RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62] (435 letters) >gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). Length = 387 Score = 624 bits (1613), Expect = e-179 Identities = 242/427 (56%), Positives = 311/427 (72%), Gaps = 40/427 (9%) Query: 4 RYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIM 63 RY R M +WS E KFR W E+EA C+A AKLGVIP ++++ I +K A F+V+R+ Sbjct: 1 RYGRPEMKKIWSEENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKK---AKFDVERVK 57 Query: 64 ELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQL 123 E+++ KHDVIAF+T +AE G R+IH G+TSSD++DT ++QL + DI+L+D+ +L Sbjct: 58 EIEAETKHDVIAFVTAIAEYCGEAGRYIHFGLTSSDVVDTALALQLREALDIILKDLKEL 117 Query: 124 LESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAI 183 LE LKK+A E+KDT+ +GR+HGIHAEPTTFGLK A+ YAEF R +RL ARE I V I Sbjct: 118 LEVLKKKALEHKDTVMVGRTHGIHAEPTTFGLKFALWYAEFKRHLERLKEARERILVGKI 177 Query: 184 SGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATEI 243 SG+VGT++N+ P VE+ VA+ +GLK +PIS+QVI RDRHA Y S L +IAS++E++ATEI Sbjct: 178 SGAVGTYANLGPEVEERVAEKLGLKPEPISTQVIQRDRHAEYLSTLALIASTLEKIATEI 237 Query: 244 RHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHE 303 RHLQRTE+LEVEE F GQKGSS+MPHKRNPIL+EN+ GL+R+IRS+VIPA+ENVALWHE Sbjct: 238 RHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVIRSNVIPALENVALWHE 297 Query: 304 RDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLA 363 RDISHSSVERVI PDATI LD+ L R+ V+E LVVYPENM+ NL KGLI SQR+LLA Sbjct: 298 RDISHSSVERVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLA 357 Query: 364 LTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423 L + G+SREEAY++VQR +Y+ KH Sbjct: 358 LVEKGMSREEAYEIVQR-------------------------------------EYYLKH 380 Query: 424 VNAIFER 430 V+ IF+R Sbjct: 381 VDEIFKR 387 >gnl|CDD|30365 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism]. Length = 438 Score = 516 bits (1331), Expect = e-147 Identities = 208/437 (47%), Positives = 288/437 (65%), Gaps = 4/437 (0%) Query: 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVD 60 + RYS M ++S E K R W ++EA A A+LGVIP +++ I A F+++ Sbjct: 1 LDGRYSSPEMRAIFSEEAKLRAWLKVEAALARAQAELGVIPAEAAAEIDAAAAFAEFDLE 60 Query: 61 RIMELDSIIKHDVIAFLTHLAEIIGPDA-RFIHQGMTSSDILDTCFSIQLMRSTDILLED 119 RI E+++ HDV A + LAE +G +A ++H G TS DI+DT ++QL + D++L D Sbjct: 61 RIKEIEAETGHDVKALVRALAEKVGEEASEYVHFGATSQDIIDTALALQLKEALDLILPD 120 Query: 120 IDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIA 179 + +L+E+L + A E+KDT +GR+HG AEPTTFG K A AE R +RL A E I Sbjct: 121 LKRLIEALAELALEHKDTPMLGRTHGQPAEPTTFGKKFANWLAELLRHLERLEEAEERII 180 Query: 180 VCAISGSVGTFSNIHP---YVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSI 236 V I G+VGT + + VE+ VA+ +GLK PIS+QV RDR A +FS L ++A S+ Sbjct: 181 VGKIGGAVGTLAALGDLGAEVEERVAEKLGLKPAPISTQVSPRDRIAEFFSALALLAGSL 240 Query: 237 ERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAME 296 E+ A +IR LQRTE+ EVEE F GQ GSS+MPHKRNPI +EN+TGL+R+ R+ V +E Sbjct: 241 EKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLE 300 Query: 297 NVALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIH 356 N+ LWHERD++ SSVERVI PDA I D ALNRL NV+E L V PE M+ NL+ GLI Sbjct: 301 NLVLWHERDLTDSSVERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIA 360 Query: 357 SQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFD 416 S+R++LAL + G+ REEA++LV+ AMK W+ G FL++LLAD + K LSE+E+ + D Sbjct: 361 SERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELLLADERVTKYLSEEELLELLD 420 Query: 417 YKYHTKHVNAIFERVFQ 433 + + I ERV + Sbjct: 421 PANYLGRADEIVERVVK 437 >gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 381 Score = 496 bits (1279), Expect = e-141 Identities = 183/375 (48%), Positives = 257/375 (68%), Gaps = 4/375 (1%) Query: 10 MTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSII 69 M ++S E K R W ++EA +A A+LG+IP+++++ I + +RI E++ Sbjct: 1 MRAIFSEENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAERIAEIEKET 60 Query: 70 KHDVIAFLTHLAEIIGPDA-RFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLK 128 HDVIAF+ LAE G DA ++H G TS DI DT ++QL + DI+L D+D L+++L Sbjct: 61 GHDVIAFVYALAEKCGEDAGEYVHFGATSQDINDTALALQLRDALDIILPDLDALIDALA 120 Query: 129 KRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVG 188 K A E+KDT +GR+HG HA PTTFG K A+ AE R +RL ARE + V ISG+VG Sbjct: 121 KLALEHKDTPMLGRTHGQHALPTTFGKKFAVWAAELLRHLERLEEARERVLVGGISGAVG 180 Query: 189 TFSNIHPY---VEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATEIRH 245 T +++ P VE+ VA+ +GLK PI++Q+ RDR A S L +IA ++E++AT+IR Sbjct: 181 THASLGPKGPEVEERVAEKLGLKVPPITTQIEPRDRIAELLSALALIAGTLEKIATDIRL 240 Query: 246 LQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERD 305 LQRTEI EVEE F GQ GSS+MPHKRNPI +EN+ GL+RL+R+ PA+EN+ WHERD Sbjct: 241 LQRTEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENLVQWHERD 300 Query: 306 ISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALT 365 +S SSVER I PDA + LD AL+RL+ ++E LVV PE M+ NL+ GLI S+ +++AL Sbjct: 301 LSDSSVERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALA 360 Query: 366 QAGVSREEAYQLVQR 380 + G+ R+EAY+LV+ Sbjct: 361 KKGLGRQEAYELVKE 375 >gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Length = 325 Score = 309 bits (795), Expect = 7e-85 Identities = 108/326 (33%), Positives = 170/326 (52%), Gaps = 6/326 (1%) Query: 20 FRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNV-DRIMELDSIIKHDVIAFLT 78 R ++E ALA+LG++P+++++ I + + +E + HDV+A Sbjct: 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEE 60 Query: 79 HLAEIIGPD-ARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDT 137 LAE G ++H G +S+DI+DT + L + DILL + L+++L +A E+KDT Sbjct: 61 VLAERAGELNGGYVHTGRSSNDIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDT 120 Query: 138 LTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAI-SGSVGTFSNIHPY 196 + GR+H A+PTT G +LA AE R +RL A + + V + G+VGT +N P Sbjct: 121 VMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLNVLPLGGGAVGTGANAPPI 180 Query: 197 VEQHVADAMGL-KTDPISSQVIA-RDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEV 254 + VA+ +G P S+Q ++ RD S L ++A S+ ++A ++R L E EV Sbjct: 181 DRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEV 240 Query: 255 EEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERV 314 E Q GSS MP K NP++ E + GL+ + ++ +E + D S VER Sbjct: 241 ELPDAK-QPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDNVDSPVERE 299 Query: 315 IGPDATIHLDFALNRLKNVIEELVVY 340 PD+ LD AL L V+E L V Sbjct: 300 ALPDSFDLLDAALRLLTGVLEGLEVN 325 >gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms. Length = 437 Score = 302 bits (776), Expect = 1e-82 Identities = 129/411 (31%), Positives = 216/411 (52%), Gaps = 6/411 (1%) Query: 10 MTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSII 69 M ++S E + + ++EA A A+LGVIP++++ I +++ + E + Sbjct: 11 MREIFSDENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADVERLDLEALAEATART 70 Query: 70 KHDVIAFLTHLAEIIGPDA-RFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLK 128 H I + L G A ++H G T+ DI+DT +QL + D+L D+D LL++L Sbjct: 71 GHPAIPLVKQLTAACGDAAGEYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALA 130 Query: 129 KRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVG 188 + A ++DT +GR+H HA P TFGLK+A+ +E R R+RL R + V G+ G Sbjct: 131 RLAATHRDTPMVGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGGAAG 190 Query: 189 TFS---NIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATEIRH 245 T + + V++ +A +GL I ARDR A S L ++ ++ ++A ++ Sbjct: 191 TLASLGDQGLAVQEALAAELGLGVPAIPWHT-ARDRIAELASFLALLTGTLGKIARDVYL 249 Query: 246 LQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERD 305 L +TEI EV E F G+ GSS+MPHKRNP+ E + L+R + ++ + HERD Sbjct: 250 LMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALARRVPGLAALLLDAMVQEHERD 309 Query: 306 ISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALT 365 E + P+ + AL + + ++ L V + M+ NL+ GLI S+ +++AL Sbjct: 310 AGAWHAEWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALA 369 Query: 366 QAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFD 416 + R+EA+ LV M+ + G +VLL D ++ LS++E+ D Sbjct: 370 PK-LGRQEAHDLVYEACMRAVEEGRPLREVLLEDPEVAAYLSDEELDALLD 419 >gnl|CDD|37911 KOG2700, KOG2700, KOG2700, Adenylosuccinate lyase [Nucleotide transport and metabolism]. Length = 481 Score = 249 bits (637), Expect = 1e-66 Identities = 116/445 (26%), Positives = 211/445 (47%), Gaps = 21/445 (4%) Query: 6 SRTTMTTLWSLETKFRIW--FEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIM 63 S + + ++S KF W + + L I +++ + + + + Sbjct: 16 SISELNPIFSDRNKFSTWRRLWLWLAEAEKELGLTTITKEAIEEMKSSRDIENIDFTALS 75 Query: 64 ELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQL 123 + +HDV+A + E+ A IH G TS + D I+L ++ ++L + + Sbjct: 76 PEEGRYRHDVMAHVHSFGELCPIAAGIIHLGATSCFVTDNADLIELRDASKLILPYLAGV 135 Query: 124 LESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAI 183 ++ L + A +YK+ T+GR+H A+ TTFG ++ + E R +R AR ++ + Sbjct: 136 IDRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRARTDVRFRGL 195 Query: 184 SGSVGTFSNIHPYVE----------QHVADAMGLKTDPI-SSQVIARDRHAMYFSVLGVI 232 G+ GT ++ V +G I + Q +R A + L + Sbjct: 196 KGATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVTGQTYSRKTDAEEVAPLASL 255 Query: 233 ASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVI 292 ++ + AT+IR L + EVEE F Q GSS+MP+KRNP+ E +T L+R +R +V Sbjct: 256 GATAHKYATDIRLLAK--FAEVEEPFEAHQIGSSAMPYKRNPMRCERITSLARHLRPYVT 313 Query: 293 PAMENVA-LWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQL 351 A+ + WHER + S+ R++ PDA + D L L N++E LVVYP+ ++ N+ Sbjct: 314 QALNTASVQWHERTLDDSANRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIERNIRDE 373 Query: 352 KGLIHSQRILLALTQAGVSREEAYQLVQR----NAMKVWKNGAIFLDVLLADVDIRKVLS 407 + + I++AL +AG+SR+EA++ +++ A V + G + A D Sbjct: 374 LPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQAAQVVKQEGGDNDLIERAKEDPTFKPV 433 Query: 408 EKEICDKFD-YKYHTKHVNAIFERV 431 ++E+ D + + V+ I + V Sbjct: 434 KEELDSLLDPLNFTGRAVDQIEKFV 458 >gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 436 Score = 191 bits (487), Expect = 3e-49 Identities = 107/393 (27%), Positives = 190/393 (48%), Gaps = 17/393 (4%) Query: 4 RYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRN-AVFNVDRI 62 RY+ M ++S KF W ++ +A +LG+ + S + I E N + + Sbjct: 4 RYASKEMVYIFSPRKKFSTWRKLWLWLAEAEKELGL--DISDEQIEEMKANVENIDFEIA 61 Query: 63 MELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQ 122 + ++HDV+A + + A IH G TS + D IQ+ + D++L + Sbjct: 62 AAEEKKLRHDVMAHVHAFGLLCPAAAGIIHLGATSCFVTDNTDLIQIRDALDLILPKLAA 121 Query: 123 LLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCA 182 +++ L + A EYKD T+G +H A+ TT G + + + + L R+++ Sbjct: 122 VIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLRDDLRFRG 181 Query: 183 ISGSVGT-------FSNIHPYVEQ---HVADAMGLKTD-PISSQVIARDRHAMYFSVLGV 231 + G+ GT F H VE V G K P++ Q +R + L Sbjct: 182 VKGTTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVDIDVLNALSS 241 Query: 232 IASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHV 291 + ++ ++AT+IR L + EVEE F GQ GSS+MP+KRNP+ +E L+R + + Sbjct: 242 LGATAHKIATDIRLLANLK--EVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLA 299 Query: 292 I-PAMENVALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQ 350 A W ER + S+ R+ P+A + D L L+N+ E LVVYP+ ++ ++ Q Sbjct: 300 SNAAQTASTQWFERTLDDSANRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQ 359 Query: 351 LKGLIHSQRILLALTQAGVSREEAYQLVQRNAM 383 + ++ I++A +AG R++A++ ++ + Sbjct: 360 ELPFMATENIIMAAVKAGGDRQDAHERIRVLSH 392 >gnl|CDD|143963 pfam00206, Lyase_1, Lyase. Length = 312 Score = 179 bits (455), Expect = 2e-45 Identities = 75/293 (25%), Positives = 121/293 (41%), Gaps = 23/293 (7%) Query: 15 SLETKFRIWFEIE---AHACDALAKLGVIPEKSSKNIWEKGRNAV---FNVDRIMELDSI 68 FR+ E A A AK V+ ++ + I K + V D L I Sbjct: 17 RSRFNFRLSEEDIKGLAALKKAAAKANVLLKEEAAAI-IKALDEVAEEGKADDAFVLKVI 75 Query: 69 IKHDVIAFLTHLAEIIGPD-------ARFIHQGMTSSDILDTCFSIQLMRS-TDILLEDI 120 + A +L E+IG +H G +S+D + T + L + +++LL + Sbjct: 76 QEGSGTAVNMNLNEVIGELLGQLVHPNDKVHTGQSSNDQVPTALRLALKLALSEVLLPAL 135 Query: 121 DQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAV 180 QL+++LK++A E+ D + GR+H A P T G +L+ +R +RL I V Sbjct: 136 GQLIDALKEKAKEFADVVKPGRTHLQDATPVTLGQELSGYAVALTRDLERLKQLLPRILV 195 Query: 181 CAISGS--VGTFSNIHPYVEQHVA------DAMGLKTDPISSQVIARDRHAMYFSVLGVI 232 + G VGT N P + +A + + RD + L ++ Sbjct: 196 EPLGGGTAVGTGLNADPEFAELLAKELGFFTGLPVPAPNSFEATSDRDAVVEFSGALALL 255 Query: 233 ASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSR 285 A+ + + A ++R L VE G+ GSS MP K NP E L G + Sbjct: 256 ATHLSKFANDLRLLSSGPFGFVELSLAEGEPGSSIMPGKVNPDQLELLRGKAG 308 >gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respectively. Length = 231 Score = 177 bits (452), Expect = 4e-45 Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 52/257 (20%) Query: 80 LAEIIGPDARFIHQ------GMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFE 133 LA G A +H G +S+DI T + L + D LL + L+++L +A Sbjct: 20 LAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEA 79 Query: 134 YKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNI 193 +K T+ GR+H A+P T G +L R +RL A Sbjct: 80 HKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERLEEAA------------------ 121 Query: 194 HPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILE 253 A L + A+ + ++A ++R L E E Sbjct: 122 ----------------------------VAEALDALALAAAHLSKIAEDLRLLLSGEFGE 153 Query: 254 VEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVER 313 + E F PGQ GSS MP K NP+ E + GL+ L+ +++ + + ERD S R Sbjct: 154 LGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGGPERDNEDSPSMR 213 Query: 314 VIGPDATIHLDFALNRL 330 I D+ + L AL L Sbjct: 214 EILADSLLLLIDALRLL 230 >gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). Length = 425 Score = 105 bits (263), Expect = 3e-23 Identities = 101/372 (27%), Positives = 163/372 (43%), Gaps = 65/372 (17%) Query: 19 KFRIWFEIEAHACDALAKLGVIPEKS--SKNIWEKGRNAVFN-----VDRIMELDSIIKH 71 K+R+ ++E AL+ L IPE +K + R + N RI E+++ H Sbjct: 12 KYRV--QVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKEIEATTNH 69 Query: 72 DVIA---FLT---HLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRS---TDILLEDIDQ 122 DV A FL ++ FIH TS DI + + LM +++L + + Sbjct: 70 DVKAVEYFLKEKFETLGLLKKIKEFIHFACTSEDINNL--AYALMIKEARNEVILPLLKE 127 Query: 123 LLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCA 182 +++SLKK A EY D + R+HG A PTT G +LA+ R K+L ++I + Sbjct: 128 IIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVFVYRLERQYKQL----KQIEILG 183 Query: 183 -ISGSVGTFSNIH----PYVEQHVADA-----MGLKTDPISSQVIARDRHAMYFSVLGVI 232 +G+VG F N H P V+ +GL +P ++Q+ D A F L I Sbjct: 184 KFNGAVGNF-NAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTTQIEPHDYIAELFDALARI 242 Query: 233 ASSIERVATEI------RHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTG---- 282 + + + +I + ++ G+ GSS+MPHK NPI EN G Sbjct: 243 NTILIDLCRDIWGYISLGYFKQKVK--------KGEVGSSTMPHKVNPIDFENAEGNLGL 294 Query: 283 ----LSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELV 338 L+ L I + +RD++ S+V R IG A H A L +++L Sbjct: 295 SNALLNHLSAKLPISRL-------QRDLTDSTVLRNIGV-AFGHSLIAYKSLLRGLDKLE 346 Query: 339 VYPENMKDNLEQ 350 + + ++L+ Sbjct: 347 LNEARLLEDLDA 358 >gnl|CDD|30514 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism]. Length = 459 Score = 100 bits (250), Expect = 8e-22 Identities = 101/413 (24%), Positives = 173/413 (41%), Gaps = 38/413 (9%) Query: 28 AHACDALAKLGVIPEKSSKNI-------WEKGRNAVFNVDRIMELDSIIKHDV-IAFLTH 79 AHA LAK G+I E+ + I E+ R F +D E DV A Sbjct: 41 AHAK-MLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDPDDE-------DVHTAIEAR 92 Query: 80 LAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLT 139 L E IG +H G + +D + T + L LLE I L ++L A E+ +T+ Sbjct: 93 LIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLDLAEEHAETVM 152 Query: 140 IGRSHGIHAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVE 198 G +H A+P TF L +AYAE +R +RL A + + V + + P Sbjct: 153 PGYTHLQRAQPVTFAHHL-LAYAEMLARDIERLRDALKRVNVSPLGAGALAGTPF-PIDR 210 Query: 199 QHVADAMGLKT---DPISSQVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVE 255 + A+ +G + + + V RD + S +I + R+A ++ E +E Sbjct: 211 ERTAELLGFDAVTRNSLDA-VSDRDFILEFLSAAALIMVHLSRLAEDLILWSSPEFGFIE 269 Query: 256 ---EFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIP---AMENVALWHERDISHS 309 EF GSS MP K+NP + E + G + + + M+ + L + RD+ Sbjct: 270 LPDEF----STGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLAYNRDLQED 325 Query: 310 SVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGV 369 E + D+ L+ +L L ++ L V E M++ E G + + L + GV Sbjct: 326 K-EPLF--DSVDTLEDSLRVLAGMVSGLTVNKERMREAAEA--GFSTATDLADYLVRKGV 380 Query: 370 SREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTK 422 EA+++V + + G D+ L ++ L ++++ + + Sbjct: 381 PFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVYEVLTPEESVA 433 >gnl|CDD|31230 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and metabolism]. Length = 471 Score = 82.2 bits (203), Expect = 3e-16 Identities = 84/378 (22%), Positives = 149/378 (39%), Gaps = 67/378 (17%) Query: 7 RTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNI------WEKGR-NAVFNV 59 + + + R ++ A A +LG +P++ + I G+ + F V Sbjct: 34 PISGLKISDVPEFIRAMAMVKKAAALANKELGALPKEIADAIVKACDEILDGKCHDQFVV 93 Query: 60 DRI---------MELDSIIKHDVIAFLTHLA---EIIGPDARFIHQGMTSS--DILDTCF 105 D M + +I + + L H + + P+ H M+ S D T F Sbjct: 94 DVYQGGAGTSTNMNANEVIANRALELLGHEKGEYQYLHPND---HVNMSQSTNDAYPTAF 150 Query: 106 SIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFS 165 I + +S L++ ++ L+E+ +++A E+ D L +GR+ A P T G + Sbjct: 151 RIAVYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALK 210 Query: 166 RSRKRLLTAREEIAVCAISGS-VGTFSNIHP-YVEQ---HVADAMGLKTDPISSQVIAR- 219 KR+ A E + + G+ +GT N Y+E +A+ GL P + + A Sbjct: 211 EDIKRIYRAAELLLEVNLGGTAIGTGINAPKGYIELVVKKLAEVTGLPLVPAENLIEATQ 270 Query: 220 --DRHAMYFSVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNP 274 M L +A + ++ ++R L R + E+ Q GSS MP K NP Sbjct: 271 DTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEIN--LPAVQAGSSIMPGKVNP 328 Query: 275 ILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDATIHLDFALNRLK-NV 333 VIP + N + VIG D TI + +L+ NV Sbjct: 329 ----------------VIPEVVN-------QVCFK----VIGNDTTITMAAEAGQLQLNV 361 Query: 334 IEELVVYPENMKDNLEQL 351 +E ++ Y + +++ L Sbjct: 362 MEPVIAY--ALFESISIL 377 >gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication. In humans, mutations in ASAL result in the autosomal recessive disorder argininosuccinic aciduria. Length = 435 Score = 79.9 bits (198), Expect = 1e-15 Identities = 101/381 (26%), Positives = 162/381 (42%), Gaps = 86/381 (22%) Query: 15 SLETKFRIWFEI----EAHACDALAKLGVIPEKSSKNI----------WEKGRNAVFNVD 60 S+ R++ E AHA LA+ G++ E+ + I E G F +D Sbjct: 1 SISFDRRLFEEDIAGSIAHA-VMLAEQGILTEEEAAKILAGLAKIRAEIEAGA---FELD 56 Query: 61 RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDI 120 E + I +A L E IG +H G + +D + T + L + LLE + Sbjct: 57 --PEDEDI----HMAIERRLIERIGDVGGKLHTGRSRNDQVATDLRLYLRDALLELLELL 110 Query: 121 DQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIA 179 L +L RA E+ DT+ G +H A+P TFG L +AYAE R +RL A + + Sbjct: 111 LDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYL-LAYAEMLERDLERLADAYKRVN 169 Query: 180 VC-----AISGSVGTFSNIHPYVEQHVADAMGLKT------DPISSQVIARDRHAMYFSV 228 V A++G+ TF I + A+ +G D +S RD + S Sbjct: 170 VSPLGAGALAGT--TF-PIDR---ERTAELLGFDGPTENSLDAVSD----RDFVLEFLSA 219 Query: 229 LGVIASSIERVATEIRHLQRTE---ILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSR 285 ++ + R+A ++ L T+ +E+ + + GSS MP K+NP + E Sbjct: 220 AALLMVHLSRLAEDL-ILWSTQEFGFVELPDAY---STGSSIMPQKKNPDVLE------- 268 Query: 286 LIR---SHVIPA-------MENVALWHERDISHS------SVERVIGPDATIHLDFALNR 329 LIR VI A ++ + L + +D+ +V+ +I A++ L Sbjct: 269 LIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQEDKEPLFDAVDTLI---ASLRL------ 319 Query: 330 LKNVIEELVVYPENMKDNLEQ 350 L VI L V PE M++ E Sbjct: 320 LTGVISTLTVNPERMREAAEA 340 >gnl|CDD|30463 COG0114, FumC, Fumarase [Energy production and conversion]. Length = 462 Score = 71.4 bits (175), Expect = 5e-13 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 14/203 (6%) Query: 91 IHQGMTSSDILDTCFSIQ-LMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAE 149 ++ +S+D T I ++ + L+ + L+++L +A E+ D + IGR+H A Sbjct: 133 VNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDAT 192 Query: 150 PTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGS-VGTFSNIHPYVEQHVADAMGLK 208 P T G + + A+ + +R+ + + AI G+ VGT N HP + VA+ + Sbjct: 193 PLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAHPEFGEKVAEELAEL 252 Query: 209 TD-PISS------QVIARDRHAMYFSVLGVIASSIERVATEIRHLQ---RTEILEVEEFF 258 T P + + A D L +A S+ ++A +IR L R + E+E Sbjct: 253 TGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIE--L 310 Query: 259 HPGQKGSSSMPHKRNPILTENLT 281 + GSS MP K NP E LT Sbjct: 311 PENEPGSSIMPGKVNPTQCEALT 333 >gnl|CDD|36531 KOG1317, KOG1317, KOG1317, Fumarase [Energy production and conversion]. Length = 487 Score = 67.4 bits (164), Expect = 8e-12 Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 17/246 (6%) Query: 48 IWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHL--AEIIGPDARFIHQGMTSSDILDTCF 105 +W+ G N M + +I + I L ++ + P+ +++ +S+D T Sbjct: 118 VWQTGSGTQSN----MNANEVISNRAIEILGGKLGSKKVHPNDH-VNKSQSSNDTFPTAM 172 Query: 106 SIQL-MRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEF 164 I L+ + L ++L+ ++ E+KD + IGR+H A P T G + + + Sbjct: 173 HIAAATEINSRLIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQV 232 Query: 165 SRSRKRLLTAREEIAVCAISGS-VGTFSNIHP----YVEQHVADAMGLK--TDPISSQVI 217 + +R+ + A G+ VGT N + VA+ GL T P + + Sbjct: 233 TNGLQRVAATLPRLYQLAQGGTAVGTGLNTRKGFAEKIAARVAELTGLPFVTAPNKFEAL 292 Query: 218 A-RDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHP-GQKGSSSMPHKRNPI 275 A D L IA S+ ++A +IR L + E P + GSS MP K NP Sbjct: 293 AAHDAMVEVSGALNTIAVSLMKIANDIRFLGSGPRCGLGELMLPENEPGSSIMPGKVNPT 352 Query: 276 LTENLT 281 E +T Sbjct: 353 QCEAMT 358 >gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Length = 450 Score = 67.2 bits (165), Expect = 1e-11 Identities = 69/257 (26%), Positives = 107/257 (41%), Gaps = 47/257 (18%) Query: 99 DILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLA 158 D+ T + L+ LL+ + L E+ + +A E+ D L +GR+ A P T G + Sbjct: 138 DVYPTALRLALILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQEFG 197 Query: 159 MAYAE-FSRSRKRLLTAREEIAVCAISGS-VGTFSNIHP----YVEQHVADAMGLK---- 208 AYA R R R+ ARE + + G+ +GT N P V + +++ GL Sbjct: 198 -AYATALKRDRARIYKARERLREVNLGGTAIGTGINAPPGYIELVVEKLSEITGLPLKRA 256 Query: 209 TDPISSQVIARDRHAMYFSVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGS 265 + I + D L +A + ++A ++R L R + E+ Q GS Sbjct: 257 ENLIDATQNT-DAFVEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEIN--LPAVQPGS 313 Query: 266 SSMPHKRNPILTENLTGLSRLIRSHVIPAMEN-VALWHERDISHSSVERVIGPDATIHLD 324 S MP K NP VIP + N VA +VIG D TI + Sbjct: 314 SIMPGKVNP----------------VIPEVVNQVAF------------QVIGNDLTITMA 345 Query: 325 FALNRLK-NVIEELVVY 340 +L+ NV E ++ Y Sbjct: 346 AEAGQLELNVFEPVIAY 362 >gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle. Length = 450 Score = 65.9 bits (162), Expect = 2e-11 Identities = 62/220 (28%), Positives = 91/220 (41%), Gaps = 46/220 (20%) Query: 116 LLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAE-FSRSRKRLLTA 174 LL ++QL ++L +A E+ D + IGR+H A P T G + + YA +R R+ A Sbjct: 155 LLPALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFS-GYAAQLARDIARIEAA 213 Query: 175 REEIAVCAISGS-VGTFSNIHP----YVEQHVADAMGLK----TDPISSQVIARDRHAMY 225 E + + G+ VGT N P V +A+ GL + + A D Sbjct: 214 LERLRELNLGGTAVGTGLNAPPGYAEKVAAELAELTGLPFVTAPNLFEATA-AHDALVEV 272 Query: 226 FSVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTG 282 L +A S+ ++A ++R L R + E+ Q GSS MP K NP Sbjct: 273 SGALKTLAVSLSKIANDLRLLSSGPRAGLGEIN--LPANQPGSSIMPGKVNP-------- 322 Query: 283 LSRLIRSHVIP-AMENVALWHERDISHSSVERVIGPDATI 321 VIP A+ VA +VIG D I Sbjct: 323 --------VIPEAVNMVAA------------QVIGNDTAI 342 >gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle. Length = 455 Score = 57.9 bits (141), Expect = 5e-09 Identities = 69/235 (29%), Positives = 103/235 (43%), Gaps = 45/235 (19%) Query: 116 LLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAR 175 LL + L+++L +A E+KD + IGR+H A P T G + + A+ + R+ A Sbjct: 156 LLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAAL 215 Query: 176 EEIAVCAISG-SVGTFSNIHP-YVEQ---HVADAMGL--KTDPISSQVIA-RDRHAMYFS 227 + A+ G +VGT N HP + E+ +A+ GL T P + +A D Sbjct: 216 PRLYELALGGTAVGTGLNAHPGFAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASG 275 Query: 228 VLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLS 284 L +A S+ ++A +IR L R + E+ + GSS MP K NP E LT Sbjct: 276 ALKTLAVSLMKIANDIRWLGSGPRCGLGELS--LPENEPGSSIMPGKVNPTQCEALT--- 330 Query: 285 RLIRSHVIPAMENVALWHERDISHSSVERVIGPDATIHL-----DFALNRLKNVI 334 M VA +V+G DA I + +F LN K VI Sbjct: 331 ----------M--VAA------------QVMGNDAAITIAGSSGNFELNVFKPVI 361 >gnl|CDD|36530 KOG1316, KOG1316, KOG1316, Argininosuccinate lyase [Amino acid transport and metabolism]. Length = 464 Score = 49.9 bits (119), Expect = 1e-06 Identities = 80/372 (21%), Positives = 141/372 (37%), Gaps = 51/372 (13%) Query: 80 LAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLT 139 L E+IG A +H G + +D + T + L + D +L + L+ L RA D L Sbjct: 96 LTELIGEIAGKLHTGRSRNDQVVTDLRLWLRDAIDTILGLLWNLIRVLVDRAEAELDVLM 155 Query: 140 IGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAV-----CAISGSVGTFSNIH 194 G +H A+P + L + +R RL+ R+ + A++G N Sbjct: 156 PGYTHLQRAQPVRWSHWLLSHAEQLTRDLGRLVQIRKRLNQLPLGAGALAG------NPL 209 Query: 195 PYVEQHVADAMGLKTDPISSQVIA---RDRHAMYFSVLGVIASSIERVATEIRHLQRTEI 251 + +A+ +G I + + A RD + ++ + + R+A ++ E Sbjct: 210 GIDREFLAEELGF-EGVIMNSMDAVSDRDFVVEFLFWASMVMTHLSRLAEDLIIYSTKEF 268 Query: 252 LEVEEFFHPG---QKGSSSMPHKRNP-----------ILTENLTGLSRLIRSHVIPAMEN 297 F GSS MP K+NP + +LTGL ++ +P+ N Sbjct: 269 ----GFVTLSDAYSTGSSLMPQKKNPDSLELLRGKSGRVFGDLTGLLMTLKG--LPSTYN 322 Query: 298 VALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHS 357 L +++ S + V +L VI L V ENM+ L Sbjct: 323 KDLQEDKEPLFDSSKTVSD---------SLQVATGVISTLTVNQENMEKALTP-----DM 368 Query: 358 QRILLA--LTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKF 415 LA L + GV + + + + + G + L D+ L E+++ F Sbjct: 369 LATDLAYYLVRKGVPFRQTHHISGKAVRMAEERGVTLDKLSLEDLQKLSPLFEEDVFCVF 428 Query: 416 DYKYHTKHVNAI 427 +Y+ + AI Sbjct: 429 NYENSVEKRCAI 440 >gnl|CDD|34812 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion]. Length = 858 Score = 31.2 bits (70), Expect = 0.65 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 15/132 (11%) Query: 112 STDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRL 171 D L+E ++LES K + D T I A T+ + ++F R Sbjct: 594 VEDQLMELFIRILES-TKPTTAFGDVYT-----AISALSTSLEERFEQYASKFIPYLTRA 647 Query: 172 LTAREEIAVCAISGSVGTFSN-----IHPYVEQHVADAMGLKTDPISSQVIARDRHAMYF 226 L + + + G VG +N + Y + M +SS+ RD Sbjct: 648 LNCTDRFVLNSAVGLVGDLANTLGTDFNIYAD----VLMSSLVQCLSSEATHRDLKPAIL 703 Query: 227 SVLGVIASSIER 238 SV G IA +I Sbjct: 704 SVFGDIALAIGA 715 >gnl|CDD|33502 COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms]. Length = 194 Score = 29.4 bits (66), Expect = 1.8 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%) Query: 323 LDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNA 382 LD A++R + L +KD LE+ K + ++ +L+ + G+S EEAY+L++R A Sbjct: 117 LDVAVSRFEE-RRALRRELAKLKDRLEERKVIERAKGLLMK--RRGLSEEEAYKLLRRTA 173 Query: 383 MK 384 M Sbjct: 174 MD 175 >gnl|CDD|32423 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]. Length = 187 Score = 29.0 bits (65), Expect = 2.5 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 42 EKSSKNIWEKGRNAV-FNVDRIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDI 100 E+ + + RNA F VD + +++ D L L PDA FI G +I Sbjct: 65 ERDEEALELIERNAARFGVDNL----EVVEGDAPEALPDLPS---PDAIFIGGGGNIEEI 117 Query: 101 LDTCFSIQLMRSTD------ILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHA 148 L+ + ++ I LE + + LE+L++ + I R + Sbjct: 118 LEAA--WERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQISRGKPLGG 169 >gnl|CDD|153333 cd07649, F-BAR_GAS7, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. Length = 233 Score = 28.4 bits (63), Expect = 3.8 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%) Query: 262 QKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDATI 321 QK + +R I E LS+L +S + A E L + + V++ + +A + Sbjct: 21 QKEMAEFIRERIKIEEEYAKNLSKLSQS-SLAAQEEGTLGE----AWAQVKKSLADEAEV 75 Query: 322 HLDFALNRLKNVIEE-LVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSR 371 HL F+ ++L++ +E+ L+ + EN K ++++L I R LA A V + Sbjct: 76 HLKFS-SKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEK 125 >gnl|CDD|107335 cd06340, PBP1_ABC_ligand_binding_like_6, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Length = 347 Score = 27.2 bits (61), Expect = 9.2 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 14/69 (20%) Query: 209 TDPISSQVIAR----------DRHAMYFSVLGVIASSIERVAT----EIRHLQRTEILEV 254 DP++ + R A ++ + VIA ++ER + +IR L Sbjct: 262 KDPMAKDLNKRFKARFGVDLSGNSARAYTAVLVIADALERAGSADPEKIRDLAALASTSG 321 Query: 255 EEFFHPGQK 263 E+ P Sbjct: 322 EDLIMPYGP 330 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.135 0.391 Gapped Lambda K H 0.267 0.0685 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,211,692 Number of extensions: 276441 Number of successful extensions: 764 Number of sequences better than 10.0: 1 Number of HSP's gapped: 725 Number of HSP's successfully gapped: 39 Length of query: 435 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 338 Effective length of database: 4,167,664 Effective search space: 1408670432 Effective search space used: 1408670432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.6 bits)