,230
Length adjustment: 52
Effective length of query: 32
Effective length of database: 4,432,542
Effective search space: 141841344
Effective search space used: 141841344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)