BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780972|ref|YP_003065385.1|
phosphoribosylformylglycinamidine synthase, PurS protein [Candidatus
Liberibacter asiaticus str. psy62]
(84 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780972|ref|YP_003065385.1| phosphoribosylformylglycinamidine synthase, PurS protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 84
Score = 169 bits (427), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE
Sbjct: 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
Query: 61 SICQNLLANPVIEDYDIKVQKSSS 84
SICQNLLANPVIEDYDIKVQKSSS
Sbjct: 61 SICQNLLANPVIEDYDIKVQKSSS 84
>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 492
Score = 23.5 bits (49), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 18/73 (24%)
Query: 10 LKKDVLDPQGKALKTALSNIGFHNI-------NQIRQGKIFD-----------IEMDETL 51
L K D KAL T L +I HNI + + Q F I + E
Sbjct: 76 LHKRNYDKGYKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEYLVYLLEVQIALAERQ 135
Query: 52 SDIAEEELESICQ 64
+IA E+LE + Q
Sbjct: 136 YNIAHEKLEMMLQ 148
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 21.9 bits (45), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 35 NQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVIEDYDI 77
N+I QG FD + E E+I N V DYDI
Sbjct: 629 NRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDI 671
Score = 21.6 bits (44), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 47 MDETLSDIAEEELESICQN 65
D LSD E +++++CQN
Sbjct: 836 FDSYLSDAMEIDVDALCQN 854
>gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 397
Score = 20.8 bits (42), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 48 DETLSDIAEEELESICQNLLANPVIEDYDIK 78
D+ L+ I EE+ + + + NP +D+D++
Sbjct: 24 DDRLNSIQEEKRNNSTKTINKNPNKQDFDVQ 54
>gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 362
Score = 20.8 bits (42), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 36 QIRQGKIFDIEMDETLSDIAEEELESICQNLLANPV 71
+I+ GK I + + D++EEEL+ I +L++ V
Sbjct: 203 KIKTGKFVPIFLKIS-PDLSEEELDDIAVEVLSHKV 237
>gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 311
Score = 20.4 bits (41), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 26 LSNIGFHNINQIRQGKIFDIEMDETLSDIAEEE 58
L+N + ++ R F+ D+T+S +A+EE
Sbjct: 242 LANKNIYQLSNPRYSYQFNTLKDKTISFVAKEE 274
>gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 388
Score = 20.0 bits (40), Expect = 7.9, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 48 DETLSDIAEEELESICQNLLANPVIEDYDIKVQKSS 83
++ +SD EEL+ + PVI DI K +
Sbjct: 341 EQKVSDEFWEELQELITRGDGKPVIAPRDIPTNKQT 376
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 437
Score = 20.0 bits (40), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 23 KTALSNIGFHNINQIRQGKIFDIEMD----ETLSDIA 55
KTA SN ++R G+I D E+D +T SDI+
Sbjct: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.313 0.132 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,164
Number of Sequences: 1233
Number of extensions: 1690
Number of successful extensions: 9
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 84
length of database: 328,796
effective HSP length: 53
effective length of query: 31
effective length of database: 263,447
effective search space: 8166857
effective search space used: 8166857
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 31 (16.5 bits)