RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780973|ref|YP_003065386.1|
phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus
Liberibacter asiaticus str. psy62]
(255 letters)
>gnl|CDD|181800 PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Reviewed.
Length = 238
Score = 283 bits (728), Expect = 2e-77
Identities = 113/241 (46%), Positives = 155/241 (64%), Gaps = 3/241 (1%)
Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60
M + +YE K KI+Y +P LI FKDD N + ++GKGVLNN+IS ++F +
Sbjct: 1 MEKKELLYEGKAKIVYSTDDPDLLIVEFKDDATAFNGEKKEQIDGKGVLNNQISSFIFKK 60
Query: 61 LGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEF 120
L + GIP +FI +++ REQLV+ VE+IPL + VRN AAGSL KRL I EG LP +VEF
Sbjct: 61 LEEAGIPTHFIEKLSDREQLVKKVEIIPLEVVVRNVAAGSLVKRLGIEEGTVLPPPIVEF 120
Query: 121 YYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKC 180
YY D+ +++E+HI A WA E+ E+ L+++IND + GLF G I+LVDF+++
Sbjct: 121 YYKNDALGDPMINEDHILALGWATPEELAEIKELALKINDVLKGLFAGAGIRLVDFKLEF 180
Query: 181 GRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGIFK 240
GR D + IVLADEI PD CRLWD E+ DK RF + ++E Y EV +RLG
Sbjct: 181 GRDKDGE---IVLADEISPDTCRLWDKETNEKLDKDRFRRDLGGVIEAYEEVLKRLGELL 237
Query: 241 K 241
+
Sbjct: 238 E 238
>gnl|CDD|161698 TIGR00081, purC, phosphoribosylaminoimidazole-succinocarboxamide
synthase. Check length. Longer versions may be
multifunctional enzymes.
Length = 237
Score = 171 bits (434), Expect = 2e-43
Identities = 91/238 (38%), Positives = 138/238 (57%), Gaps = 7/238 (2%)
Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60
++ R +Y K K IYE +P L F+DD + + + GKG LN +IS ++F +
Sbjct: 3 IKKRQKLYSGKAKDIYETDDPDLLRFVFRDDISAFDGEKKDQIPGKGRLNTKISAFIFEK 62
Query: 61 LGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEF 120
L + GIP ++I I RE LV+ +++IPL + VRN AAGSL KRL IPEGL L + LVEF
Sbjct: 63 LEEAGIPTHYIDLIEDREMLVKKLDIIPLEVIVRNIAAGSLLKRLGIPEGLELEQPLVEF 122
Query: 121 YYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKC 180
+ PD +++E + A A + E+E + L++++N+ + F I LVDF+++
Sbjct: 123 IFKPDEVGDPMLNESYAEALGLATEEELERIKELALKVNEVLKKYFDEKGIILVDFKLEF 182
Query: 181 GRLLDDDILRIVLADEIFPDCCRLWDL----SKKEECDKKRFSKSNDQLLEGYSEVAR 234
G D+ ++LADE+ PD CRLWD + DK F ++ +L+E Y VAR
Sbjct: 183 GL---DEEGNLILADEVSPDTCRLWDKETYEVGAPKLDKDIFRRTLGKLIEAYETVAR 237
>gnl|CDD|184419 PRK13959, PRK13959, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 341
Score = 28.5 bits (64), Expect = 1.8
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 23/98 (23%)
Query: 86 MIPLLITVRNT--AAGSLAKRL---------------NIPE-GLSLPRSLVEFYYLPDSS 127
+IPL + RN SL R+ PE G+ LP +VEF +
Sbjct: 121 LIPLEVIFRNYVPVGSSLRDRIKEGKIKPEDLGLDADEWPEEGVKLPEPIVEFSTKYEEQ 180
Query: 128 EKTLVSEEHITAFNWAN--QSEVEEMTALSIRINDFMT 163
++ L +E A A ++E+EE+ L++++++ +T
Sbjct: 181 DRYLSRKE---ADEIAGLSRAEIEELEELALKVDEIIT 215
>gnl|CDD|183621 PRK12607, PRK12607, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 313
Score = 27.5 bits (62), Expect = 3.1
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 173 LVDFRIKCGRLLDDDILRIVLADEIF-PDCCRLWDLSKKEECDKKRFSKSNDQ 224
LVD + + G+ D RIVL DEI PD R W EE RF+ Q
Sbjct: 196 LVDTKYEFGKDADG---RIVLIDEIHTPDSSRYWYADGYEE----RFAAGEPQ 241
>gnl|CDD|184913 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 27.0 bits (60), Expect = 5.4
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 182 RLLDDDILRIVLA--DEIFPDCCRLWDLSKKEECDKK 216
L DDDIL VLA D + D L LS KE KK
Sbjct: 605 SLADDDILDAVLAARDSLLSD---LDALSPKEGDGKK 638
>gnl|CDD|162852 TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ. Members
of this family are LysR-family transcription factors
associated with operons for catabolism of
protocatechuate. Members occur only in Proteobacteria.
Length = 300
Score = 26.6 bits (59), Expect = 5.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 81 VRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVE 119
V + P+L+ +A LA+RL I G+ P +E
Sbjct: 187 VASLADYPVLLPPEGSAIRPLAERLFIACGIPPPPQRIE 225
>gnl|CDD|184421 PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 296
Score = 26.7 bits (60), Expect = 6.7
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 42/194 (21%)
Query: 45 GKGVLNNRISEYMFTQLGKIGIPHYFI-----RRINMREQ--------LVRDVEMIPLLI 91
KG + ++S + F +L I +P++ + E +V+ ++ +P+
Sbjct: 52 DKGRVLTQMSNFWFDKLAHI-VPNHLTGIDVDDVVPADEADQVLGRAVVVKKLKPLPVEC 110
Query: 92 TVRNTAAGSLAK---RLNIPEGLSLPRSLVEFYYLPDS----SEKTLVSE--EHITAFNW 142
VR GS K G+ LP LVE LP+ + K + + E+I+ F
Sbjct: 111 VVRGYLTGSGWKDYQATGTVCGIKLPAGLVEASKLPEPIFTPATKAELGDHDENIS-F-- 167
Query: 143 ANQSEVEEM----TA-----LSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVL 193
EV E+ A ++ I I + D + + G LD+D + L
Sbjct: 168 ---EEVVELVGAELAAQLRDATLAIYKEAADYAATRGIIIADTKFEFG--LDED-GTLTL 221
Query: 194 ADEIF-PDCCRLWD 206
DE+ PD R W
Sbjct: 222 MDEVLTPDSSRFWP 235
>gnl|CDD|115025 pfam06340, TcpF, Vibrio cholerae toxin co-regulated pilus
biosynthesis protein F. This family consists of several
Vibrio cholerae toxin co-regulated pilus biosynthesis
protein F (TcpF) sequences. TcpF is known to be a
secreted virulence protein but its exact function is
unknown.
Length = 329
Score = 26.4 bits (58), Expect = 8.6
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 4 RNPVYEEKTKIIYEGLE-PGTLIQFFKDDNL 33
NPVY E TK + PG I F ++L
Sbjct: 262 YNPVYTETTKPYHPSNNSPGKKIYEFSSNDL 292
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.140 0.409
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,233,504
Number of extensions: 270713
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 16
Length of query: 255
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 164
Effective length of database: 4,028,145
Effective search space: 660615780
Effective search space used: 660615780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)