RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase
[Candidatus Liberibacter asiaticus str. psy62]
         (435 letters)



>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
           (ASL)_subgroup 1.  This subgroup contains bacterial and
           archeal proteins similar to ASL, a member of the Lyase
           class I family. Members of this family for the most part
           catalyze similar beta-elimination reactions in which a
           C-N or C-O bond is cleaved with the release of fumarate
           as one of the products. These proteins are active as
           tetramers. The four active sites of the homotetrameric
           enzyme are each formed by residues from three different
           subunits. ASL catalyzes two steps in the de novo purine
           biosynthesis: the conversion of
           5-aminoimidazole-(N-succinylocarboxamide) ribotide
           (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
           (AICAR) and, the conversion of adenylsuccinate (SAMP)
           into adenosine monophosphate (AMP).
          Length = 387

 Score =  624 bits (1613), Expect = e-179
 Identities = 242/427 (56%), Positives = 311/427 (72%), Gaps = 40/427 (9%)

Query: 4   RYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIM 63
           RY R  M  +WS E KFR W E+EA  C+A AKLGVIP ++++ I +K   A F+V+R+ 
Sbjct: 1   RYGRPEMKKIWSEENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKK---AKFDVERVK 57

Query: 64  ELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQL 123
           E+++  KHDVIAF+T +AE  G   R+IH G+TSSD++DT  ++QL  + DI+L+D+ +L
Sbjct: 58  EIEAETKHDVIAFVTAIAEYCGEAGRYIHFGLTSSDVVDTALALQLREALDIILKDLKEL 117

Query: 124 LESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAI 183
           LE LKK+A E+KDT+ +GR+HGIHAEPTTFGLK A+ YAEF R  +RL  ARE I V  I
Sbjct: 118 LEVLKKKALEHKDTVMVGRTHGIHAEPTTFGLKFALWYAEFKRHLERLKEARERILVGKI 177

Query: 184 SGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATEI 243
           SG+VGT++N+ P VE+ VA+ +GLK +PIS+QVI RDRHA Y S L +IAS++E++ATEI
Sbjct: 178 SGAVGTYANLGPEVEERVAEKLGLKPEPISTQVIQRDRHAEYLSTLALIASTLEKIATEI 237

Query: 244 RHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHE 303
           RHLQRTE+LEVEE F  GQKGSS+MPHKRNPIL+EN+ GL+R+IRS+VIPA+ENVALWHE
Sbjct: 238 RHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVIRSNVIPALENVALWHE 297

Query: 304 RDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLA 363
           RDISHSSVERVI PDATI LD+ L R+  V+E LVVYPENM+ NL   KGLI SQR+LLA
Sbjct: 298 RDISHSSVERVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLA 357

Query: 364 LTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423
           L + G+SREEAY++VQR                                     +Y+ KH
Sbjct: 358 LVEKGMSREEAYEIVQR-------------------------------------EYYLKH 380

Query: 424 VNAIFER 430
           V+ IF+R
Sbjct: 381 VDEIFKR 387


>gnl|CDD|30365 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
           metabolism].
          Length = 438

 Score =  516 bits (1331), Expect = e-147
 Identities = 208/437 (47%), Positives = 288/437 (65%), Gaps = 4/437 (0%)

Query: 1   MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVD 60
           +  RYS   M  ++S E K R W ++EA    A A+LGVIP +++  I      A F+++
Sbjct: 1   LDGRYSSPEMRAIFSEEAKLRAWLKVEAALARAQAELGVIPAEAAAEIDAAAAFAEFDLE 60

Query: 61  RIMELDSIIKHDVIAFLTHLAEIIGPDA-RFIHQGMTSSDILDTCFSIQLMRSTDILLED 119
           RI E+++   HDV A +  LAE +G +A  ++H G TS DI+DT  ++QL  + D++L D
Sbjct: 61  RIKEIEAETGHDVKALVRALAEKVGEEASEYVHFGATSQDIIDTALALQLKEALDLILPD 120

Query: 120 IDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIA 179
           + +L+E+L + A E+KDT  +GR+HG  AEPTTFG K A   AE  R  +RL  A E I 
Sbjct: 121 LKRLIEALAELALEHKDTPMLGRTHGQPAEPTTFGKKFANWLAELLRHLERLEEAEERII 180

Query: 180 VCAISGSVGTFSNIHP---YVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSI 236
           V  I G+VGT + +      VE+ VA+ +GLK  PIS+QV  RDR A +FS L ++A S+
Sbjct: 181 VGKIGGAVGTLAALGDLGAEVEERVAEKLGLKPAPISTQVSPRDRIAEFFSALALLAGSL 240

Query: 237 ERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAME 296
           E+ A +IR LQRTE+ EVEE F  GQ GSS+MPHKRNPI +EN+TGL+R+ R+ V   +E
Sbjct: 241 EKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLE 300

Query: 297 NVALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIH 356
           N+ LWHERD++ SSVERVI PDA I  D ALNRL NV+E L V PE M+ NL+   GLI 
Sbjct: 301 NLVLWHERDLTDSSVERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIA 360

Query: 357 SQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFD 416
           S+R++LAL + G+ REEA++LV+  AMK W+ G  FL++LLAD  + K LSE+E+ +  D
Sbjct: 361 SERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELLLADERVTKYLSEEELLELLD 420

Query: 417 YKYHTKHVNAIFERVFQ 433
              +    + I ERV +
Sbjct: 421 PANYLGRADEIVERVVK 437


>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
           (ASL)_like.  This group contains ASL, prokaryotic-type
           3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
           related proteins. These proteins are members of the
           Lyase class I family. Members of this family for the
           most part catalyze similar beta-elimination reactions in
           which a C-N or C-O bond is cleaved with the release of
           fumarate as one of the products. These proteins are
           active as tetramers. The four active sites of the
           homotetrameric enzyme are each formed by residues from
           three different subunits. ASL catalyzes two steps in the
           de novo purine biosynthesis: the conversion of
           5-aminoimidazole-(N-succinylocarboxamide) ribotide
           (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
           (AICAR) and; the conversion of adenylsuccinate (SAMP)
           into adenosine monophosphate (AMP). pCMLE catalyzes the
           cyclization of 3-carboxy-cis,cis-muconate (3CM) to
           4-carboxy-muconolactone, in the beta-ketoadipate
           pathway. ASL deficiency has been linked to several
           pathologies including psychomotor retardation with
           autistic features, epilepsy and muscle wasting.
          Length = 381

 Score =  496 bits (1279), Expect = e-141
 Identities = 183/375 (48%), Positives = 257/375 (68%), Gaps = 4/375 (1%)

Query: 10  MTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSII 69
           M  ++S E K R W ++EA   +A A+LG+IP+++++ I         + +RI E++   
Sbjct: 1   MRAIFSEENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAERIAEIEKET 60

Query: 70  KHDVIAFLTHLAEIIGPDA-RFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLK 128
            HDVIAF+  LAE  G DA  ++H G TS DI DT  ++QL  + DI+L D+D L+++L 
Sbjct: 61  GHDVIAFVYALAEKCGEDAGEYVHFGATSQDINDTALALQLRDALDIILPDLDALIDALA 120

Query: 129 KRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVG 188
           K A E+KDT  +GR+HG HA PTTFG K A+  AE  R  +RL  ARE + V  ISG+VG
Sbjct: 121 KLALEHKDTPMLGRTHGQHALPTTFGKKFAVWAAELLRHLERLEEARERVLVGGISGAVG 180

Query: 189 TFSNIHPY---VEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATEIRH 245
           T +++ P    VE+ VA+ +GLK  PI++Q+  RDR A   S L +IA ++E++AT+IR 
Sbjct: 181 THASLGPKGPEVEERVAEKLGLKVPPITTQIEPRDRIAELLSALALIAGTLEKIATDIRL 240

Query: 246 LQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERD 305
           LQRTEI EVEE F  GQ GSS+MPHKRNPI +EN+ GL+RL+R+   PA+EN+  WHERD
Sbjct: 241 LQRTEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENLVQWHERD 300

Query: 306 ISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALT 365
           +S SSVER I PDA + LD AL+RL+ ++E LVV PE M+ NL+   GLI S+ +++AL 
Sbjct: 301 LSDSSVERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALA 360

Query: 366 QAGVSREEAYQLVQR 380
           + G+ R+EAY+LV+ 
Sbjct: 361 KKGLGRQEAYELVKE 375


>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
           catalyze similar beta-elimination reactions.  The Lyase
           class I family contains class II fumarase, aspartase,
           adenylosuccinate lyase (ASL), argininosuccinate lyase
           (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
           cycloisomerase (pCMLE), and related proteins. It belongs
           to the Lyase_I superfamily. Proteins of this family for
           the most part catalyze similar beta-elimination
           reactions in which a C-N or C-O bond is cleaved with the
           release of fumarate as one of the products. These
           proteins are active as tetramers. The four active sites
           of the homotetrameric enzyme are each formed by residues
           from three different subunits.
          Length = 325

 Score =  309 bits (795), Expect = 7e-85
 Identities = 108/326 (33%), Positives = 170/326 (52%), Gaps = 6/326 (1%)

Query: 20  FRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNV-DRIMELDSIIKHDVIAFLT 78
            R   ++E     ALA+LG++P+++++ I       +  +    +E +    HDV+A   
Sbjct: 1   IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEE 60

Query: 79  HLAEIIGPD-ARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDT 137
            LAE  G     ++H G +S+DI+DT   + L  + DILL  +  L+++L  +A E+KDT
Sbjct: 61  VLAERAGELNGGYVHTGRSSNDIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDT 120

Query: 138 LTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAI-SGSVGTFSNIHPY 196
           +  GR+H   A+PTT G +LA   AE  R  +RL  A + + V  +  G+VGT +N  P 
Sbjct: 121 VMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLNVLPLGGGAVGTGANAPPI 180

Query: 197 VEQHVADAMGL-KTDPISSQVIA-RDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEV 254
             + VA+ +G     P S+Q ++ RD      S L ++A S+ ++A ++R L   E  EV
Sbjct: 181 DRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEV 240

Query: 255 EEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERV 314
           E      Q GSS MP K NP++ E + GL+  +  ++   +E +      D   S VER 
Sbjct: 241 ELPDAK-QPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDNVDSPVERE 299

Query: 315 IGPDATIHLDFALNRLKNVIEELVVY 340
             PD+   LD AL  L  V+E L V 
Sbjct: 300 ALPDSFDLLDAALRLLTGVLEGLEVN 325


>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
           cycloisomerase (CMLE)_like.  This subgroup contains
           pCLME and related proteins, and belongs to the Lyase
           class I family. Members of this family for the most part
           catalyze similar beta-elimination reactions in which a
           C-N or C-O bond is cleaved with the release of fumarate
           as one of the products. These proteins are active as
           tetramers. The four active sites of the homotetrameric
           enzyme are each formed by residues from three different
           subunits. CMLE catalyzes the cyclization of
           3-carboxy-cis,cis-muconate (3CM) to
           4-carboxy-muconolactone in the beta-ketoadipate pathway.
           This pathway is responsible for the catabolism of a
           variety of aromatic compounds into intermediates of the
           citric cycle in prokaryotic and eukaryotic
           micro-organisms.
          Length = 437

 Score =  302 bits (776), Expect = 1e-82
 Identities = 129/411 (31%), Positives = 216/411 (52%), Gaps = 6/411 (1%)

Query: 10  MTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSII 69
           M  ++S E + +   ++EA    A A+LGVIP++++  I         +++ + E  +  
Sbjct: 11  MREIFSDENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADVERLDLEALAEATART 70

Query: 70  KHDVIAFLTHLAEIIGPDA-RFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLK 128
            H  I  +  L    G  A  ++H G T+ DI+DT   +QL  + D+L  D+D LL++L 
Sbjct: 71  GHPAIPLVKQLTAACGDAAGEYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALA 130

Query: 129 KRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVG 188
           + A  ++DT  +GR+H  HA P TFGLK+A+  +E  R R+RL   R  + V    G+ G
Sbjct: 131 RLAATHRDTPMVGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGGAAG 190

Query: 189 TFS---NIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATEIRH 245
           T +   +    V++ +A  +GL    I     ARDR A   S L ++  ++ ++A ++  
Sbjct: 191 TLASLGDQGLAVQEALAAELGLGVPAIPWHT-ARDRIAELASFLALLTGTLGKIARDVYL 249

Query: 246 LQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERD 305
           L +TEI EV E F  G+ GSS+MPHKRNP+  E +  L+R +       ++ +   HERD
Sbjct: 250 LMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALARRVPGLAALLLDAMVQEHERD 309

Query: 306 ISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALT 365
                 E +  P+  +    AL + + ++  L V  + M+ NL+   GLI S+ +++AL 
Sbjct: 310 AGAWHAEWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALA 369

Query: 366 QAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFD 416
              + R+EA+ LV    M+  + G    +VLL D ++   LS++E+    D
Sbjct: 370 PK-LGRQEAHDLVYEACMRAVEEGRPLREVLLEDPEVAAYLSDEELDALLD 419


>gnl|CDD|37911 KOG2700, KOG2700, KOG2700, Adenylosuccinate lyase [Nucleotide
           transport and metabolism].
          Length = 481

 Score =  249 bits (637), Expect = 1e-66
 Identities = 116/445 (26%), Positives = 211/445 (47%), Gaps = 21/445 (4%)

Query: 6   SRTTMTTLWSLETKFRIW--FEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIM 63
           S + +  ++S   KF  W    +     +    L  I +++ + +         +   + 
Sbjct: 16  SISELNPIFSDRNKFSTWRRLWLWLAEAEKELGLTTITKEAIEEMKSSRDIENIDFTALS 75

Query: 64  ELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQL 123
             +   +HDV+A +    E+    A  IH G TS  + D    I+L  ++ ++L  +  +
Sbjct: 76  PEEGRYRHDVMAHVHSFGELCPIAAGIIHLGATSCFVTDNADLIELRDASKLILPYLAGV 135

Query: 124 LESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAI 183
           ++ L + A +YK+  T+GR+H   A+ TTFG ++ +   E  R  +R   AR ++    +
Sbjct: 136 IDRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRARTDVRFRGL 195

Query: 184 SGSVGTFSNIHPYVE----------QHVADAMGLKTDPI-SSQVIARDRHAMYFSVLGVI 232
            G+ GT ++                  V   +G     I + Q  +R   A   + L  +
Sbjct: 196 KGATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVTGQTYSRKTDAEEVAPLASL 255

Query: 233 ASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVI 292
            ++  + AT+IR L +    EVEE F   Q GSS+MP+KRNP+  E +T L+R +R +V 
Sbjct: 256 GATAHKYATDIRLLAK--FAEVEEPFEAHQIGSSAMPYKRNPMRCERITSLARHLRPYVT 313

Query: 293 PAMENVA-LWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQL 351
            A+   +  WHER +  S+  R++ PDA +  D  L  L N++E LVVYP+ ++ N+   
Sbjct: 314 QALNTASVQWHERTLDDSANRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIERNIRDE 373

Query: 352 KGLIHSQRILLALTQAGVSREEAYQLVQR----NAMKVWKNGAIFLDVLLADVDIRKVLS 407
              +  + I++AL +AG+SR+EA++ +++     A  V + G     +  A  D      
Sbjct: 374 LPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQAAQVVKQEGGDNDLIERAKEDPTFKPV 433

Query: 408 EKEICDKFD-YKYHTKHVNAIFERV 431
           ++E+    D   +  + V+ I + V
Sbjct: 434 KEELDSLLDPLNFTGRAVDQIEKFV 458


>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
           (ASL)_subgroup 2.  This subgroup contains mainly
           eukaryotic proteins similar to ASL, a member of the
           Lyase class I family. Members of this family for the
           most part catalyze similar beta-elimination reactions in
           which a C-N or C-O bond is cleaved with the release of
           fumarate as one of the products. These proteins are
           active as tetramers. The four active sites of the
           homotetrameric enzyme are each formed by residues from
           three different subunits. ASL catalyzes two steps in the
           de novo purine biosynthesis: the conversion of
           5-aminoimidazole-(N-succinylocarboxamide) ribotide
           (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
           (AICAR) and, the conversion of adenylsuccinate (SAMP)
           into adenosine monophosphate (AMP). ASL deficiency has
           been linked to several pathologies including psychomotor
           retardation with autistic features, epilepsy and muscle
           wasting.
          Length = 436

 Score =  191 bits (487), Expect = 3e-49
 Identities = 107/393 (27%), Positives = 190/393 (48%), Gaps = 17/393 (4%)

Query: 4   RYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRN-AVFNVDRI 62
           RY+   M  ++S   KF  W ++     +A  +LG+  + S + I E   N    + +  
Sbjct: 4   RYASKEMVYIFSPRKKFSTWRKLWLWLAEAEKELGL--DISDEQIEEMKANVENIDFEIA 61

Query: 63  MELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQ 122
              +  ++HDV+A +     +    A  IH G TS  + D    IQ+  + D++L  +  
Sbjct: 62  AAEEKKLRHDVMAHVHAFGLLCPAAAGIIHLGATSCFVTDNTDLIQIRDALDLILPKLAA 121

Query: 123 LLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCA 182
           +++ L + A EYKD  T+G +H   A+ TT G +  +   +     + L   R+++    
Sbjct: 122 VIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLRDDLRFRG 181

Query: 183 ISGSVGT-------FSNIHPYVEQ---HVADAMGLKTD-PISSQVIARDRHAMYFSVLGV 231
           + G+ GT       F   H  VE     V    G K   P++ Q  +R       + L  
Sbjct: 182 VKGTTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVDIDVLNALSS 241

Query: 232 IASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHV 291
           + ++  ++AT+IR L   +  EVEE F  GQ GSS+MP+KRNP+ +E    L+R + +  
Sbjct: 242 LGATAHKIATDIRLLANLK--EVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLA 299

Query: 292 I-PAMENVALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQ 350
              A      W ER +  S+  R+  P+A +  D  L  L+N+ E LVVYP+ ++ ++ Q
Sbjct: 300 SNAAQTASTQWFERTLDDSANRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQ 359

Query: 351 LKGLIHSQRILLALTQAGVSREEAYQLVQRNAM 383
               + ++ I++A  +AG  R++A++ ++  + 
Sbjct: 360 ELPFMATENIIMAAVKAGGDRQDAHERIRVLSH 392


>gnl|CDD|143963 pfam00206, Lyase_1, Lyase. 
          Length = 312

 Score =  179 bits (455), Expect = 2e-45
 Identities = 75/293 (25%), Positives = 121/293 (41%), Gaps = 23/293 (7%)

Query: 15  SLETKFRIWFEIE---AHACDALAKLGVIPEKSSKNIWEKGRNAV---FNVDRIMELDSI 68
                FR+  E     A    A AK  V+ ++ +  I  K  + V      D    L  I
Sbjct: 17  RSRFNFRLSEEDIKGLAALKKAAAKANVLLKEEAAAI-IKALDEVAEEGKADDAFVLKVI 75

Query: 69  IKHDVIAFLTHLAEIIGPD-------ARFIHQGMTSSDILDTCFSIQLMRS-TDILLEDI 120
            +    A   +L E+IG            +H G +S+D + T   + L  + +++LL  +
Sbjct: 76  QEGSGTAVNMNLNEVIGELLGQLVHPNDKVHTGQSSNDQVPTALRLALKLALSEVLLPAL 135

Query: 121 DQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAV 180
            QL+++LK++A E+ D +  GR+H   A P T G +L+      +R  +RL      I V
Sbjct: 136 GQLIDALKEKAKEFADVVKPGRTHLQDATPVTLGQELSGYAVALTRDLERLKQLLPRILV 195

Query: 181 CAISGS--VGTFSNIHPYVEQHVA------DAMGLKTDPISSQVIARDRHAMYFSVLGVI 232
             + G   VGT  N  P   + +A        + +           RD    +   L ++
Sbjct: 196 EPLGGGTAVGTGLNADPEFAELLAKELGFFTGLPVPAPNSFEATSDRDAVVEFSGALALL 255

Query: 233 ASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSR 285
           A+ + + A ++R L       VE     G+ GSS MP K NP   E L G + 
Sbjct: 256 ATHLSKFANDLRLLSSGPFGFVELSLAEGEPGSSIMPGKVNPDQLELLRGKAG 308


>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
           lyase class I family, histidine ammonia-lyase and
           phenylalanine ammonia-lyase, which catalyze similar
           beta-elimination reactions.  Lyase class I_like
           superfamily of enzymes that catalyze beta-elimination
           reactions and are active as homotetramers. The four
           active sites of the homotetrameric enzyme are each
           formed by residues from three different subunits. This
           superfamily contains the lyase class I family, histidine
           ammonia-lyase and phenylalanine ammonia-lyase. The lyase
           class I family comprises proteins similar to class II
           fumarase, aspartase, adenylosuccinate lyase,
           argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
           lactonizing enzyme which, for the most part catalyze
           similar beta-elimination reactions in which a C-N or C-O
           bond is cleaved with the release of fumarate as one of
           the products. Histidine or phenylalanine ammonia-lyase
           catalyze a beta-elimination of ammonia from histidine
           and phenylalanine, respectively.
          Length = 231

 Score =  177 bits (452), Expect = 4e-45
 Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 52/257 (20%)

Query: 80  LAEIIGPDARFIHQ------GMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFE 133
           LA   G  A  +H       G +S+DI  T   + L  + D LL  +  L+++L  +A  
Sbjct: 20  LAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEA 79

Query: 134 YKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNI 193
           +K T+  GR+H   A+P T G +L        R  +RL  A                   
Sbjct: 80  HKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERLEEAA------------------ 121

Query: 194 HPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILE 253
                                        A     L + A+ + ++A ++R L   E  E
Sbjct: 122 ----------------------------VAEALDALALAAAHLSKIAEDLRLLLSGEFGE 153

Query: 254 VEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVER 313
           + E F PGQ GSS MP K NP+  E + GL+ L+  +++  +  +    ERD   S   R
Sbjct: 154 LGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGGPERDNEDSPSMR 213

Query: 314 VIGPDATIHLDFALNRL 330
            I  D+ + L  AL  L
Sbjct: 214 EILADSLLLLIDALRLL 230


>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
           ASL).  This subgroup contains EcASL, the product of the
           purB gene in Escherichia coli, and related proteins. It
           is a member of the Lyase class I family of the Lyase_I
           superfamily. Members of the Lyase class I family
           function as homotetramers to catalyze similar
           beta-elimination reactions in which a Calpha-N or
           Calpha-O bond is cleaved with the subsequent release of
           fumarate as one of the products. The four active sites
           of the homotetrameric enzyme are each formed by residues
           from three different subunits. ASL catalyzes two
           non-sequential steps in the de novo purine biosynthesis
           pathway: the conversion of
           5-aminoimidazole-(N-succinylocarboxamide) ribotide
           (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
           (AICAR) and; the conversion of adenylsuccinate (SAMP)
           into adenosine monophosphate (AMP).
          Length = 425

 Score =  105 bits (263), Expect = 3e-23
 Identities = 101/372 (27%), Positives = 163/372 (43%), Gaps = 65/372 (17%)

Query: 19  KFRIWFEIEAHACDALAKLGVIPEKS--SKNIWEKGRNAVFN-----VDRIMELDSIIKH 71
           K+R+  ++E     AL+ L  IPE    +K   +  R  + N       RI E+++   H
Sbjct: 12  KYRV--QVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKEIEATTNH 69

Query: 72  DVIA---FLT---HLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRS---TDILLEDIDQ 122
           DV A   FL        ++     FIH   TS DI +   +  LM      +++L  + +
Sbjct: 70  DVKAVEYFLKEKFETLGLLKKIKEFIHFACTSEDINNL--AYALMIKEARNEVILPLLKE 127

Query: 123 LLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCA 182
           +++SLKK A EY D   + R+HG  A PTT G +LA+      R  K+L    ++I +  
Sbjct: 128 IIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVFVYRLERQYKQL----KQIEILG 183

Query: 183 -ISGSVGTFSNIH----PYVEQHVADA-----MGLKTDPISSQVIARDRHAMYFSVLGVI 232
             +G+VG F N H    P V+           +GL  +P ++Q+   D  A  F  L  I
Sbjct: 184 KFNGAVGNF-NAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTTQIEPHDYIAELFDALARI 242

Query: 233 ASSIERVATEI------RHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTG---- 282
            + +  +  +I       + ++            G+ GSS+MPHK NPI  EN  G    
Sbjct: 243 NTILIDLCRDIWGYISLGYFKQKVK--------KGEVGSSTMPHKVNPIDFENAEGNLGL 294

Query: 283 ----LSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELV 338
               L+ L     I  +       +RD++ S+V R IG  A  H   A   L   +++L 
Sbjct: 295 SNALLNHLSAKLPISRL-------QRDLTDSTVLRNIGV-AFGHSLIAYKSLLRGLDKLE 346

Query: 339 VYPENMKDNLEQ 350
           +    + ++L+ 
Sbjct: 347 LNEARLLEDLDA 358


>gnl|CDD|30514 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
           metabolism].
          Length = 459

 Score =  100 bits (250), Expect = 8e-22
 Identities = 101/413 (24%), Positives = 173/413 (41%), Gaps = 38/413 (9%)

Query: 28  AHACDALAKLGVIPEKSSKNI-------WEKGRNAVFNVDRIMELDSIIKHDV-IAFLTH 79
           AHA   LAK G+I E+ +  I        E+ R   F +D   E       DV  A    
Sbjct: 41  AHAK-MLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDPDDE-------DVHTAIEAR 92

Query: 80  LAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLT 139
           L E IG     +H G + +D + T   + L      LLE I  L ++L   A E+ +T+ 
Sbjct: 93  LIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLDLAEEHAETVM 152

Query: 140 IGRSHGIHAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVE 198
            G +H   A+P TF   L +AYAE  +R  +RL  A + + V  +       +   P   
Sbjct: 153 PGYTHLQRAQPVTFAHHL-LAYAEMLARDIERLRDALKRVNVSPLGAGALAGTPF-PIDR 210

Query: 199 QHVADAMGLKT---DPISSQVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVE 255
           +  A+ +G      + + + V  RD    + S   +I   + R+A ++      E   +E
Sbjct: 211 ERTAELLGFDAVTRNSLDA-VSDRDFILEFLSAAALIMVHLSRLAEDLILWSSPEFGFIE 269

Query: 256 ---EFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIP---AMENVALWHERDISHS 309
              EF      GSS MP K+NP + E + G +  +   +      M+ + L + RD+   
Sbjct: 270 LPDEF----STGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLAYNRDLQED 325

Query: 310 SVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGV 369
             E +   D+   L+ +L  L  ++  L V  E M++  E   G   +  +   L + GV
Sbjct: 326 K-EPLF--DSVDTLEDSLRVLAGMVSGLTVNKERMREAAEA--GFSTATDLADYLVRKGV 380

Query: 370 SREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTK 422
              EA+++V     +  + G    D+ L ++     L ++++ +    +    
Sbjct: 381 PFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVYEVLTPEESVA 433


>gnl|CDD|31230 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
           metabolism].
          Length = 471

 Score = 82.2 bits (203), Expect = 3e-16
 Identities = 84/378 (22%), Positives = 149/378 (39%), Gaps = 67/378 (17%)

Query: 7   RTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNI------WEKGR-NAVFNV 59
             +   +  +    R    ++  A  A  +LG +P++ +  I         G+ +  F V
Sbjct: 34  PISGLKISDVPEFIRAMAMVKKAAALANKELGALPKEIADAIVKACDEILDGKCHDQFVV 93

Query: 60  DRI---------MELDSIIKHDVIAFLTHLA---EIIGPDARFIHQGMTSS--DILDTCF 105
           D           M  + +I +  +  L H     + + P+    H  M+ S  D   T F
Sbjct: 94  DVYQGGAGTSTNMNANEVIANRALELLGHEKGEYQYLHPND---HVNMSQSTNDAYPTAF 150

Query: 106 SIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFS 165
            I + +S   L++ ++ L+E+ +++A E+ D L +GR+    A P T G +         
Sbjct: 151 RIAVYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALK 210

Query: 166 RSRKRLLTAREEIAVCAISGS-VGTFSNIHP-YVEQ---HVADAMGLKTDPISSQVIAR- 219
              KR+  A E +    + G+ +GT  N    Y+E     +A+  GL   P  + + A  
Sbjct: 211 EDIKRIYRAAELLLEVNLGGTAIGTGINAPKGYIELVVKKLAEVTGLPLVPAENLIEATQ 270

Query: 220 --DRHAMYFSVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNP 274
                 M    L  +A  + ++  ++R L    R  + E+       Q GSS MP K NP
Sbjct: 271 DTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEIN--LPAVQAGSSIMPGKVNP 328

Query: 275 ILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDATIHLDFALNRLK-NV 333
                           VIP + N        +       VIG D TI +     +L+ NV
Sbjct: 329 ----------------VIPEVVN-------QVCFK----VIGNDTTITMAAEAGQLQLNV 361

Query: 334 IEELVVYPENMKDNLEQL 351
           +E ++ Y   + +++  L
Sbjct: 362 MEPVIAY--ALFESISIL 377


>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
           (argininosuccinase, ASAL).  This group contains ASAL and
           related proteins. It is a member of the Lyase class I
           family. Members of this family for the most part
           catalyze similar beta-elimination reactions in which a
           C-N or C-O bond is cleaved with the release of fumarate
           as one of the products. These proteins are active as
           tetramers. The four active sites of the homotetrameric
           enzyme are each formed by residues from three different
           subunits. ASAL is a cytosolic enzyme which catalyzes the
           reversible breakdown of argininosuccinate to arginine
           and fumarate during arginine biosynthesis. In ureotelic
           species ASAL also catalyzes a reaction involved in the
           production of urea. Included in this group are the major
           soluble avian eye lens proteins from duck, delta 1 and
           delta 2 crystallin. Of these two isoforms only delta 2
           has retained ASAL activity. These crystallins may have
           evolved by, gene recruitment of ASAL followed by gene
           duplication. In humans, mutations in ASAL result in the
           autosomal recessive disorder argininosuccinic aciduria.
          Length = 435

 Score = 79.9 bits (198), Expect = 1e-15
 Identities = 101/381 (26%), Positives = 162/381 (42%), Gaps = 86/381 (22%)

Query: 15  SLETKFRIWFEI----EAHACDALAKLGVIPEKSSKNI----------WEKGRNAVFNVD 60
           S+    R++ E      AHA   LA+ G++ E+ +  I           E G    F +D
Sbjct: 1   SISFDRRLFEEDIAGSIAHA-VMLAEQGILTEEEAAKILAGLAKIRAEIEAGA---FELD 56

Query: 61  RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDI 120
              E + I     +A    L E IG     +H G + +D + T   + L  +   LLE +
Sbjct: 57  --PEDEDI----HMAIERRLIERIGDVGGKLHTGRSRNDQVATDLRLYLRDALLELLELL 110

Query: 121 DQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIA 179
             L  +L  RA E+ DT+  G +H   A+P TFG  L +AYAE   R  +RL  A + + 
Sbjct: 111 LDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYL-LAYAEMLERDLERLADAYKRVN 169

Query: 180 VC-----AISGSVGTFSNIHPYVEQHVADAMGLKT------DPISSQVIARDRHAMYFSV 228
           V      A++G+  TF  I     +  A+ +G         D +S     RD    + S 
Sbjct: 170 VSPLGAGALAGT--TF-PIDR---ERTAELLGFDGPTENSLDAVSD----RDFVLEFLSA 219

Query: 229 LGVIASSIERVATEIRHLQRTE---ILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSR 285
             ++   + R+A ++  L  T+    +E+ + +     GSS MP K+NP + E       
Sbjct: 220 AALLMVHLSRLAEDL-ILWSTQEFGFVELPDAY---STGSSIMPQKKNPDVLE------- 268

Query: 286 LIR---SHVIPA-------MENVALWHERDISHS------SVERVIGPDATIHLDFALNR 329
           LIR     VI A       ++ + L + +D+         +V+ +I   A++ L      
Sbjct: 269 LIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQEDKEPLFDAVDTLI---ASLRL------ 319

Query: 330 LKNVIEELVVYPENMKDNLEQ 350
           L  VI  L V PE M++  E 
Sbjct: 320 LTGVISTLTVNPERMREAAEA 340


>gnl|CDD|30463 COG0114, FumC, Fumarase [Energy production and conversion].
          Length = 462

 Score = 71.4 bits (175), Expect = 5e-13
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 14/203 (6%)

Query: 91  IHQGMTSSDILDTCFSIQ-LMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAE 149
           ++   +S+D   T   I  ++   + L+  +  L+++L  +A E+ D + IGR+H   A 
Sbjct: 133 VNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDAT 192

Query: 150 PTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGS-VGTFSNIHPYVEQHVADAMGLK 208
           P T G + +   A+   + +R+  +   +   AI G+ VGT  N HP   + VA+ +   
Sbjct: 193 PLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAHPEFGEKVAEELAEL 252

Query: 209 TD-PISS------QVIARDRHAMYFSVLGVIASSIERVATEIRHLQ---RTEILEVEEFF 258
           T  P  +       + A D        L  +A S+ ++A +IR L    R  + E+E   
Sbjct: 253 TGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIE--L 310

Query: 259 HPGQKGSSSMPHKRNPILTENLT 281
              + GSS MP K NP   E LT
Sbjct: 311 PENEPGSSIMPGKVNPTQCEALT 333


>gnl|CDD|36531 KOG1317, KOG1317, KOG1317, Fumarase [Energy production and
           conversion].
          Length = 487

 Score = 67.4 bits (164), Expect = 8e-12
 Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 17/246 (6%)

Query: 48  IWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHL--AEIIGPDARFIHQGMTSSDILDTCF 105
           +W+ G     N    M  + +I +  I  L     ++ + P+   +++  +S+D   T  
Sbjct: 118 VWQTGSGTQSN----MNANEVISNRAIEILGGKLGSKKVHPNDH-VNKSQSSNDTFPTAM 172

Query: 106 SIQL-MRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEF 164
            I         L+  +  L ++L+ ++ E+KD + IGR+H   A P T G + +    + 
Sbjct: 173 HIAAATEINSRLIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQV 232

Query: 165 SRSRKRLLTAREEIAVCAISGS-VGTFSNIHP----YVEQHVADAMGLK--TDPISSQVI 217
           +   +R+      +   A  G+ VGT  N        +   VA+  GL   T P   + +
Sbjct: 233 TNGLQRVAATLPRLYQLAQGGTAVGTGLNTRKGFAEKIAARVAELTGLPFVTAPNKFEAL 292

Query: 218 A-RDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHP-GQKGSSSMPHKRNPI 275
           A  D        L  IA S+ ++A +IR L       + E   P  + GSS MP K NP 
Sbjct: 293 AAHDAMVEVSGALNTIAVSLMKIANDIRFLGSGPRCGLGELMLPENEPGSSIMPGKVNPT 352

Query: 276 LTENLT 281
             E +T
Sbjct: 353 QCEAMT 358


>gnl|CDD|176462 cd01357, Aspartase, Aspartase.  This subgroup contains Escherichia
           coli aspartase (L-aspartate ammonia-lyase), Bacillus
           aspartase and related proteins. It is a member of the
           Lyase class I family, which includes both aspartase
           (L-aspartate ammonia-lyase) and fumarase class II
           enzymes. Members of this family for the most part
           catalyze similar beta-elimination reactions in which a
           C-N or C-O bond is cleaved with the release of fumarate
           as one of the products. These proteins are active as
           tetramers. The four active sites of the homotetrameric
           enzyme are each formed by residues from three different
           subunits. Aspartase catalyzes the reversible deamination
           of aspartic acid.
          Length = 450

 Score = 67.2 bits (165), Expect = 1e-11
 Identities = 69/257 (26%), Positives = 107/257 (41%), Gaps = 47/257 (18%)

Query: 99  DILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLA 158
           D+  T   + L+     LL+ +  L E+ + +A E+ D L +GR+    A P T G +  
Sbjct: 138 DVYPTALRLALILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQEFG 197

Query: 159 MAYAE-FSRSRKRLLTAREEIAVCAISGS-VGTFSNIHP----YVEQHVADAMGLK---- 208
            AYA    R R R+  ARE +    + G+ +GT  N  P     V + +++  GL     
Sbjct: 198 -AYATALKRDRARIYKARERLREVNLGGTAIGTGINAPPGYIELVVEKLSEITGLPLKRA 256

Query: 209 TDPISSQVIARDRHAMYFSVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGS 265
            + I +     D        L  +A  + ++A ++R L    R  + E+       Q GS
Sbjct: 257 ENLIDATQNT-DAFVEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEIN--LPAVQPGS 313

Query: 266 SSMPHKRNPILTENLTGLSRLIRSHVIPAMEN-VALWHERDISHSSVERVIGPDATIHLD 324
           S MP K NP                VIP + N VA             +VIG D TI + 
Sbjct: 314 SIMPGKVNP----------------VIPEVVNQVAF------------QVIGNDLTITMA 345

Query: 325 FALNRLK-NVIEELVVY 340
               +L+ NV E ++ Y
Sbjct: 346 AEAGQLELNVFEPVIAY 362


>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
           fumarase class II enzymes.  This group contains
           aspartase (L-aspartate ammonia-lyase), fumarase class II
           enzymes, and related proteins. It is a member of the
           Lyase class I family. Members of this family for the
           most part catalyze similar beta-elimination reactions in
           which a C-N or C-O bond is cleaved with the release of
           fumarate as one of the products. These proteins are
           active as tetramers. The four active sites of the
           homotetrameric enzyme are each formed by residues from
           three different subunits. Aspartase catalyzes the
           reversible deamination of aspartic acid. Fumarase
           catalyzes the reversible hydration/dehydration of
           fumarate to L-malate during the Krebs cycle.
          Length = 450

 Score = 65.9 bits (162), Expect = 2e-11
 Identities = 62/220 (28%), Positives = 91/220 (41%), Gaps = 46/220 (20%)

Query: 116 LLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAE-FSRSRKRLLTA 174
           LL  ++QL ++L  +A E+ D + IGR+H   A P T G + +  YA   +R   R+  A
Sbjct: 155 LLPALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFS-GYAAQLARDIARIEAA 213

Query: 175 REEIAVCAISGS-VGTFSNIHP----YVEQHVADAMGLK----TDPISSQVIARDRHAMY 225
            E +    + G+ VGT  N  P     V   +A+  GL      +   +   A D     
Sbjct: 214 LERLRELNLGGTAVGTGLNAPPGYAEKVAAELAELTGLPFVTAPNLFEATA-AHDALVEV 272

Query: 226 FSVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTG 282
              L  +A S+ ++A ++R L    R  + E+       Q GSS MP K NP        
Sbjct: 273 SGALKTLAVSLSKIANDLRLLSSGPRAGLGEIN--LPANQPGSSIMPGKVNP-------- 322

Query: 283 LSRLIRSHVIP-AMENVALWHERDISHSSVERVIGPDATI 321
                   VIP A+  VA             +VIG D  I
Sbjct: 323 --------VIPEAVNMVAA------------QVIGNDTAI 342


>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases.  This subgroup
           contains Escherichia coli fumarase C, human
           mitochondrial fumarase, and related proteins.  It is a
           member of the Lyase class I family. Members of this
           family for the most part catalyze similar
           beta-elimination reactions in which a C-N or C-O bond is
           cleaved with the release of fumarate as one of the
           products. These proteins are active as tetramers. The
           four active sites of the homotetrameric enzyme are each
           formed by residues from three different subunits.
           Fumarase catalyzes the reversible hydration/dehydration
           of fumarate to L-malate during the Krebs cycle.
          Length = 455

 Score = 57.9 bits (141), Expect = 5e-09
 Identities = 69/235 (29%), Positives = 103/235 (43%), Gaps = 45/235 (19%)

Query: 116 LLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAR 175
           LL  +  L+++L  +A E+KD + IGR+H   A P T G + +   A+   +  R+  A 
Sbjct: 156 LLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAAL 215

Query: 176 EEIAVCAISG-SVGTFSNIHP-YVEQ---HVADAMGL--KTDPISSQVIA-RDRHAMYFS 227
             +   A+ G +VGT  N HP + E+    +A+  GL   T P   + +A  D       
Sbjct: 216 PRLYELALGGTAVGTGLNAHPGFAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASG 275

Query: 228 VLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLS 284
            L  +A S+ ++A +IR L    R  + E+       + GSS MP K NP   E LT   
Sbjct: 276 ALKTLAVSLMKIANDIRWLGSGPRCGLGELS--LPENEPGSSIMPGKVNPTQCEALT--- 330

Query: 285 RLIRSHVIPAMENVALWHERDISHSSVERVIGPDATIHL-----DFALNRLKNVI 334
                     M  VA             +V+G DA I +     +F LN  K VI
Sbjct: 331 ----------M--VAA------------QVMGNDAAITIAGSSGNFELNVFKPVI 361


>gnl|CDD|36530 KOG1316, KOG1316, KOG1316, Argininosuccinate lyase [Amino acid
           transport and metabolism].
          Length = 464

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 80/372 (21%), Positives = 141/372 (37%), Gaps = 51/372 (13%)

Query: 80  LAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLT 139
           L E+IG  A  +H G + +D + T   + L  + D +L  +  L+  L  RA    D L 
Sbjct: 96  LTELIGEIAGKLHTGRSRNDQVVTDLRLWLRDAIDTILGLLWNLIRVLVDRAEAELDVLM 155

Query: 140 IGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAV-----CAISGSVGTFSNIH 194
            G +H   A+P  +   L     + +R   RL+  R+ +        A++G      N  
Sbjct: 156 PGYTHLQRAQPVRWSHWLLSHAEQLTRDLGRLVQIRKRLNQLPLGAGALAG------NPL 209

Query: 195 PYVEQHVADAMGLKTDPISSQVIA---RDRHAMYFSVLGVIASSIERVATEIRHLQRTEI 251
               + +A+ +G     I + + A   RD    +     ++ + + R+A ++      E 
Sbjct: 210 GIDREFLAEELGF-EGVIMNSMDAVSDRDFVVEFLFWASMVMTHLSRLAEDLIIYSTKEF 268

Query: 252 LEVEEFFHPG---QKGSSSMPHKRNP-----------ILTENLTGLSRLIRSHVIPAMEN 297
                F         GSS MP K+NP            +  +LTGL   ++   +P+  N
Sbjct: 269 ----GFVTLSDAYSTGSSLMPQKKNPDSLELLRGKSGRVFGDLTGLLMTLKG--LPSTYN 322

Query: 298 VALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHS 357
             L  +++    S + V           +L     VI  L V  ENM+  L         
Sbjct: 323 KDLQEDKEPLFDSSKTVSD---------SLQVATGVISTLTVNQENMEKALTP-----DM 368

Query: 358 QRILLA--LTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKF 415
               LA  L + GV   + + +  +      + G     + L D+     L E+++   F
Sbjct: 369 LATDLAYYLVRKGVPFRQTHHISGKAVRMAEERGVTLDKLSLEDLQKLSPLFEEDVFCVF 428

Query: 416 DYKYHTKHVNAI 427
           +Y+   +   AI
Sbjct: 429 NYENSVEKRCAI 440


>gnl|CDD|34812 COG5215, KAP95, Karyopherin (importin) beta [Intracellular
           trafficking and secretion].
          Length = 858

 Score = 31.2 bits (70), Expect = 0.65
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 15/132 (11%)

Query: 112 STDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRL 171
             D L+E   ++LES  K    + D  T      I A  T+   +     ++F     R 
Sbjct: 594 VEDQLMELFIRILES-TKPTTAFGDVYT-----AISALSTSLEERFEQYASKFIPYLTRA 647

Query: 172 LTAREEIAVCAISGSVGTFSN-----IHPYVEQHVADAMGLKTDPISSQVIARDRHAMYF 226
           L   +   + +  G VG  +N      + Y +      M      +SS+   RD      
Sbjct: 648 LNCTDRFVLNSAVGLVGDLANTLGTDFNIYAD----VLMSSLVQCLSSEATHRDLKPAIL 703

Query: 227 SVLGVIASSIER 238
           SV G IA +I  
Sbjct: 704 SVFGDIALAIGA 715


>gnl|CDD|33502 COG3707, AmiR, Response regulator with putative antiterminator
           output domain [Signal transduction mechanisms].
          Length = 194

 Score = 29.4 bits (66), Expect = 1.8
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 323 LDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNA 382
           LD A++R +     L      +KD LE+ K +  ++ +L+   + G+S EEAY+L++R A
Sbjct: 117 LDVAVSRFEE-RRALRRELAKLKDRLEERKVIERAKGLLMK--RRGLSEEEAYKLLRRTA 173

Query: 383 MK 384
           M 
Sbjct: 174 MD 175


>gnl|CDD|32423 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
          Length = 187

 Score = 29.0 bits (65), Expect = 2.5
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 42  EKSSKNIWEKGRNAV-FNVDRIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDI 100
           E+  + +    RNA  F VD +     +++ D    L  L     PDA FI  G    +I
Sbjct: 65  ERDEEALELIERNAARFGVDNL----EVVEGDAPEALPDLPS---PDAIFIGGGGNIEEI 117

Query: 101 LDTCFSIQLMRSTD------ILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHA 148
           L+     + ++         I LE + + LE+L++        + I R   +  
Sbjct: 118 LEAA--WERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQISRGKPLGG 169


>gnl|CDD|153333 cd07649, F-BAR_GAS7, The F-BAR (FES-CIP4 Homology and
           Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific
           protein 7.  F-BAR domains are dimerization modules that
           bind and bend membranes and are found in proteins
           involved in membrane dynamics and actin reorganization.
           Growth Arrest Specific protein 7 (GAS7) is mainly
           expressed in the brain and is required for neurite
           outgrowth. It may also play a role in the protection and
           migration of embryonic stem cells. Treatment-related
           acute myeloid leukemia (AML) has been reported resulting
           from mixed-lineage leukemia (MLL)-GAS7 translocations as
           a complication of primary cancer treatment. GAS7
           contains an N-terminal SH3 domain, followed by a WW
           domain, and a central F-BAR domain. F-BAR domains form
           banana-shaped dimers with a positively-charged concave
           surface that binds to negatively-charged lipid
           membranes. They can induce membrane deformation in the
           form of long tubules.
          Length = 233

 Score = 28.4 bits (63), Expect = 3.8
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)

Query: 262 QKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDATI 321
           QK  +    +R  I  E    LS+L +S  + A E   L      + + V++ +  +A +
Sbjct: 21  QKEMAEFIRERIKIEEEYAKNLSKLSQS-SLAAQEEGTLGE----AWAQVKKSLADEAEV 75

Query: 322 HLDFALNRLKNVIEE-LVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSR 371
           HL F+ ++L++ +E+ L+ + EN K ++++L   I   R  LA   A V +
Sbjct: 76  HLKFS-SKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEK 125


>gnl|CDD|107335 cd06340, PBP1_ABC_ligand_binding_like_6, Type I periplasmic
           ligand-binding domain of uncharacterized ABC (ATPase
           Binding Cassette)-type active transport systems that are
           predicted to be involved in transport of amino acids,
           peptides, or inorganic ions.  This subgroup includes the
           type I periplasmic ligand-binding domain of
           uncharacterized ABC (ATPase Binding Cassette)-type
           active transport systems that are predicted to be
           involved in transport of amino acids, peptides, or
           inorganic ions. This subgroup has high sequence
           similarity to members of the family of hydrophobic amino
           acid transporters (HAAT), such as
           leucine-isoleucine-valine-binding protein (LIVBP);
           however their ligand specificity has not been determined
           experimentally.
          Length = 347

 Score = 27.2 bits (61), Expect = 9.2
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 14/69 (20%)

Query: 209 TDPISSQVIAR----------DRHAMYFSVLGVIASSIERVAT----EIRHLQRTEILEV 254
            DP++  +  R             A  ++ + VIA ++ER  +    +IR L        
Sbjct: 262 KDPMAKDLNKRFKARFGVDLSGNSARAYTAVLVIADALERAGSADPEKIRDLAALASTSG 321

Query: 255 EEFFHPGQK 263
           E+   P   
Sbjct: 322 EDLIMPYGP 330


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,211,692
Number of extensions: 276441
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 725
Number of HSP's successfully gapped: 39
Length of query: 435
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 338
Effective length of database: 4,167,664
Effective search space: 1408670432
Effective search space used: 1408670432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)