RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780973|ref|YP_003065386.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62] (255 letters) >d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId: 2336]} Length = 224 Score = 159 bits (404), Expect = 2e-40 Identities = 64/228 (28%), Positives = 97/228 (42%), Gaps = 7/228 (3%) Query: 12 TKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFI 71 TKI+ + + FKDD + + L GKG + + + L + GI + + Sbjct: 1 TKIVK--VTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIKTHLV 58 Query: 72 RRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTL 131 I R V ++M PL + VR AGS +R EG LP LVEF+ D + Sbjct: 59 EYIPPRTLKVIPLKMFPLEVVVRLKKAGSFVRRYGGAEGEDLPVPLVEFFIKDDERHDPM 118 Query: 132 VSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRI 191 V +H+ A + + E+M +++I + F N +L D + + G D + Sbjct: 119 VCVDHLEILGIATKKQAEKMKEAAVKITLALKEFFERANFELWDIKYEFGLDKDG---NV 175 Query: 192 VLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGIF 239 VL DEI PD RL K E DK + + L+ Y EV Sbjct: 176 VLGDEISPDTFRLRK--KGEIFDKDVYRRDLGDPLKKYREVLELCRSL 221 >d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 304 Score = 123 bits (309), Expect = 2e-29 Identities = 48/248 (19%), Positives = 84/248 (33%), Gaps = 36/248 (14%) Query: 7 VYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGI 66 V K + IYE ++ GTL+ D + ++ KG+L ++SE+ F L Sbjct: 14 VARGKVRDIYE-VDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVR 72 Query: 67 PHY---------------------FIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRL 105 H + ++ R LV ++IPL + VR GS K Sbjct: 73 NHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSAWKEY 132 Query: 106 N---IPEGLSLPRSLVEFYYLPDSSEKTLVSEEHI---------TAFNWANQSEVEEMTA 153 GL P+ L E P+ E A + + Sbjct: 133 VKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAELVGEDLSRRVAE 192 Query: 154 LSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDL-SKKEE 212 L++++ I + D + + G + I++ + + PD R W+ S K Sbjct: 193 LAVKLYSKCKDYAKEKGIIIADTKFEFGI-DEKTNEIILVDEVLTPDSSRFWNGASYKVG 251 Query: 213 CDKKRFSK 220 + + K Sbjct: 252 ESQDSYDK 259 >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 252 Score = 26.0 bits (56), Expect = 3.5 Identities = 8/31 (25%), Positives = 12/31 (38%) Query: 176 FRIKCGRLLDDDILRIVLADEIFPDCCRLWD 206 ++K G + DDI R LA + Sbjct: 34 IKLKVGANVQDDIRRCRLARAAIGPDIAMAV 64 >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 221 Score = 25.1 bits (54), Expect = 5.2 Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%) Query: 176 FRIKCGRL-LDDDILRIVLADEIFPD 200 +++ G D + + L E PD Sbjct: 31 AKVRVGLYEAVRDGMVVNLLLEAIPD 56 >d1tj1a1 a.176.1.1 (A:89-261) N-terminal domain of bifunctional PutA protein {Escherichia coli [TaxId: 562]} Length = 173 Score = 24.4 bits (53), Expect = 8.6 Identities = 9/38 (23%), Positives = 18/38 (47%) Query: 105 LNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNW 142 L+ EG++L +PD + + + + I+ NW Sbjct: 69 LSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNW 106 >d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Score = 24.7 bits (54), Expect = 8.8 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 6/45 (13%) Query: 209 KKEECDK-----KRFSKSNDQLLEGYSEVARRLGIFKKNEPALKE 248 KK +C + K+F ++ E + +VA ++GI + + P L + Sbjct: 77 KKNQCKEGLDIYKKFLTRMTRISE-FLKVAEQVGIDRGDIPDLSQ 120 >d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133 Score = 24.7 bits (54), Expect = 9.0 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Query: 209 KKEECDK-----KRFSKSNDQLLEGYSEVARRLGIFKKNEPALKE 248 K+ K+F D++ E + +VA +GI K + P L + Sbjct: 74 NKKHARDALDLYKKFLVRMDRVGE-FLKVAENVGIDKGDIPDLTK 117 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.140 0.409 Gapped Lambda K H 0.267 0.0555 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 976,800 Number of extensions: 46538 Number of successful extensions: 85 Number of sequences better than 10.0: 1 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 10 Length of query: 255 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,268,006 Effective search space: 218097032 Effective search space used: 218097032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.2 bits)