RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780973|ref|YP_003065386.1|
phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus
Liberibacter asiaticus str. psy62]
(255 letters)
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
PURC, ADE2, ADE1, nucleotide complex, octahedral
magnesium coordination; HET: ADP; 2.00A {Escherichia
coli} PDB: 2gqs_A* (A:86-237)
Length = 152
Score = 157 bits (399), Expect = 1e-39
Identities = 57/152 (37%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Query: 87 IPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQS 146
+P+ VRN AAGSL KRL I EG+ L L + + D+ V+E + F W ++
Sbjct: 2 VPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDLFLKNDAXHDPXVNESYCETFGWVSKE 61
Query: 147 EVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWD 206
+ L+ + ND + LF + LVDF+++ G +VL DE PD RLWD
Sbjct: 62 NLARXKELTYKANDVLKKLFDDAGLILVDFKLEFGL--YKG--EVVLGDEFSPDGSRLWD 117
Query: 207 LSKKEECDKKRFSKSNDQLLEGYSEVARRLGI 238
E+ DK RF +S L+E Y VARRLG+
Sbjct: 118 KETLEKXDKDRFRQSLGGLIEAYEAVARRLGV 149
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
ssgcid, NIH, niaid, SBRI, UW, emerald biostructures,
ATP-binding, ligase; 1.80A {Ehrlichia chaffeensis str}
(A:105-240)
Length = 136
Score = 148 bits (375), Expect = 7e-37
Identities = 55/135 (40%), Positives = 87/135 (64%)
Query: 84 VEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWA 143
+ +IP+ + +RN AAG+ +KR I +G ++EFYY D +VSE HI +F W
Sbjct: 1 ITIIPIEVVIRNLAAGNFSKRFQIADGTPFKSPIIEFYYKNDELSDPMVSEGHILSFQWL 60
Query: 144 NQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCR 203
E+E++ LS++IN+ ++ LF + I+LVDF+++ G+L +D+ + LADEI PD CR
Sbjct: 61 TNQELEKIKILSLKINNILSELFFNVGIKLVDFKLEFGKLHNDEQSDLFLADEISPDTCR 120
Query: 204 LWDLSKKEECDKKRF 218
LWD+S + DK R+
Sbjct: 121 LWDISTNKRLDKDRY 135
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
2-layer sandwich, ligase, purine biosynthesis,
structural genomics; HET: ATP CIT; 2.03A
{Methanocaldococcus jannaschii} PDB: 2yzl_A* (A:92-222)
Length = 131
Score = 141 bits (357), Expect = 8e-35
Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Query: 86 MIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQ 145
+IP+ + VRN AAGSL +R EG LP +V+F Y D +++E+ A A +
Sbjct: 1 IIPIEVIVRNIAAGSLCRRYPFEEGKELPFPIVQFDYKNDEYGDPMLNEDIAVALGLATR 60
Query: 146 SEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLW 205
E+ ++ +++++N+ + LF I LVDF+I+ G+ + +++ADEI PD RLW
Sbjct: 61 EELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEIGKDREG---NLLVADEISPDTMRLW 117
Query: 206 DLSKKEECDKKRF 218
D ++ DK F
Sbjct: 118 DKETRDVLDKDVF 130
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide synthetase;
ADP complex, structural genomics, NPPSFA; HET: ADP;
1.75A {Geobacillus kaustophilus} (A:89-219)
Length = 131
Score = 132 bits (334), Expect = 4e-32
Identities = 57/133 (42%), Positives = 78/133 (58%), Gaps = 3/133 (2%)
Query: 86 MIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQ 145
+IPL + VRN AGSLAKR+ + EG L LVEFYY D L+ E+HI A++
Sbjct: 1 IIPLEVVVRNVVAGSLAKRIGLEEGTPLEAPLVEFYYKNDDLGDPLLLEDHIFILKLASR 60
Query: 146 SEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLW 205
EV + ++ +ND + F N++L+DF+++ GR D I+LADEI PD CRLW
Sbjct: 61 EEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFGRTADG---AILLADEISPDTCRLW 117
Query: 206 DLSKKEECDKKRF 218
D E+ DK F
Sbjct: 118 DAKTNEKLDKDVF 130
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
structural genomics, saicar synthetase, PSI, protein
structure initiative; 2.20A {Thermotoga maritima}
(A:79-199)
Length = 121
Score = 129 bits (326), Expect = 3e-31
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 87 IPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQS 146
PL + VR AGS +R EG LP LVEF+ D V +H+ A +
Sbjct: 2 FPLEVVVRLKKAGSFVRRYGGAEGEDLPVPLVEFFIKDDERHDPXVCVDHLEILGIATKK 61
Query: 147 EVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWD 206
+ E+ +++I + F N +L D + + G D +VL DEI PD RL
Sbjct: 62 QAEKXKEAAVKITLALKEFFERANFELWDIKYEFGLDKDG---NVVLGDEISPDTFRLRK 118
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase,
lyase; 2.80A {Homo sapiens} (A:90-234)
Length = 145
Score = 121 bits (306), Expect = 7e-29
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 84 VEMIPLLITVRNTAAGSLAKR-LNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNW 142
E IP+ R A GS KR + EG VE ++ D++ SEE + A +
Sbjct: 2 CEXIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKVELFFKDDANNDPQWSEEQLIAAKF 61
Query: 143 A------NQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADE 196
Q+EV+ + + I + + +L N LVD +I+ G + IVLAD
Sbjct: 62 CFAGLLIGQTEVDIXSHATQAIFEILEKSWLPQNCTLVDXKIEFGVDVTTK--EIVLADV 119
Query: 197 IFPDCCRLWDLSKKEE-CDKKRF 218
I D RLW + + DK+ +
Sbjct: 120 IDNDSWRLWPSGDRSQQKDKQSY 142
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
ligase, phosphoribosylaminoimidazolesuccinocarboxamide
(saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A
{Saccharomyces cerevisiae} (A:113-252)
Length = 140
Score = 114 bits (287), Expect = 1e-26
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 17/141 (12%)
Query: 86 MIPLLITVRNTAAGSLAKRLN-------------IPEGLSLPRSLVEFYYLPDSSEKTLV 132
+IPL + VR GS K + E P + + E
Sbjct: 1 LIPLEVIVRGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEH-DE 59
Query: 133 SEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIV 192
+ A + + L++++ I + D + + G + I+
Sbjct: 60 NISPAQAAELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTN--EII 117
Query: 193 LADEIF-PDCCRLWDLSKKEE 212
L DE+ PD R W+ + +
Sbjct: 118 LVDEVLTPDSSRFWNGASYKV 138
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide
synthetase; ADP complex, structural genomics, NPPSFA;
HET: ADP; 1.75A {Geobacillus kaustophilus}
(A:1-88,A:220-244)
Length = 113
Score = 107 bits (269), Expect = 1e-24
Identities = 34/85 (40%), Positives = 47/85 (55%)
Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60
+ +YE K K IY EP L +KD N + AT+ GKG LNN IS +F +
Sbjct: 4 PTKQQLLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLK 63
Query: 61 LGKIGIPHYFIRRINMREQLVRDVE 85
L + GI ++FI +++ EQLVR V
Sbjct: 64 LREAGIANHFIEKLSPTEQLVRRVT 88
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase,
lyase; 2.80A {Homo sapiens} (A:1-89,A:235-260,A:395-425)
Length = 146
Score = 104 bits (262), Expect = 8e-24
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 1 MRPRNPVYEEKTKIIYEGLE-PGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFT 59
+ +YE KTK +YE L+ PG ++ KD N R L GK ++N+I+ +F
Sbjct: 7 LNIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQ 66
Query: 60 QLGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAA 98
L + GI F R+ + L V+
Sbjct: 67 LLQEAGIKTAFTRKCGETAFIAPKEVTPEGLQXVKKNFE 105
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
ssgcid, NIH, niaid, SBRI, UW, emerald biostructures,
ATP-binding, ligase; 1.80A {Ehrlichia chaffeensis str}
(A:1-104,A:241-263)
Length = 127
Score = 103 bits (259), Expect = 2e-23
Identities = 35/86 (40%), Positives = 52/86 (60%)
Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60
M + +YE K KII+ L P +IQ FKD+ NN + A ++ KG+LNN IS ++ +
Sbjct: 22 MENKEKIYEGKAKIIFATLNPLEVIQHFKDEITAFNNKKAAIIHEKGILNNYISSFLMKK 81
Query: 61 LGKIGIPHYFIRRINMREQLVRDVEM 86
L GI +FI +N REQLV+ + +
Sbjct: 82 LIDKGIKTHFISLLNQREQLVKKLNL 107
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
2-layer sandwich, ligase, purine biosynthesis,
structural genomics; HET: ATP CIT; 2.03A
{Methanocaldococcus jannaschii} PDB: 2yzl_A*
(A:1-91,A:223-242)
Length = 111
Score = 102 bits (256), Expect = 5e-23
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60
+ + P+Y K K IYE + LI+F +DD N + GKG LN IS +F
Sbjct: 8 ILKKQPLYSGKAKSIYEIDDDKVLIEF-RDDITAGNGAKHDVKQGKGYLNALISSKLFEA 66
Query: 61 LGKIGIPHYFIRRINMREQLVRDVE 85
L + G+ ++I+ I R + + VE
Sbjct: 67 LEENGVKTHYIKYIEPRYMIAKKVE 91
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
PURC, ADE2, ADE1, nucleotide complex, octahedral
magnesium coordination; HET: ADP; 2.00A {Escherichia
coli} PDB: 2gqs_A* (A:1-85)
Length = 85
Score = 97.4 bits (243), Expect = 2e-21
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 4 RNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGK 63
+ +Y K K +Y P L+ F++D + R + KG +NN+ + ++ ++L +
Sbjct: 4 QAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGXVNNKFNYFIXSKLAE 63
Query: 64 IGIPHYFIRRINMREQLVRDVE 85
GIP R ++ E LV+ ++
Sbjct: 64 AGIPTQXERLLSDTECLVKKLD 85
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
ligase, phosphoribosylaminoimidazolesuccinocarboxamide
(saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A
{Saccharomyces cerevisiae} (A:1-112,A:253-305)
Length = 165
Score = 92.9 bits (231), Expect = 3e-20
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 3/110 (2%)
Query: 4 RNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGK 63
V K + IYE ++ GTL+ D + ++ KG+L ++SE+ F L
Sbjct: 11 LPLVARGKVRDIYE-VDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFL-S 68
Query: 64 IGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGS-LAKRLNIPEGLS 112
+ ++ + + + S L + +
Sbjct: 69 NDVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKSQDSYD 118
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
structural genomics, saicar synthetase, PSI, protein
structure initiative; 2.20A {Thermotoga maritima}
(A:1-78,A:200-230)
Length = 109
Score = 91.7 bits (228), Expect = 9e-20
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 8 YEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIP 67
YE KTKI+ + FKDD + + L GKG + + + L + GI
Sbjct: 3 YEGKTKIVKVT--GDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILXKYLSEKGIK 60
Query: 68 HYFIRRINMREQLVRDVEM 86
+ + I R V +++
Sbjct: 61 THLVEYIPPRTLKVIPLKI 79
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase,
structural genomics, protein structure initiative, PSI,
nysgxrc; 1.80A {Agrobacterium tumefaciens str}
(A:145-376)
Length = 232
Score = 27.0 bits (59), Expect = 2.9
Identities = 3/30 (10%), Positives = 8/30 (26%)
Query: 176 FRIKCGRLLDDDILRIVLADEIFPDCCRLW 205
F+ D I ++ ++
Sbjct: 39 FKFATPVADDGPAAEIANLRQVLGPQAKIA 68
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA
binding, lyase; 1.70A {Escherichia coli} (A:)
Length = 325
Score = 26.3 bits (56), Expect = 4.3
Identities = 5/51 (9%), Positives = 18/51 (35%)
Query: 156 IRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWD 206
R++ + +F + + I R+L + + +++ +
Sbjct: 17 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S,
iron-sulfur, metal-binding, oxidoreductase; HET: HCN;
1.39A {Clostridium pasteurianum} (A:1-124)
Length = 124
Score = 26.2 bits (57), Expect = 4.7
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 3/47 (6%)
Query: 175 DFRIKCGRLLDDDILRIVLADEIFPDC---CRLWDLSKKEECDKKRF 218
D + + +L I + C L K + +
Sbjct: 77 DAVNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKP 123
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, putative;
enolase, structural genomics, PSI, protein structure
initiative, nysgrc; 2.00A {Roseovarius nubinhibens ism}
(A:129-355)
Length = 227
Score = 25.9 bits (56), Expect = 5.4
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 176 FRIKCGRLLDDDILRIVLADEIFPDCCRL 204
F+IK G DI RI + +
Sbjct: 36 FQIKVGADWQSDIDRIRACLPLLEPGEKA 64
>2ppg_A Putative isomerase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.49A {Sinorhizobium meliloti 1021}
(A:148-379)
Length = 232
Score = 25.9 bits (56), Expect = 5.5
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 176 FRIKCGRLLDDDILRIVLADEIFPDCCRLW 205
F+ D + E R+
Sbjct: 39 FKFASPVADDGVAKEXEILRERLGPAVRIA 68
>2oqh_A Putative isomerase; PSI-II, PSI-2, NYSGXRC, enolase, TIM
barrel, structural genomics, protein structure
initiative; 1.98A {Streptomyces coelicolor A3}
(A:131-226)
Length = 96
Score = 25.5 bits (56), Expect = 6.4
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 176 FRIKCGRLLDDDILRIVLADEIFPD 200
++K D+ + E P
Sbjct: 37 VKLKGTTDCAGDVAILRAVREALPG 61
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small
molecule metabolism, PSI-II, NYSGXRC, structural
genomics; 1.95A {Sinorhizobium meliloti 1021}
(A:140-226)
Length = 87
Score = 25.4 bits (56), Expect = 8.2
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 176 FRIKCGRLLDDDILRIVLADEIFPDC 201
F +K GR D+ D
Sbjct: 27 FYLKVGRGEKLDLEITAAVRGEIGDA 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 25.1 bits (55), Expect = 10.0
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 53 ISEYM-FTQLGKIGIPHYFIRRINMREQLVRD 83
+++ M L ++ F R + M+ + RD
Sbjct: 2 LADVMSIESLVEV----VFYRGMTMQVAVPRD 29
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.140 0.409
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,967,790
Number of extensions: 89656
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 28
Length of query: 255
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 168
Effective length of database: 2,015,014
Effective search space: 338522352
Effective search space used: 338522352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)