RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780973|ref|YP_003065386.1|
phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus
Liberibacter asiaticus str. psy62]
(255 letters)
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ssgcid,
NIH, niaid, SBRI, UW, emerald biostructures,
ATP-binding, ligase; 1.80A {Ehrlichia chaffeensis str}
Length = 263
Score = 205 bits (522), Expect = 9e-54
Identities = 97/238 (40%), Positives = 148/238 (62%)
Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60
M + +YE K KII+ L P +IQ FKD+ NN + A ++ KG+LNN IS ++ +
Sbjct: 22 MENKEKIYEGKAKIIFATLNPLEVIQHFKDEITAFNNKKAAIIHEKGILNNYISSFLMKK 81
Query: 61 LGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEF 120
L GI +FI +N REQLV+ + +IP+ + +RN AAG+ +KR I +G ++EF
Sbjct: 82 LIDKGIKTHFISLLNQREQLVKKITIIPIEVVIRNLAAGNFSKRFQIADGTPFKSPIIEF 141
Query: 121 YYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKC 180
YY D +VSE HI +F W E+E++ LS++IN+ ++ LF + I+LVDF+++
Sbjct: 142 YYKNDELSDPMVSEGHILSFQWLTNQELEKIKILSLKINNILSELFFNVGIKLVDFKLEF 201
Query: 181 GRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGI 238
G+L +D+ + LADEI PD CRLWD+S + DK R+ + ++EGY EVA +L
Sbjct: 202 GKLHNDEQSDLFLADEISPDTCRLWDISTNKRLDKDRYRLNLGNVIEGYREVAHKLNA 259
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta
structure, csgid, ligase; HET: ADP AMP CIT; 1.40A
{Clostridium perfringens atcc 13124}
Length = 238
Score = 194 bits (495), Expect = 1e-50
Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 4/236 (1%)
Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60
+ +YE K K IY + +I +KDD N + A + KGVLNN I+ +F
Sbjct: 5 VNQLEMLYEGKAKKIYATDKEDMVIVHYKDDATAFNGEKKAQIESKGVLNNEITSLIFEM 64
Query: 61 LGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEF 120
L K GI +F+ ++N R+QL + VE++PL + VRN AAGS+AKRL + EG L ++ E
Sbjct: 65 LNKEGIKTHFVEKLNDRDQLCKKVEIVPLEVIVRNVAAGSMAKRLGLEEGYELKTTVFEL 124
Query: 121 YYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKC 180
Y DS L+++ H E+ ++ ++ ++N+ + F NI L+DF+++
Sbjct: 125 SYKDDSLGDPLINDYHAVGIGATTFEELNKIYEITAKVNEILKEAFKKQNINLIDFKLEF 184
Query: 181 GRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRL 236
GR I+LADEI PD CR WD + E+ DK RF + ++ GY EV RL
Sbjct: 185 GRYNG----EILLADEISPDTCRFWDATTGEKMDKDRFRRDMGNVINGYREVLNRL 236
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
structural genomics, saicar synthetase, PSI, protein
structure initiative; 2.20A {Thermotoga maritima} SCOP:
d.143.1.1
Length = 230
Score = 186 bits (473), Expect = 4e-48
Identities = 67/233 (28%), Positives = 99/233 (42%), Gaps = 7/233 (3%)
Query: 8 YEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIP 67
YE KTKI+ + FKDD + + L GKG + + + L + GI
Sbjct: 3 YEGKTKIVKVT--GDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIK 60
Query: 68 HYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSS 127
+ + I R V ++M PL + VR AGS +R EG LP LVEF+ D
Sbjct: 61 THLVEYIPPRTLKVIPLKMFPLEVVVRLKKAGSFVRRYGGAEGEDLPVPLVEFFIKDDER 120
Query: 128 EKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDD 187
+V +H+ A + + E+M +++I + F N +L D + + G D
Sbjct: 121 HDPMVCVDHLEILGIATKKQAEKMKEAAVKITLALKEFFERANFELWDIKYEFGLDKDG- 179
Query: 188 ILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGIFK 240
+VL DEI PD RL K E DK + + L+ Y EV
Sbjct: 180 --NVVLGDEISPDTFRLRK--KGEIFDKDVYRRDLGDPLKKYREVLELCRSLN 228
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide synthetase; ADP
complex, structural genomics, NPPSFA; HET: ADP; 1.75A
{Geobacillus kaustophilus}
Length = 244
Score = 186 bits (473), Expect = 5e-48
Identities = 96/237 (40%), Positives = 134/237 (56%), Gaps = 3/237 (1%)
Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60
+ +YE K K IY EP L +KD N + AT+ GKG LNN IS +F +
Sbjct: 4 PTKQQLLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLK 63
Query: 61 LGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEF 120
L + GI ++FI +++ EQLVR V +IPL + VRN AGSLAKR+ + EG L LVEF
Sbjct: 64 LREAGIANHFIEKLSPTEQLVRRVTIIPLEVVVRNVVAGSLAKRIGLEEGTPLEAPLVEF 123
Query: 121 YYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKC 180
YY D L+ E+HI A++ EV + ++ +ND + F N++L+DF+++
Sbjct: 124 YYKNDDLGDPLLLEDHIFILKLASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEF 183
Query: 181 GRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLG 237
GR D I+LADEI PD CRLWD E+ DK F + L + Y + +RLG
Sbjct: 184 GRTADG---AILLADEISPDTCRLWDAKTNEKLDKDVFRRDLGSLTDAYEVILQRLG 237
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
2.80A {Homo sapiens}
Length = 425
Score = 183 bits (465), Expect = 4e-47
Identities = 70/248 (28%), Positives = 106/248 (42%), Gaps = 11/248 (4%)
Query: 1 MRPRNPVYEEKTKIIYE-GLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFT 59
+ +YE KTK +YE PG ++ KD N R L GK ++N+I+ +F
Sbjct: 7 LNIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQ 66
Query: 60 QLGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKR-LNIPEGLSLPRSLV 118
L + GI F R+ + EMIP+ R A GS KR + EG V
Sbjct: 67 LLQEAGIKTAFTRKCGETAFIAPQCEMIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKV 126
Query: 119 EFYYLPDSSEKTLVSEEHIT------AFNWANQSEVEEMTALSIRINDFMTGLFLGINIQ 172
E ++ D++ SEE + A Q+EV+ M+ + I + + +L N
Sbjct: 127 ELFFKDDANNDPQWSEEQLIAAKFCFAGLLIGQTEVDIMSHATQAIFEILEKSWLPQNCT 186
Query: 173 LVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEE-CDKKRFSKSNDQLLEGYSE 231
LVD +I+ G + IVLAD I D RLW + + DK+ + + EG
Sbjct: 187 LVDMKIEFGVDVTTK--EIVLADVIDNDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQM 244
Query: 232 VARRLGIF 239
V +
Sbjct: 245 VKKNFEWV 252
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer
sandwich, ligase, purine biosynthesis, structural
genomics; HET: ATP CIT; 2.03A {Methanocaldococcus
jannaschii} PDB: 2yzl_A*
Length = 242
Score = 177 bits (450), Expect = 2e-45
Identities = 79/238 (33%), Positives = 130/238 (54%), Gaps = 4/238 (1%)
Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60
+ + P+Y K K IYE ++ ++ F+DD N + GKG LN IS +F
Sbjct: 8 ILKKQPLYSGKAKSIYE-IDDDKVLIEFRDDITAGNGAKHDVKQGKGYLNALISSKLFEA 66
Query: 61 LGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEF 120
L + G+ ++I+ I R + + VE+IP+ + VRN AAGSL +R EG LP +V+F
Sbjct: 67 LEENGVKTHYIKYIEPRYMIAKKVEIIPIEVIVRNIAAGSLCRRYPFEEGKELPFPIVQF 126
Query: 121 YYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKC 180
Y D +++E+ A A + E+ ++ +++++N+ + LF I LVDF+I+
Sbjct: 127 DYKNDEYGDPMLNEDIAVALGLATREELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEI 186
Query: 181 GRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGI 238
G+ + + +++ADEI PD RLWD ++ DK F K ++ Y VA RLG+
Sbjct: 187 GKDREGN---LLVADEISPDTMRLWDKETRDVLDKDVFRKDLGDVIAKYRIVAERLGL 241
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC,
ADE2, ADE1, nucleotide complex, octahedral magnesium
coordination; HET: ADP; 2.00A {Escherichia coli} PDB:
2gqs_A*
Length = 237
Score = 176 bits (446), Expect = 6e-45
Identities = 81/238 (34%), Positives = 128/238 (53%), Gaps = 4/238 (1%)
Query: 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQ 60
M+ + +Y K K +Y P L+ F++D + R + KG++NN+ + ++ ++
Sbjct: 1 MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSK 60
Query: 61 LGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEF 120
L + GIP R ++ E LV+ ++M+P+ VRN AAGSL KRL I EG+ L L +
Sbjct: 61 LAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDL 120
Query: 121 YYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKC 180
+ D+ +V+E + F W ++ + M L+ + ND + LF + LVDF+++
Sbjct: 121 FLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKANDVLKKLFDDAGLILVDFKLEF 180
Query: 181 GRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGI 238
G +VL DE PD RLWD E+ DK RF +S L+E Y VARRLG+
Sbjct: 181 GL----YKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSLGGLIEAYEAVARRLGV 234
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase,
phosphoribosylaminoimidazolesuccinocarboxamide (saicar)
SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces
cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A*
2cnv_A* 1obg_A*
Length = 306
Score = 125 bits (315), Expect = 8e-30
Identities = 46/248 (18%), Positives = 84/248 (33%), Gaps = 36/248 (14%)
Query: 7 VYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGI 66
V K + IYE ++ GTL+ D + ++ KG+L ++SE+ F L
Sbjct: 15 VARGKVRDIYE-VDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVR 73
Query: 67 PHY---------------------FIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRL 105
H + ++ R LV ++IPL + VR GS K
Sbjct: 74 NHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSAWKEY 133
Query: 106 N---IPEGLSLPRSLVEFYYLPDSSEKTLVSEEHI---------TAFNWANQSEVEEMTA 153
GL P+ L E P+ E A + +
Sbjct: 134 VKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAELVGEDLSRRVAE 193
Query: 154 LSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEE- 212
L++++ I + D + + G + I++ + + PD R W+ + +
Sbjct: 194 LAVKLYSKCKDYAKEKGIIIADTKFEFGI-DEKTNEIILVDEVLTPDSSRFWNGASYKVG 252
Query: 213 CDKKRFSK 220
+ + K
Sbjct: 253 ESQDSYDK 260
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 36.5 bits (84), Expect = 0.006
Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 97/198 (48%)
Query: 112 SLPRSLVEFYYLPDSSE-----------------KTLVSEEHITAFNWANQSEVEEMTAL 154
SLP S++E DS E + + ++++ N S + +
Sbjct: 318 SLPPSILE-----DSLENNEGVPSPMLSISNLTQEQV--QDYVNKTN----SHLPAGKQV 366
Query: 155 SIR-IN---DF-MTG----LFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLW 205
I +N + ++G L+ G+N+ L + K LD RI P
Sbjct: 367 EISLVNGAKNLVVSGPPQSLY-GLNLTLR--KAKAPSGLDQS--RI-------P------ 408
Query: 206 DLSKKEECDKKRFS----------------KSNDQLLE--GYSEV---ARRLGIFKKNEP 244
S++ K +FS ++D + + + V A+ + I P
Sbjct: 409 -FSER----KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-----P 458
Query: 245 -----------ALKENLI 251
L ++
Sbjct: 459 VYDTFDGSDLRVLSGSIS 476
Score = 34.9 bits (80), Expect = 0.016
Identities = 35/175 (20%), Positives = 57/175 (32%), Gaps = 53/175 (30%)
Query: 88 PLLITVRNTAAGSLAKRLNIPEGLSLPRSLV--EFY-YLPDSSEKTLVSEEHITAFNWAN 144
PL ++ GSL L +P S + +F LP+ +E +++ T
Sbjct: 8 PLTLS-----HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTE-GFAADDEPT------ 55
Query: 145 QSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCC-- 202
+ E L + FLG LV+ K G D +L + L + F +C
Sbjct: 56 -TPAE----LVGK--------FLGYVSSLVEPS-KVG--QFDQVLNLCLTE--FENCYLE 97
Query: 203 ---------RLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLG--IFKKNEPAL 246
+L + K L++ Y KK+ AL
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKE-------LIKNYITARIMAKRPFDKKSNSAL 145
Score = 34.1 bits (78), Expect = 0.034
Identities = 30/148 (20%), Positives = 46/148 (31%), Gaps = 51/148 (34%)
Query: 41 ATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGS 100
A G+G N +Y F +L + Y LV D LI
Sbjct: 158 AIFGGQG--NT--DDY-FEELRDL----Y-----QTYHVLVGD------LIK-------F 190
Query: 101 LAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTA--LSIRI 158
A+ L+ L R+ +EK + + W LSI I
Sbjct: 191 SAETLS-----ELIRT-------TLDAEKVF--TQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 159 NDF-MTGLFLGINIQLVDFRIKCGRLLD 185
+ + G+ IQL + + +LL
Sbjct: 237 S-CPLIGV-----IQLAHYVVTA-KLLG 257
Score = 27.6 bits (61), Expect = 2.6
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 46/138 (33%)
Query: 28 FKDD------NLLENNPRCATLNGKGVLNNRISE-Y---MFTQL--GKIGIPHYFIRRIN 75
FKD +++ NNP T++ G RI E Y +F + GK+ F + IN
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF-KEIN 1711
Query: 76 ---------------------------MREQLVRDVE---MIPLLITVRNTAAGSLAKRL 105
M + D++ +IP T + G A
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA 1771
Query: 106 NIPEGLSLPRSLVE--FY 121
++ + +S+ SLVE FY
Sbjct: 1772 SLADVMSI-ESLVEVVFY 1788
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.1 bits (64), Expect = 0.93
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 9 EEKTKIIYEGLEPGTLI--QFFKDD---NLLENNPRCATLNGKGVLNNRISEYMFTQ 60
EE+ K + E L+ + + Q +++ +L E N R + K +NNRI++ F Q
Sbjct: 92 EEQRKRLQE-LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus,
HCMV, herpesviru packaging, DNA binding protein; 2.15A
{Human herpesvirus 5} PDB: 2kn8_A*
Length = 279
Score = 28.4 bits (63), Expect = 1.6
Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 28/124 (22%)
Query: 64 IGIPHYFIRRI---------NMREQLVRDVEMI-PLLITVRNTAAG------SLAKRLNI 107
G+ H+F+R + ++ V + P L +R G ++ I
Sbjct: 95 YGLEHFFLRDLSESSEVAIAECAAHMIISVLSLHPYLDELRIAVEGNTNQAAAVRIACLI 154
Query: 108 PEGLSLPRSL-VEFYYLPDSS-----------EKTLVSEEHITAFNWANQSEVEEMTALS 155
+ + + V FY+ PD + +K L E+ I+ FN +E+ + +
Sbjct: 155 RQSVQSSTLIRVLFYHTPDQNHIEQPFYLMGRDKALAVEQFISRFNSGYIKASQELVSYT 214
Query: 156 IRIN 159
I+++
Sbjct: 215 IKLS 218
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding
protein, protein domain packing, contractIle protein;
2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1
d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A*
3ffn_A 3ffk_A* 1rgi_G*
Length = 729
Score = 27.3 bits (60), Expect = 4.0
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 1 MRPRN-PVYEEKTKIIYEGLEPGTLIQFFK--DDNLLENNPR 39
R R P+ ++ +G EP + + +F DD+ +P
Sbjct: 684 HRDRRTPIT-----VVKQGFEPPSFVGWFLGWDDSYWSVDPL 720
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis,
LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB:
1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Length = 178
Score = 27.1 bits (60), Expect = 4.1
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 37 NPRC-ATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLVRDVEMIP 88
+C AT+ G + N K G H+ ++ + VR V M
Sbjct: 125 LGKCRATV---GEVGNG--GRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNA 172
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9284B, enolase family, PSI-2;
2.60A {Bordetella bronchiseptica}
Length = 392
Score = 26.2 bits (57), Expect = 6.7
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 176 FRIKCGRLLDDDILRIVLADEIFPDCCRLW 205
F++K G D+ + E+ L
Sbjct: 174 FKLKVGFDDARDVRNALHVRELLGAATPLM 203
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 26.2 bits (57), Expect = 8.4
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 206 DLSKKEECDKKRFSK---SNDQLLEGYSEVARRLGIFKKNEPALKEN 249
+ K + K++ SK ++ L+ + +L +K EP L E+
Sbjct: 56 ENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNED 102
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.140 0.409
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,256,820
Number of extensions: 105829
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 21
Length of query: 255
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 165
Effective length of database: 3,511,270
Effective search space: 579359550
Effective search space used: 579359550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)