RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780972|ref|YP_003065385.1| phosphoribosylformylglycinamidine synthase, PurS protein [Candidatus Liberibacter asiaticus str. psy62] (84 letters) >2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protein structural and functional analyses; 2.30A {Methanocaldococcus jannaschii} Length = 83 Score = 104 bits (262), Expect = 5e-24 Identities = 38/81 (46%), Positives = 61/81 (75%) Query: 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60 M KA V++KLKK VL+P+G+ ++ AL+ +GF+N+ +++ K+ DI M+ + +EE+E Sbjct: 1 MYKATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTYKMIDIIMEGENEEKVKEEVE 60 Query: 61 SICQNLLANPVIEDYDIKVQK 81 +C+ LLANPVI DY+IKV+K Sbjct: 61 EMCKKLLANPVIHDYEIKVEK 81 >1vq3_A Phosphoribosylformylglycinamidine synthase, PURS subunit; TM1244, PURS subunit (EC 6.3.5.3), structural genomics; 1.90A {Thermotoga maritima MSB8} SCOP: d.284.1.1 PDB: 3d54_B* Length = 94 Score = 99.8 bits (249), Expect = 1e-22 Identities = 21/79 (26%), Positives = 45/79 (56%) Query: 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60 + K + V+ + +V DP+G+ ++ L + ++R GK +E++ + A E ++ Sbjct: 15 LFKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEIVK 74 Query: 61 SICQNLLANPVIEDYDIKV 79 C+ LL NPV+E+Y+++ Sbjct: 75 KACEELLVNPVVEEYEVRE 93 >1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, FGAM, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A Length = 84 Score = 97.3 bits (243), Expect = 7e-22 Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 1/81 (1%) Query: 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60 M K V V LK+ VLDPQG A++ AL ++ ++ + +R GK ++ ++++ D + ++ Sbjct: 1 MYKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKSDRD-LDVLVK 59 Query: 61 SICQNLLANPVIEDYDIKVQK 81 +C+ LLAN VIEDY +V++ Sbjct: 60 EMCEKLLANTVIEDYRYEVEE 80 >1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1 Length = 85 Score = 93.2 bits (232), Expect = 1e-20 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 3 KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62 V ++LKK +L+P+ ++ AL+ +G+ + + MDE + E E+E + Sbjct: 4 MVEVRIRLKKGMLNPEAATIERALALLGY-EVEDTDTTDVITFTMDEDSLEAVEREVEDM 62 Query: 63 CQNLLANPVIEDYDIKVQKSSS 84 CQ LL NPVI DYD+ + + SS Sbjct: 63 CQRLLCNPVIHDYDVSINEMSS 84 >2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii} Length = 92 Score = 92.5 bits (230), Expect = 2e-20 Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60 + + +++ K+ V DP+G+ ++ + + I + R GK ++ + A E ++ Sbjct: 5 LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGKYLVFRVNSSSQQEATELVK 64 Query: 61 SICQNL-LANPVIEDYDIKVQKS 82 + + L NP++ +I+ + Sbjct: 65 KLADEMRLYNPIVHKIEIRANRI 87 >2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A Length = 84 Score = 88.1 bits (219), Expect = 4e-19 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 2/79 (2%) Query: 3 KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62 +A ++++LKK +LDPQG+A++ L ++G + ++R GK+ +I AEE+ +++ Sbjct: 5 QATLLIELKKGILDPQGRAVEGVLKDLGH-PVEEVRVGKVLEIVFPAENLLEAEEKAKAM 63 Query: 63 CQNLLANPVIEDYDIKVQK 81 LLANPV+E Y ++ K Sbjct: 64 GA-LLANPVMEVYALEALK 81 >1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1 Length = 333 Score = 30.7 bits (68), Expect = 0.083 Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 5/48 (10%) Query: 29 IGFHNINQIRQ-GKIFDIEMDETLSDIAEEELESICQNLLANPVIEDY 75 G Q+ +I L+ ++++ +I +N +++PV ++ Sbjct: 279 WGARKPGQLEALSEITGWT----LNSEDQKDINTILENTISDPVGPEF 322 >2qiz_A Ubiquitin conjugation factor E4; helical hairpin, ligase; 2.56A {Saccharomyces cerevisiae} PDB: 2qj0_A Length = 982 Score = 30.3 bits (68), Expect = 0.11 Identities = 10/39 (25%), Positives = 20/39 (51%) Query: 34 INQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVI 72 N+ + + D E D D+ +E L+ + ++ +PVI Sbjct: 882 ANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVI 920 >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Score = 28.6 bits (62), Expect = 0.34 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%) Query: 43 FDIEMDETLSDIAEEELE-SICQNLLANPVI 72 +D+E D L E + E IC L V Sbjct: 7 YDVEFDPPL----ESKYECPICLMALREAVQ 33 >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 Score = 28.6 bits (63), Expect = 0.38 Identities = 10/39 (25%), Positives = 20/39 (51%) Query: 34 INQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVI 72 N+ + + D E D D+ +E L+ + ++ +PVI Sbjct: 868 ANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVI 906 >3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} Length = 348 Score = 27.7 bits (61), Expect = 0.72 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 5/48 (10%) Query: 29 IGFHNINQIRQ-GKIFDIEMDETLSDIAEEELESICQNLLANPVIEDY 75 G Q+ +F L+D ++ ++ I + NP+ + Sbjct: 298 WGARKPGQVSGVKDVFGWS----LTDEEKKAVDDILARHVPNPIDPTF 341 >3eb5_A Baculoviral IAP repeat-containing protein 3; ring domain, apoptosis, chromosomal rearrangement, cytoplasm, metal-binding, polymorphism, zinc; 2.00A {Homo sapiens} PDB: 3eb6_A Length = 74 Score = 27.0 bits (59), Expect = 1.1 Identities = 7/31 (22%), Positives = 15/31 (48%) Query: 42 IFDIEMDETLSDIAEEELESICQNLLANPVI 72 + D+ ++E L + EE +C + + V Sbjct: 9 VSDLPVEEQLRRLQEERTCKVCMDKEVSIVF 39 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.8 bits (59), Expect = 1.1 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 8/41 (19%) Query: 20 KALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60 +AL T ++N+ +N I+ KI IE+ ++LS EE+E Sbjct: 1860 RALDT-VTNV----LNFIKLQKIDIIELQKSLS---LEEVE 1892 Score = 25.7 bits (56), Expect = 3.0 Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 20/72 (27%) Query: 4 ANVVVKLKKDV----LDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEEL 59 + KD+ + K ++ + + G D L ++ Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPV----YDT----FDGS------D--LRVLSGSIS 476 Query: 60 ESICQNLLANPV 71 E I ++ PV Sbjct: 477 ERIVDCIIRLPV 488 >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Score = 26.7 bits (58), Expect = 1.4 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%) Query: 43 FDIEMDETLSDIAEEELE-SICQNLLANPVI 72 +D+E D L E + E IC L V Sbjct: 7 YDVEFDPPL----ESKYECPICLMALREAVQ 33 >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 Score = 26.7 bits (58), Expect = 1.4 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 14 VLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDI-AEEELESICQ-NLLANPV 71 + D +AL A+ I +++ +GK+ + TL + ++ ++ +L+ Sbjct: 33 LYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHALAAADLVIEAA 92 Query: 72 IEDYDIK 78 E ++K Sbjct: 93 SERLEVK 99 >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Score = 26.4 bits (58), Expect = 1.7 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%) Query: 46 EMDE-TLSDIAEEELESICQNLLANPVI 72 MDE ++ IAE IC L + + Sbjct: 10 HMDEQSVESIAEVFRCFICMEKLRDARL 37 >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 Score = 25.6 bits (56), Expect = 3.0 Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%) Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72 E+D SD +E + + L+ +PV Sbjct: 5 EID--YSDAPDEFRDPLMDTLMTDPVR 29 >3l0i_A DRRA, SIDM; GEF/GDF-RAB complex, GTP-binding, guanine-nucleotide exchange factor, GDI-displacement factor; 2.85A {Legionella pneumophila} Length = 363 Score = 25.1 bits (54), Expect = 3.8 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%) Query: 7 VVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62 +++ KDV DP K I HN + KI I+ E +++ +E LES+ Sbjct: 284 IMQFIKDVADPTSK--------IWMHNTKALMNHKIAAIQKLERSNNVNDETLESV 331 >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73 Score = 24.6 bits (53), Expect = 5.5 Identities = 7/24 (29%), Positives = 14/24 (58%) Query: 49 ETLSDIAEEELESICQNLLANPVI 72 + ++ + EE + IC ++L PV Sbjct: 12 QFVNKLQEEVICPICLDILQKPVT 35 >2wwx_B DRRA, SIDM; golgi apparatus, protein transport, ER-golgi transport, endoplasmic reticulum, prenylation, lipoprotein, GTP-binding; 1.50A {Legionella pneumophila} Length = 217 Score = 24.7 bits (53), Expect = 5.6 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%) Query: 7 VVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62 +++ KDV DP K I HN + KI I+ E +++ +E LES+ Sbjct: 155 IMQFIKDVADPTSK--------IWMHNTKALMNHKIAAIQKLERSNNVNDETLESV 202 >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Score = 24.6 bits (53), Expect = 5.6 Identities = 9/29 (31%), Positives = 14/29 (48%) Query: 44 DIEMDETLSDIAEEELESICQNLLANPVI 72 +I +E L + EE+L IC + V Sbjct: 12 EISTEEQLRRLQEEKLCKICMDRNIAIVF 40 >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Score = 24.4 bits (52), Expect = 6.6 Identities = 7/27 (25%), Positives = 11/27 (40%) Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72 E L + + + CQ L+ PV Sbjct: 67 EGPNFLKKLEQSFMCVCCQELVYQPVT 93 >3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} Length = 192 Score = 24.3 bits (52), Expect = 6.7 Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Query: 14 VLDPQGKALKTALSNIGFHNINQIRQGKIFDI 45 + G + TA++N+ H+I R + +++ Sbjct: 14 IKGKDGSIISTAVTNLDVHDI--ARTARTYNL 43 >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain elongation factor, alternative splicing, cytoplasm; NMR {Homo sapiens} Length = 100 Score = 24.2 bits (52), Expect = 7.9 Identities = 6/27 (22%), Positives = 12/27 (44%) Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72 + SD +E + + L+ +PV Sbjct: 18 RAEIDYSDAPDEFRDPLMDTLMTDPVR 44 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.313 0.132 0.349 Gapped Lambda K H 0.267 0.0477 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 713,280 Number of extensions: 27712 Number of successful extensions: 126 Number of sequences better than 10.0: 1 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 36 Length of query: 84 Length of database: 5,693,230 Length adjustment: 52 Effective length of query: 32 Effective length of database: 4,432,542 Effective search space: 141841344 Effective search space used: 141841344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 50 (23.6 bits)