RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780973|ref|YP_003065386.1|
phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus
Liberibacter asiaticus str. psy62]
         (255 letters)



>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId:
           2336]}
          Length = 224

 Score =  159 bits (404), Expect = 2e-40
 Identities = 64/228 (28%), Positives = 97/228 (42%), Gaps = 7/228 (3%)

Query: 12  TKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFI 71
           TKI+   +     +  FKDD    +  +   L GKG +    +  +   L + GI  + +
Sbjct: 1   TKIVK--VTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIKTHLV 58

Query: 72  RRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTL 131
             I  R   V  ++M PL + VR   AGS  +R    EG  LP  LVEF+   D     +
Sbjct: 59  EYIPPRTLKVIPLKMFPLEVVVRLKKAGSFVRRYGGAEGEDLPVPLVEFFIKDDERHDPM 118

Query: 132 VSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRI 191
           V  +H+     A + + E+M   +++I   +   F   N +L D + + G   D     +
Sbjct: 119 VCVDHLEILGIATKKQAEKMKEAAVKITLALKEFFERANFELWDIKYEFGLDKDG---NV 175

Query: 192 VLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGIF 239
           VL DEI PD  RL    K E  DK  + +     L+ Y EV       
Sbjct: 176 VLGDEISPDTFRLRK--KGEIFDKDVYRRDLGDPLKKYREVLELCRSL 221


>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 304

 Score =  123 bits (309), Expect = 2e-29
 Identities = 48/248 (19%), Positives = 84/248 (33%), Gaps = 36/248 (14%)

Query: 7   VYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGI 66
           V   K + IYE ++ GTL+    D     +     ++  KG+L  ++SE+ F  L     
Sbjct: 14  VARGKVRDIYE-VDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVR 72

Query: 67  PHY---------------------FIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRL 105
            H                      +  ++  R  LV   ++IPL + VR    GS  K  
Sbjct: 73  NHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSAWKEY 132

Query: 106 N---IPEGLSLPRSLVEFYYLPDSSEKTLVSEEHI---------TAFNWANQSEVEEMTA 153
                  GL  P+ L E    P+         E            A     +     +  
Sbjct: 133 VKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAELVGEDLSRRVAE 192

Query: 154 LSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDL-SKKEE 212
           L++++            I + D + + G   +     I++ + + PD  R W+  S K  
Sbjct: 193 LAVKLYSKCKDYAKEKGIIIADTKFEFGI-DEKTNEIILVDEVLTPDSSRFWNGASYKVG 251

Query: 213 CDKKRFSK 220
             +  + K
Sbjct: 252 ESQDSYDK 259


>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas
           campestris pv. campestris [TaxId: 340]}
          Length = 252

 Score = 26.0 bits (56), Expect = 3.5
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 176 FRIKCGRLLDDDILRIVLADEIFPDCCRLWD 206
            ++K G  + DDI R  LA         +  
Sbjct: 34  IKLKVGANVQDDIRRCRLARAAIGPDIAMAV 64


>d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 221

 Score = 25.1 bits (54), Expect = 5.2
 Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 176 FRIKCGRL-LDDDILRIVLADEIFPD 200
            +++ G      D + + L  E  PD
Sbjct: 31  AKVRVGLYEAVRDGMVVNLLLEAIPD 56


>d1tj1a1 a.176.1.1 (A:89-261) N-terminal domain of bifunctional PutA
           protein {Escherichia coli [TaxId: 562]}
          Length = 173

 Score = 24.4 bits (53), Expect = 8.6
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 105 LNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNW 142
           L+  EG++L         +PD + +  +  + I+  NW
Sbjct: 69  LSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNW 106


>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid
           leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 132

 Score = 24.7 bits (54), Expect = 8.8
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 209 KKEECDK-----KRFSKSNDQLLEGYSEVARRLGIFKKNEPALKE 248
           KK +C +     K+F     ++ E + +VA ++GI + + P L +
Sbjct: 77  KKNQCKEGLDIYKKFLTRMTRISE-FLKVAEQVGIDRGDIPDLSQ 120


>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 133

 Score = 24.7 bits (54), Expect = 9.0
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 209 KKEECDK-----KRFSKSNDQLLEGYSEVARRLGIFKKNEPALKE 248
            K+         K+F    D++ E + +VA  +GI K + P L +
Sbjct: 74  NKKHARDALDLYKKFLVRMDRVGE-FLKVAENVGIDKGDIPDLTK 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0555    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 976,800
Number of extensions: 46538
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 10
Length of query: 255
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,268,006
Effective search space: 218097032
Effective search space used: 218097032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)