RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780973|ref|YP_003065386.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62] (255 letters) >gnl|CDD|181800 PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed. Length = 238 Score = 283 bits (728), Expect = 2e-77 Identities = 113/241 (46%), Positives = 155/241 (64%), Gaps = 3/241 (1%) Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60 M + +YE K KI+Y +P LI FKDD N + ++GKGVLNN+IS ++F + Sbjct: 1 MEKKELLYEGKAKIVYSTDDPDLLIVEFKDDATAFNGEKKEQIDGKGVLNNQISSFIFKK 60 Query: 61 LGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEF 120 L + GIP +FI +++ REQLV+ VE+IPL + VRN AAGSL KRL I EG LP +VEF Sbjct: 61 LEEAGIPTHFIEKLSDREQLVKKVEIIPLEVVVRNVAAGSLVKRLGIEEGTVLPPPIVEF 120 Query: 121 YYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKC 180 YY D+ +++E+HI A WA E+ E+ L+++IND + GLF G I+LVDF+++ Sbjct: 121 YYKNDALGDPMINEDHILALGWATPEELAEIKELALKINDVLKGLFAGAGIRLVDFKLEF 180 Query: 181 GRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGIFK 240 GR D + IVLADEI PD CRLWD E+ DK RF + ++E Y EV +RLG Sbjct: 181 GRDKDGE---IVLADEISPDTCRLWDKETNEKLDKDRFRRDLGGVIEAYEEVLKRLGELL 237 Query: 241 K 241 + Sbjct: 238 E 238 >gnl|CDD|161698 TIGR00081, purC, phosphoribosylaminoimidazole-succinocarboxamide synthase. Check length. Longer versions may be multifunctional enzymes. Length = 237 Score = 171 bits (434), Expect = 2e-43 Identities = 91/238 (38%), Positives = 138/238 (57%), Gaps = 7/238 (2%) Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60 ++ R +Y K K IYE +P L F+DD + + + GKG LN +IS ++F + Sbjct: 3 IKKRQKLYSGKAKDIYETDDPDLLRFVFRDDISAFDGEKKDQIPGKGRLNTKISAFIFEK 62 Query: 61 LGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEF 120 L + GIP ++I I RE LV+ +++IPL + VRN AAGSL KRL IPEGL L + LVEF Sbjct: 63 LEEAGIPTHYIDLIEDREMLVKKLDIIPLEVIVRNIAAGSLLKRLGIPEGLELEQPLVEF 122 Query: 121 YYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKC 180 + PD +++E + A A + E+E + L++++N+ + F I LVDF+++ Sbjct: 123 IFKPDEVGDPMLNESYAEALGLATEEELERIKELALKVNEVLKKYFDEKGIILVDFKLEF 182 Query: 181 GRLLDDDILRIVLADEIFPDCCRLWDL----SKKEECDKKRFSKSNDQLLEGYSEVAR 234 G D+ ++LADE+ PD CRLWD + DK F ++ +L+E Y VAR Sbjct: 183 GL---DEEGNLILADEVSPDTCRLWDKETYEVGAPKLDKDIFRRTLGKLIEAYETVAR 237 >gnl|CDD|184419 PRK13959, PRK13959, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional. Length = 341 Score = 28.5 bits (64), Expect = 1.8 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 23/98 (23%) Query: 86 MIPLLITVRNT--AAGSLAKRL---------------NIPE-GLSLPRSLVEFYYLPDSS 127 +IPL + RN SL R+ PE G+ LP +VEF + Sbjct: 121 LIPLEVIFRNYVPVGSSLRDRIKEGKIKPEDLGLDADEWPEEGVKLPEPIVEFSTKYEEQ 180 Query: 128 EKTLVSEEHITAFNWAN--QSEVEEMTALSIRINDFMT 163 ++ L +E A A ++E+EE+ L++++++ +T Sbjct: 181 DRYLSRKE---ADEIAGLSRAEIEELEELALKVDEIIT 215 >gnl|CDD|183621 PRK12607, PRK12607, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional. Length = 313 Score = 27.5 bits (62), Expect = 3.1 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 8/53 (15%) Query: 173 LVDFRIKCGRLLDDDILRIVLADEIF-PDCCRLWDLSKKEECDKKRFSKSNDQ 224 LVD + + G+ D RIVL DEI PD R W EE RF+ Q Sbjct: 196 LVDTKYEFGKDADG---RIVLIDEIHTPDSSRYWYADGYEE----RFAAGEPQ 241 >gnl|CDD|184913 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional. Length = 944 Score = 27.0 bits (60), Expect = 5.4 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 5/37 (13%) Query: 182 RLLDDDILRIVLA--DEIFPDCCRLWDLSKKEECDKK 216 L DDDIL VLA D + D L LS KE KK Sbjct: 605 SLADDDILDAVLAARDSLLSD---LDALSPKEGDGKK 638 >gnl|CDD|162852 TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria. Length = 300 Score = 26.6 bits (59), Expect = 5.9 Identities = 12/39 (30%), Positives = 19/39 (48%) Query: 81 VRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVE 119 V + P+L+ +A LA+RL I G+ P +E Sbjct: 187 VASLADYPVLLPPEGSAIRPLAERLFIACGIPPPPQRIE 225 >gnl|CDD|184421 PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional. Length = 296 Score = 26.7 bits (60), Expect = 6.7 Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 42/194 (21%) Query: 45 GKGVLNNRISEYMFTQLGKIGIPHYFI-----RRINMREQ--------LVRDVEMIPLLI 91 KG + ++S + F +L I +P++ + E +V+ ++ +P+ Sbjct: 52 DKGRVLTQMSNFWFDKLAHI-VPNHLTGIDVDDVVPADEADQVLGRAVVVKKLKPLPVEC 110 Query: 92 TVRNTAAGSLAK---RLNIPEGLSLPRSLVEFYYLPDS----SEKTLVSE--EHITAFNW 142 VR GS K G+ LP LVE LP+ + K + + E+I+ F Sbjct: 111 VVRGYLTGSGWKDYQATGTVCGIKLPAGLVEASKLPEPIFTPATKAELGDHDENIS-F-- 167 Query: 143 ANQSEVEEM----TA-----LSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVL 193 EV E+ A ++ I I + D + + G LD+D + L Sbjct: 168 ---EEVVELVGAELAAQLRDATLAIYKEAADYAATRGIIIADTKFEFG--LDED-GTLTL 221 Query: 194 ADEIF-PDCCRLWD 206 DE+ PD R W Sbjct: 222 MDEVLTPDSSRFWP 235 >gnl|CDD|115025 pfam06340, TcpF, Vibrio cholerae toxin co-regulated pilus biosynthesis protein F. This family consists of several Vibrio cholerae toxin co-regulated pilus biosynthesis protein F (TcpF) sequences. TcpF is known to be a secreted virulence protein but its exact function is unknown. Length = 329 Score = 26.4 bits (58), Expect = 8.6 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Query: 4 RNPVYEEKTKIIYEGLE-PGTLIQFFKDDNL 33 NPVY E TK + PG I F ++L Sbjct: 262 YNPVYTETTKPYHPSNNSPGKKIYEFSSNDL 292 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.140 0.409 Gapped Lambda K H 0.267 0.0672 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,233,504 Number of extensions: 270713 Number of successful extensions: 520 Number of sequences better than 10.0: 1 Number of HSP's gapped: 517 Number of HSP's successfully gapped: 16 Length of query: 255 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 164 Effective length of database: 4,028,145 Effective search space: 660615780 Effective search space used: 660615780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.5 bits)